From d81f34bccc11d9f17f49a3494f0fafee26fc1569 Mon Sep 17 00:00:00 2001 From: Andreas Tille Date: Wed, 8 Nov 2023 09:39:43 +0100 Subject: [PATCH] Drop patch accepted upstream --- debian/patches/series | 1 - debian/patches/typos.patch | 50 -------------------------------------- 2 files changed, 51 deletions(-) delete mode 100644 debian/patches/typos.patch diff --git a/debian/patches/series b/debian/patches/series index d9e809a..43ee385 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,4 +1,3 @@ skip_test_remote.patch clean_less skip-test-on-32-bit.patch -typos.patch diff --git a/debian/patches/typos.patch b/debian/patches/typos.patch deleted file mode 100644 index 5201085..0000000 --- a/debian/patches/typos.patch +++ /dev/null @@ -1,50 +0,0 @@ -Description: fix typos caught by lintian. -Author: Étienne Mollier -Forwarded: https://github.com/pysam-developers/pysam/pull/1198 -Last-Update: 2023-06-23 ---- -This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ ---- python-pysam.orig/samtools/bam_ampliconclip.c -+++ python-pysam/samtools/bam_ampliconclip.c -@@ -1014,7 +1014,7 @@ - - if (param.tol < 0) { - fprintf(stderr, "[ampliconclip] warning: invalid tolerance of %d," -- " reseting tolerance to default of 5.\n", param.tol); -+ " resetting tolerance to default of 5.\n", param.tol); - param.tol = 5; - } - ---- python-pysam.orig/samtools/bam_ampliconclip.c.pysam.c -+++ python-pysam/samtools/bam_ampliconclip.c.pysam.c -@@ -1016,7 +1016,7 @@ - - if (param.tol < 0) { - fprintf(samtools_stderr, "[ampliconclip] warning: invalid tolerance of %d," -- " reseting tolerance to default of 5.\n", param.tol); -+ " resetting tolerance to default of 5.\n", param.tol); - param.tol = 5; - } - ---- python-pysam.orig/samtools/bamshuf.c -+++ python-pysam/samtools/bamshuf.c -@@ -537,7 +537,7 @@ - " -l INT Compression level [%d]\n" // DEF_CLEVEL - " -n INT Number of temporary files [%d]\n" // n_files - " -T PREFIX\n" -- " Write tempory files to PREFIX.nnnn.bam\n" -+ " Write temporary files to PREFIX.nnnn.bam\n" - " --no-PG do not add a PG line\n", - reads_store, DEF_CLEVEL, n_files); - ---- python-pysam.orig/samtools/bamshuf.c.pysam.c -+++ python-pysam/samtools/bamshuf.c.pysam.c -@@ -539,7 +539,7 @@ - " -l INT Compression level [%d]\n" // DEF_CLEVEL - " -n INT Number of temporary files [%d]\n" // n_files - " -T PREFIX\n" -- " Write tempory files to PREFIX.nnnn.bam\n" -+ " Write temporary files to PREFIX.nnnn.bam\n" - " --no-PG do not add a PG line\n", - reads_store, DEF_CLEVEL, n_files); - -- 2.30.2