From 80e9e2fd0cc5ecb9d0d8a53539aba122322a7e8b Mon Sep 17 00:00:00 2001 From: =?utf8?q?=C3=89tienne=20Mollier?= Date: Tue, 27 Dec 2022 11:35:48 +0100 Subject: [PATCH] disable-tests-python3.11.patch: add; work around test failure. Thanks: John Marshall and Graham Inggs Closes: #1024425 --- debian/patches/disable-tests-python3.11.patch | 28 +++++++++++++++++++ debian/patches/series | 1 + 2 files changed, 29 insertions(+) create mode 100644 debian/patches/disable-tests-python3.11.patch diff --git a/debian/patches/disable-tests-python3.11.patch b/debian/patches/disable-tests-python3.11.patch new file mode 100644 index 0000000..ecc9936 --- /dev/null +++ b/debian/patches/disable-tests-python3.11.patch @@ -0,0 +1,28 @@ +Description: skip tests bound to fail past python3.11. + Thanks John Marshall and Graham Inggs for the independent suggestion. +Author: Étienne Mollier +Bug: https://github.com/pysam-developers/pysam/issues/1151 +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1024425 +Last-Update: 2022-12-27 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- python-pysam.orig/tests/AlignmentFilePileup_test.py ++++ python-pysam/tests/AlignmentFilePileup_test.py +@@ -1,5 +1,6 @@ + """Benchmarking module for AlignmentFile functionality""" + import os ++import sys + import pysam + import unittest + from TestUtils import make_data_files, BAM_DATADIR, IS_PYTHON3, force_str, flatten_nested_list +@@ -206,6 +207,10 @@ + def tearDown(self): + self.samfile.close() + ++ @unittest.skipIf((sys.version_info.major == 3 ++ and sys.version_info.minor >= 11) ++ or sys.version_info.major >= 4, ++ "Test known to fail past python3.11.") + def testIteratorOutOfScope(self): + '''test if exception is raised if pileup col is accessed after + iterator is exhausted.''' diff --git a/debian/patches/series b/debian/patches/series index 43ee385..3e2bcd0 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,3 +1,4 @@ skip_test_remote.patch clean_less skip-test-on-32-bit.patch +disable-tests-python3.11.patch -- 2.30.2