From e2458244d9a25db4de0c94f1ed82892db848fd4e Mon Sep 17 00:00:00 2001 From: Olivier Sallou Date: Fri, 29 Apr 2011 15:51:36 +0000 Subject: [PATCH] remove dev, update rpath issues --- debian/changelog | 4 ++-- debian/control | 17 +++++++---------- debian/ncbi-blast-plus-dev.docs | 1 - debian/rules | 10 ++++++---- 4 files changed, 15 insertions(+), 17 deletions(-) delete mode 100644 debian/ncbi-blast-plus-dev.docs diff --git a/debian/changelog b/debian/changelog index ba6fc109..7cc2fbd3 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,5 +1,5 @@ ncbi-blast-plus (2.2.25-1) unstable; urgency=low - * Initial release (Closes: #nnnn) + * Initial release (Closes: #624394) - -- Olivier Sallou Wed, 27 Apr 2011 15:19:59 +0200 + -- Olivier Sallou Wed, 27 Apr 2011 15:19:59 +0200 diff --git a/debian/control b/debian/control index 1498aa6c..3848a883 100644 --- a/debian/control +++ b/debian/control @@ -1,7 +1,7 @@ Source: ncbi-blast-plus Section: science Priority: optional -Build-Depends: debhelper (>= 7.0.50~),libboost-all-dev,zlib1g-dev,bzip2,python,libpcre++-dev,zlib1g-dev +Build-Depends: debhelper (>= 7.0.50~),autotools-dev,libboost-all-dev,zlib1g-dev,bzip2,python,libpcre++-dev,zlib1g-dev,chrpath Standards-Version: 3.9.1 Uploaders: Olivier Sallou DM-Upload-Allowed: yes @@ -20,14 +20,11 @@ Description: NCBI Blast+ is new blast evolution used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide - queries or databases in all six frames and compare to protein databases or queries. + queries or databases in all six frames and compare to protein databases + or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. - It is also possible to compare a protein or nucleotide query to a database of PSSM’s. - The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. - -Package: ncbi-blast-plus-dev -Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} -Description: Libraries and includes for development - Contains static libraries files and ncbi-tools++ includes. + It is also possible to compare a protein or nucleotide query to a + database of PSSM’s. + The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as + a network service. diff --git a/debian/ncbi-blast-plus-dev.docs b/debian/ncbi-blast-plus-dev.docs deleted file mode 100644 index 19923d64..00000000 --- a/debian/ncbi-blast-plus-dev.docs +++ /dev/null @@ -1 +0,0 @@ -include/util/bitset/license.txt diff --git a/debian/rules b/debian/rules index 34faab95..af6af44c 100755 --- a/debian/rules +++ b/debian/rules @@ -9,7 +9,7 @@ # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 -export DEB_CONFIGURE_EXTRA_FLAGS= --with-dll --without-debug --with-mt --without-gbench --without-internal --libdir=${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus --bindir=${CURDIR}/debian/ncbi-blast-plus/usr/bin --includedir=${CURDIR}/debian/ncbi-blast-plus/usr/include --without-dbapi --without-serial --without-objects --without-ncbi-crypt --without-3psw +export DEB_CONFIGURE_EXTRA_FLAGS= --with-dll --without-debug --with-mt --without-gbench --without-internal --libdir=${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus --bindir=${CURDIR}/debian/ncbi-blast-plus/usr/bin --includedir=${CURDIR}/debian/ncbi-blast-plus/usr/include --without-3psw --without-dbapi override_dh_auto_configure: ${CURDIR}/configure ${DEB_CONFIGURE_EXTRA_FLAGS} --prefix=${CURDIR}/debian/ncbi-blast-plus @@ -18,10 +18,12 @@ override_dh_auto_configure: override_dh_install: dh_install rm -f ${CURDIR}/debian/ncbi-blast-plus/usr/bin/*test* - mkdir -p ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus + #mkdir -p ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus + rm -f ${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus/*.a #mv ${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus/*.a ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus/ - mv ${CURDIR}/debian/ncbi-blast-plus/usr/include ${CURDIR}/debian/ncbi-blast-plus-dev/usr/ - + #mv ${CURDIR}/debian/ncbi-blast-plus/usr/include ${CURDIR}/debian/ncbi-blast-plus-dev/usr/ + rm -rf ${CURDIR}/debian/ncbi-blast-plus/usr/include + find ${CURDIR}/debian/ncbi-blast-plus/usr/bin/ -type f -not -name "*.p*" | xargs chrpath -d override_dh_clean: dh_clean -- 2.30.2