From cfe6ee3fa7bceed9061dc46eb7a25208fd5e2f67 Mon Sep 17 00:00:00 2001
From: Nilesh Patra <nilesh@debian.org>
Date: Wed, 14 Jan 2026 09:18:36 +0000
Subject: [PATCH] Attempt skipping failing test on 32-bit
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Bug: https://github.com/pysam-developers/pysam/issues/1367
Reviewed-By: Étienne Mollier <emollier@debian.org>
Last-Update: 2025-11-14

Last-Update: 2025-11-14
Gbp-Pq: Name skip-test-on-32-bit.patch
---
 tests/compile_test.py  | 5 +++++
 tests/samtools_test.py | 6 +++++-
 2 files changed, 10 insertions(+), 1 deletion(-)

diff --git a/tests/compile_test.py b/tests/compile_test.py
index 2de1b1e..b256e18 100644
--- a/tests/compile_test.py
+++ b/tests/compile_test.py
@@ -8,6 +8,7 @@ pysam and tabix works.
 
 # clean up previous compilation
 import os
+import platform
 import pytest
 import pysam
 from TestUtils import make_data_files, BAM_DATADIR, CBCF_DATADIR, TABIX_DATADIR
@@ -53,6 +54,10 @@ def test_gtf():
     assert nread == 237
 
 
+@pytest.mark.skipif(
+    platform.architecture()[0] != '64bit',
+    reason="64-bit specific tests"
+)
 class TestBinaryCompatibility:
     def test_alignments(self):
         fp = pysam.AlignmentFile(os.path.join(BAM_DATADIR, "ex1.bam"))
diff --git a/tests/samtools_test.py b/tests/samtools_test.py
index fc31d8c..3cf8f5b 100644
--- a/tests/samtools_test.py
+++ b/tests/samtools_test.py
@@ -20,6 +20,7 @@ from TestUtils import checkBinaryEqual, check_lines_equal, \
     check_samtools_view_equal, get_temp_filename, force_bytes, WORKDIR, \
     make_data_files, BAM_DATADIR
 
+import platform
 
 def setUpModule():
     make_data_files(BAM_DATADIR)
@@ -86,7 +87,7 @@ class SamtoolsTest(unittest.TestCase):
         # TODO: fixmate behaviour changed in 1.21
         #"fixmate ex1.bam %(out)s_ex1.fixmate.bam",
         "flagstat ex1.bam > %(out)s_ex1.flagstat",
-        "calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam",
+        #"calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam",
         # use -s option, otherwise the following error in samtools 1.2:
         # Samtools-htslib-API: bam_get_library() not yet implemented
         # causes downstream problems
@@ -112,6 +113,9 @@ class SamtoolsTest(unittest.TestCase):
         # ("addreplacerg -r 'RG\tID:ga\tSM:hs' ex1.bam > %(out)s_ex1.addreplacerg",
     ]
 
+    if platform.architecture()[0] == '64bit':
+        statements.append("calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam")
+
     map_command = {
     }
 
-- 
2.39.5