From c4c0289e292454c6bdab521c5153ccfbe8e5e467 Mon Sep 17 00:00:00 2001 From: =?utf8?q?=C3=89tienne=20Mollier?= Date: Sun, 12 May 2024 14:35:15 +0200 Subject: [PATCH] skip-test-on-32-bit.patch: refresh. --- debian/patches/skip-test-on-32-bit.patch | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/debian/patches/skip-test-on-32-bit.patch b/debian/patches/skip-test-on-32-bit.patch index 869696b..ff374f8 100644 --- a/debian/patches/skip-test-on-32-bit.patch +++ b/debian/patches/skip-test-on-32-bit.patch @@ -3,26 +3,26 @@ Author: Nilesh Patra Forwarded: not-needed Last-Update: 2021-10-15 --- ---- a/tests/samtools_test.py -+++ b/tests/samtools_test.py +--- python-pysam.orig/tests/samtools_test.py ++++ python-pysam/tests/samtools_test.py @@ -20,6 +20,7 @@ check_samtools_view_equal, get_temp_filename, force_bytes, WORKDIR, \ make_data_files, BAM_DATADIR +import platform - IS_PYTHON3 = sys.version_info[0] >= 3 - -@@ -92,7 +93,7 @@ + def setUpModule(): + make_data_files(BAM_DATADIR) +@@ -85,7 +86,7 @@ + "idxstats ex1.bam > %(out)s_ex1.idxstats", + "fixmate ex1.bam %(out)s_ex1.fixmate.bam", "flagstat ex1.bam > %(out)s_ex1.flagstat", - # Fails python 3.3 on linux, passes on OsX and when - # run locally - "calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam", + #"calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam", # use -s option, otherwise the following error in samtools 1.2: # Samtools-htslib-API: bam_get_library() not yet implemented # causes downstream problems -@@ -118,6 +119,9 @@ +@@ -111,6 +112,9 @@ # ("addreplacerg -r 'RG\tID:ga\tSM:hs' ex1.bam > %(out)s_ex1.addreplacerg", ] -- 2.30.2