From feea4660e2dfdd2702594e1eee0bae3c53c6d3cb Mon Sep 17 00:00:00 2001
From: "Michael R. Crusoe" <michael.crusoe@gmail.com>
Date: Tue, 6 Aug 2019 19:53:50 +0200
Subject: [PATCH] drop python2

---
 debian/control                        | 17 -----------------
 debian/python-pysam.links             |  4 ----
 debian/python-pysam.lintian-overrides |  4 ----
 debian/rules                          |  2 +-
 4 files changed, 1 insertion(+), 26 deletions(-)
 delete mode 100755 debian/python-pysam.links
 delete mode 100644 debian/python-pysam.lintian-overrides

diff --git a/debian/control b/debian/control
index ca1f9b8..8627369 100644
--- a/debian/control
+++ b/debian/control
@@ -10,35 +10,18 @@ Build-Depends: debhelper (>= 11~),
                dh-python,
                libhts-dev (>= 1.9),
                zlib1g-dev,
-               python-all-dev,
-               python-setuptools,
-               cython (>= 0.23),
                python3-all-dev,
                python3-setuptools,
                cython3 (>= 0.23),
                tabix <!nocheck>,
                samtools (>= 1.9) <!nocheck>,
                bcftools (>= 1.9) <!nocheck>,
-               python-pytest <!nocheck>,
                python3-pytest <!nocheck>
 Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam
 Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git
 Homepage: http://pysam.readthedocs.org/en/latest
 
-Package: python-pysam
-Architecture: any
-Depends: ${shlibs:Depends},
-         ${misc:Depends},
-         ${python:Depends}
-Provides: ${python:Provides}
-Description: interface for the SAM/BAM sequence alignment and mapping format (Python 2)
- Pysam is a Python module for reading and manipulating Samfiles. It's a
- lightweight wrapper of the samtools C-API. Pysam also includes an interface
- for tabix.
- .
- This package installs the module for Python 2.
-
 Package: python3-pysam
 Architecture: any
 Depends: ${shlibs:Depends},
diff --git a/debian/python-pysam.links b/debian/python-pysam.links
deleted file mode 100755
index 8cc3b2c..0000000
--- a/debian/python-pysam.links
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/usr/bin/dh-exec
-/usr/lib/python2.7/dist-packages/pysam/libcsamtools.${DEB_HOST_GNU_TYPE}.so /usr/lib/python2.7/dist-packages/pysam/libcsamtools.so
-/usr/lib/python2.7/dist-packages/pysam/libcbcftools.${DEB_HOST_GNU_TYPE}.so /usr/lib/python2.7/dist-packages/pysam/libcbcftools.so
-/usr/lib/python2.7/dist-packages/pysam/libchtslib.${DEB_HOST_GNU_TYPE}.so /usr/lib/python2.7/dist-packages/pysam/libchtslib.so
diff --git a/debian/python-pysam.lintian-overrides b/debian/python-pysam.lintian-overrides
deleted file mode 100644
index 785680d..0000000
--- a/debian/python-pysam.lintian-overrides
+++ /dev/null
@@ -1,4 +0,0 @@
-# These are apparently false-positives
-# Inspection of the build logs shows that these are indeed compiled with
-# -D_FORTIFY_SOURCE=2
-hardening-no-fortify-functions usr/lib/python2.7/dist-packages/pysam/lib*.so
diff --git a/debian/rules b/debian/rules
index 091888f..38b8c72 100755
--- a/debian/rules
+++ b/debian/rules
@@ -21,7 +21,7 @@ export HTSLIB_INCLUDE_DIR=/usr/include
 
 clean: clean-tests
 %:
-	dh $@ --with python2,python3 --buildsystem=pybuild
+	dh $@ --with python3 --buildsystem=pybuild
 
 override_dh_install: clean-tests
 	dh_install -Xtest.gtf.gz
-- 
2.30.2