From e4bfa6dd891af8e5b54d06cf82542fdf07cd1ae3 Mon Sep 17 00:00:00 2001 From: Olivier Sallou Date: Sun, 11 Feb 2018 17:51:41 +0000 Subject: [PATCH] new upstream release 2.7.1 --- debian/changelog | 7 +------ debian/patches/fix_unit_tests | 14 ++++++++++++++ debian/patches/series | 1 + debian/rules | 4 ++-- 4 files changed, 18 insertions(+), 8 deletions(-) create mode 100644 debian/patches/fix_unit_tests diff --git a/debian/changelog b/debian/changelog index c9e3a368..471e56ed 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,15 +1,10 @@ -ncbi-blast+ (2.7.1-1) UNRELEASED; urgency=medium +ncbi-blast+ (2.7.1-1) unstable; urgency=medium * New upstream release d/patches: update patch for new release d/control: go to standards 4.1.3 add mbedtls dependency - - - [TODO] - new embedded library mbedtls in c++/src/connect/ - some unit tests are failing due to symbols not found -- Olivier Sallou Sat, 10 Feb 2018 17:35:31 +0000 diff --git a/debian/patches/fix_unit_tests b/debian/patches/fix_unit_tests new file mode 100644 index 00000000..710165ed --- /dev/null +++ b/debian/patches/fix_unit_tests @@ -0,0 +1,14 @@ +Subject: add missing lib for tests +Description: unit_test need blast lib to compile +Forwarded: Not-Needed +Author: Olivier Sallou +Last-Updated: 2018-02-11 +--- a/c++/src/algo/blast/Makefile.blast_macros.mk ++++ b/c++/src/algo/blast/Makefile.blast_macros.mk +@@ -21,5 +21,5 @@ + BLAST_LDEP = xalgoblastdbindex composition_adjustment \ + xalgodustmask xalgowinmask seqmasks_io seqdb blast_services xalnmgr \ + xobjutil $(OBJREAD_LIBS) xnetblastcli xnetblast blastdb scoremat tables +-BLAST_LIBS = proteinkmer xblast $(BLAST_LDEP) ++BLAST_LIBS = proteinkmer xblast blast $(BLAST_LDEP) + # BLAST additionally needs xconnect $(SOBJMGR_LIBS) or $(OBJMGR_LIBS) diff --git a/debian/patches/series b/debian/patches/series index d7a59a69..5d845962 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -11,3 +11,4 @@ fix_configure support_x32 suppress_gnutls_version_check optionally_keep_sequence +fix_unit_tests diff --git a/debian/rules b/debian/rules index 65e6748e..22a17582 100755 --- a/debian/rules +++ b/debian/rules @@ -125,5 +125,5 @@ override_dh_gencontrol-indep: dh_gencontrol -Nblast2 %: - dh $@ -Dc++ --with autotools_dev - #dh $@ -Dc++ + #dh $@ -Dc++ --with autotools_dev + dh $@ -Dc++ -- 2.30.2