From ef1e799ffc49a134a3bd9546b9d2d69c36553cac Mon Sep 17 00:00:00 2001 From: Olivier Sallou Date: Tue, 10 May 2011 08:03:11 +0000 Subject: [PATCH] move to use/share legacy files --- debian/control | 2 +- debian/legacy/legacy.sh | 4 ++++ debian/ncbi-blast+-legacy.dirs | 2 +- debian/ncbi-blast+-legacy.links | 16 ++++++++-------- debian/rules | 2 +- 5 files changed, 15 insertions(+), 11 deletions(-) create mode 100755 debian/legacy/legacy.sh diff --git a/debian/control b/debian/control index 5c7cb631..1de1041e 100644 --- a/debian/control +++ b/debian/control @@ -35,5 +35,5 @@ Description: NCBI Blast legacy call script This package adds some fake scripts to call NCBI+ programs with the NCBI blast command line. It makes use of the legacy_blast.pl script in ncbi-blast+ package. - To use those scripts, /var/lib/ncbi-blast+/bin must be added + To use those scripts, /usr/share/ncbi-blast+/bin must be added to the PATH. diff --git a/debian/legacy/legacy.sh b/debian/legacy/legacy.sh new file mode 100755 index 00000000..985fd0fb --- /dev/null +++ b/debian/legacy/legacy.sh @@ -0,0 +1,4 @@ +#!/bin/sh + +# Execute legacy blast +legacy_blast.pl ${0##*/} $@ diff --git a/debian/ncbi-blast+-legacy.dirs b/debian/ncbi-blast+-legacy.dirs index c70c9418..da6a4081 100644 --- a/debian/ncbi-blast+-legacy.dirs +++ b/debian/ncbi-blast+-legacy.dirs @@ -1 +1 @@ -/var/lib/ncbi-blast+/bin +/usr/share/ncbi-blast+/bin diff --git a/debian/ncbi-blast+-legacy.links b/debian/ncbi-blast+-legacy.links index 1c024bdd..c7320566 100644 --- a/debian/ncbi-blast+-legacy.links +++ b/debian/ncbi-blast+-legacy.links @@ -1,8 +1,8 @@ -var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/blastall -var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/megablast -var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/blastpgp -var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/bl2seq -var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/rpsblast -var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/fastacmd -var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/formatdb -var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/seedtop +usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/blastall +usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/megablast +usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/blastpgp +usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/bl2seq +usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/rpsblast +usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/fastacmd +usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/formatdb +usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/seedtop diff --git a/debian/rules b/debian/rules index 07579d9b..8ed0b652 100755 --- a/debian/rules +++ b/debian/rules @@ -21,7 +21,7 @@ override_dh_auto_configure: override_dh_install: #TODO - can I just use -X.a -Xinclude instead of removing unneeded files later? dh_install - cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/var/lib/ncbi-blast+/bin + cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin rm -f ${CURDIR}/debian/ncbi-blast+/usr/bin/*test* #mkdir -p ${CURDIR}/debian/ncbi-blast+-dev/usr/lib/ncbi-blast+ rm -f ${CURDIR}/debian/ncbi-blast+/usr/lib/ncbi-blast+/*.a -- 2.30.2