From 8f48c352c71e994a0cc5238886c44b818524fb0a Mon Sep 17 00:00:00 2001 From: Steffen Moeller Date: Fri, 14 Sep 2018 15:04:10 +0200 Subject: [PATCH] Giving up for the moment - something deletes this file --- debian/patches/series | 2 +- debian/patches/skip_test_needing_missing_data.patch | 9 ++++----- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/debian/patches/series b/debian/patches/series index a5807b9..9a83180 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,2 +1,2 @@ skip_test_remote.patch -#skip_test_needing_missing_data.patch +skip_test_needing_missing_data.patch diff --git a/debian/patches/skip_test_needing_missing_data.patch b/debian/patches/skip_test_needing_missing_data.patch index 43a729f..d4f2563 100644 --- a/debian/patches/skip_test_needing_missing_data.patch +++ b/debian/patches/skip_test_needing_missing_data.patch @@ -8,7 +8,7 @@ Index: python-pysam/tests/AlignmentFile_test.py =================================================================== --- python-pysam.orig/tests/AlignmentFile_test.py +++ python-pysam/tests/AlignmentFile_test.py -@@ -1403,12 +1403,7 @@ class TestEmptyHeader(unittest.TestCase) +@@ -1402,11 +1402,6 @@ class TestEmptyHeader(unittest.TestCase) 'example_empty_header.bam')) self.assertEqual(s.header.to_dict(), {'SQ': [{'LN': 1000, 'SN': 'chr1'}]}) @@ -16,8 +16,7 @@ Index: python-pysam/tests/AlignmentFile_test.py - s = pysam.AlignmentFile(os.path.join(BAM_DATADIR, "example_no_seq_in_header.bam")) - self.assertTrue("SQ" in s.header.to_dict()) - self.assertTrue("@SQ" in str(s.header)) +- -- - class TestHeaderWithProgramOptions(unittest.TestCase): - - '''see issue 39.''' + class TestMismatchingHeader(unittest.TestCase): + '''see issue 716.''' -- 2.30.2