From 923a99ea8225ba8989a0ae9fdac5d6f08e252aab Mon Sep 17 00:00:00 2001 From: Debian Med Packaging Team Date: Tue, 4 Jun 2024 13:31:55 +0000 Subject: [PATCH] fix test failure with htslib 1.20. MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit This data file contains invalid data, which is diagnosed by improvements in bam_parse_basemod2() in HTSlib 1.20. Updating these base modification data files to the versions in htslib and hts-specs corrects the problem. Author: John Marshall Origin: upstream, https://github.com/pysam-developers/pysam/issues/1291#issuecomment-2131146211 Bug: https://github.com/pysam-developers/pysam/issues/1291 Reviewed-by: Étienne Mollier Last-Update: 2024-05-29 Gbp-Pq: Name htslib-1.20.patch --- tests/pysam_data/MM-chebi.sam | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/pysam_data/MM-chebi.sam b/tests/pysam_data/MM-chebi.sam index 62920ec..28774d5 100644 --- a/tests/pysam_data/MM-chebi.sam +++ b/tests/pysam_data/MM-chebi.sam @@ -1,2 +1,2 @@ @CO Separate m, h and N modifications -* 0 * 0 0 * * 0 0 AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA * Mm:Z:C+m,2,2,1,4,1;C+76792,6,7;N+n,15; Ml:B:C,102,128,153,179,204,161,187,212,169 +* 0 * 0 0 * * 0 0 AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA * Mm:Z:C+m,2,2,1,4,1;C+76792,6,7;N+n,15; Ml:B:C,102,128,153,179,204,161,187,212 -- 2.30.2