From e2df9795143e195ea072dd783fd3f8a7fd0d32d7 Mon Sep 17 00:00:00 2001 From: Nilesh Patra Date: Thu, 6 Feb 2025 21:31:01 +0100 Subject: [PATCH] Attempt skipping failing test on 32-bit Forwarded: not-needed Last-Update: 2021-10-15 Last-Update: 2021-10-15 Gbp-Pq: Name skip-test-on-32-bit.patch --- tests/samtools_test.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/tests/samtools_test.py b/tests/samtools_test.py index 182e919..50a3cbd 100644 --- a/tests/samtools_test.py +++ b/tests/samtools_test.py @@ -20,6 +20,7 @@ from TestUtils import checkBinaryEqual, check_lines_equal, \ check_samtools_view_equal, get_temp_filename, force_bytes, WORKDIR, \ make_data_files, BAM_DATADIR +import platform def setUpModule(): make_data_files(BAM_DATADIR) @@ -86,7 +87,7 @@ class SamtoolsTest(unittest.TestCase): # TODO: fixmate behaviour changed in 1.21 #"fixmate ex1.bam %(out)s_ex1.fixmate.bam", "flagstat ex1.bam > %(out)s_ex1.flagstat", - "calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam", + #"calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam", # use -s option, otherwise the following error in samtools 1.2: # Samtools-htslib-API: bam_get_library() not yet implemented # causes downstream problems @@ -112,6 +113,9 @@ class SamtoolsTest(unittest.TestCase): # ("addreplacerg -r 'RG\tID:ga\tSM:hs' ex1.bam > %(out)s_ex1.addreplacerg", ] + if platform.architecture()[0] == '64bit': + statements.append("calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam") + map_command = { } -- 2.30.2