From caf344fdcebcbbd77e5769ddec0d56572068dac2 Mon Sep 17 00:00:00 2001 From: =?utf8?q?=C3=89tienne=20Mollier?= Date: Fri, 23 Jun 2023 20:10:54 +0200 Subject: [PATCH] fix typos caught by lintian. Forwarded: https://github.com/pysam-developers/pysam/pull/1198 Last-Update: 2023-06-23 Last-Update: 2023-06-23 Gbp-Pq: Name typos.patch --- samtools/bam_ampliconclip.c | 2 +- samtools/bam_ampliconclip.c.pysam.c | 2 +- samtools/bamshuf.c | 2 +- samtools/bamshuf.c.pysam.c | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/samtools/bam_ampliconclip.c b/samtools/bam_ampliconclip.c index 91fc858..4310912 100644 --- a/samtools/bam_ampliconclip.c +++ b/samtools/bam_ampliconclip.c @@ -1014,7 +1014,7 @@ int amplicon_clip_main(int argc, char **argv) { if (param.tol < 0) { fprintf(stderr, "[ampliconclip] warning: invalid tolerance of %d," - " reseting tolerance to default of 5.\n", param.tol); + " resetting tolerance to default of 5.\n", param.tol); param.tol = 5; } diff --git a/samtools/bam_ampliconclip.c.pysam.c b/samtools/bam_ampliconclip.c.pysam.c index 4eb9c5a..178c57f 100644 --- a/samtools/bam_ampliconclip.c.pysam.c +++ b/samtools/bam_ampliconclip.c.pysam.c @@ -1016,7 +1016,7 @@ int amplicon_clip_main(int argc, char **argv) { if (param.tol < 0) { fprintf(samtools_stderr, "[ampliconclip] warning: invalid tolerance of %d," - " reseting tolerance to default of 5.\n", param.tol); + " resetting tolerance to default of 5.\n", param.tol); param.tol = 5; } diff --git a/samtools/bamshuf.c b/samtools/bamshuf.c index 05442bf..c297c5d 100644 --- a/samtools/bamshuf.c +++ b/samtools/bamshuf.c @@ -537,7 +537,7 @@ static int usage(FILE *fp, int n_files, int reads_store) { " -l INT Compression level [%d]\n" // DEF_CLEVEL " -n INT Number of temporary files [%d]\n" // n_files " -T PREFIX\n" - " Write tempory files to PREFIX.nnnn.bam\n" + " Write temporary files to PREFIX.nnnn.bam\n" " --no-PG do not add a PG line\n", reads_store, DEF_CLEVEL, n_files); diff --git a/samtools/bamshuf.c.pysam.c b/samtools/bamshuf.c.pysam.c index 6547b3c..e98bc8b 100644 --- a/samtools/bamshuf.c.pysam.c +++ b/samtools/bamshuf.c.pysam.c @@ -539,7 +539,7 @@ static int usage(FILE *fp, int n_files, int reads_store) { " -l INT Compression level [%d]\n" // DEF_CLEVEL " -n INT Number of temporary files [%d]\n" // n_files " -T PREFIX\n" - " Write tempory files to PREFIX.nnnn.bam\n" + " Write temporary files to PREFIX.nnnn.bam\n" " --no-PG do not add a PG line\n", reads_store, DEF_CLEVEL, n_files); -- 2.30.2