From 82ea8034de84f171182afc07351425841d4b5cf3 Mon Sep 17 00:00:00 2001
From: "Aaron M. Ucko" <ucko@debian.org>
Date: Sun, 29 May 2011 14:53:58 +0000
Subject: [PATCH] Override dh_auto_build to focus on selected subtrees and
 their dependencies (as made possible by running configure
 --with-flat-makefile).

---
 debian/rules | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/debian/rules b/debian/rules
index 0db1c1cf..a42525df 100755
--- a/debian/rules
+++ b/debian/rules
@@ -13,6 +13,7 @@ SOURCEDIR=${CURDIR}/c++
 DEB_CONFIGURE_EXTRA_FLAGS=--with-dll --with-mt --without-autodep \
     --without-makefile-auto-update --with-flat-makefile --without-dbapi \
     --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD
+proj=algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/
 
 # XXX - not quite right, as we get -DNDEBUG vs. -D_DEBUG
 ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
@@ -26,6 +27,9 @@ override_dh_auto_configure:
 	cd c++  &&  LD_LIBRARY_PATH=$(CURDIR)/c++/BUILD/lib \
 	    ./configure $(DEB_CONFIGURE_EXTRA_FLAGS)
 
+override_dh_auto_build:
+	cd c++/BUILD/build  &&  make -f Makefile.flat \
+	    all_projects="$(proj)"
 
 instroot = debian/ncbi-blast+/usr
 override_dh_auto_install:
-- 
2.30.2