From ac6d23d19a7a6818d22fa7aae6fa52595a520b24 Mon Sep 17 00:00:00 2001 From: Debian Med Packaging Team Date: Wed, 24 Sep 2014 12:24:11 +0000 Subject: [PATCH] debian-changes Gbp-Pq: Name debian-changes --- .travis.yml | 8 ++++++++ README.md | 17 +++++++++++++++++ 2 files changed, 25 insertions(+) create mode 100644 .travis.yml create mode 100644 README.md diff --git a/.travis.yml b/.travis.yml new file mode 100644 index 0000000..3e1c43a --- /dev/null +++ b/.travis.yml @@ -0,0 +1,8 @@ +# Control file for continuous integration testing at http://travis-ci.org/ + +language: c +compiler: + - clang + - gcc + +script: make -e && make test diff --git a/README.md b/README.md new file mode 100644 index 0000000..bcd1b6a --- /dev/null +++ b/README.md @@ -0,0 +1,17 @@ +HTSlib is an implementation of a unified C library for accessing common file +formats, such as [SAM, CRAM and VCF][1], used for high-throughput sequencing +data, and is the core library used by [samtools][2] and [bcftools][3]. +HTSlib only depends on [zlib][4]. +It is known to be compatible with gcc, g++ and clang. + +HTSlib implements a generalized BAM index, with file extension `.csi` +(coordinate-sorted index). The HTSlib file reader first looks for the new index +and then for the old if the new index is absent. + +This project also includes the popular tabix indexer, which indexes both `.tbi` +and `.csi` formats, and the bgzip compression utility. + +[1]: http://samtools.github.io/hts-specs/ +[2]: http://github.com/samtools/samtools +[3]: http://samtools.github.io/bcftools/ +[4]: http://zlib.net/ -- 2.30.2