From 75d69f12a1646f03ba36f8e5a9d59955b0b5ce12 Mon Sep 17 00:00:00 2001 From: "Aaron M. Ucko" Date: Sun, 26 Apr 2020 18:02:48 -0400 Subject: [PATCH] + d/patches/run_perl_directly for update_blastdb(.pl)'s #! line. --- debian/changelog | 3 ++- debian/patches/run_perl_directly | 12 ++++++++++++ debian/patches/series | 1 + 3 files changed, 15 insertions(+), 1 deletion(-) create mode 100644 debian/patches/run_perl_directly diff --git a/debian/changelog b/debian/changelog index 7cd98933..55840d44 100644 --- a/debian/changelog +++ b/debian/changelog @@ -5,13 +5,14 @@ ncbi-blast+ (2.10.0-1) UNRELEASED; urgency=medium - Formally refresh. (A few files needed straightforward manual intervention.) - support_gcc10: New, for formal support of GCC 10+. (Closes: #957581.) + - run_perl_directly: New, to streamline update_blastdb(.pl)'s #! line. * debian/rules: - override_dh_clean: Clean up new generated artifacts: fakehome/ and c++/include/common/ncbi_revision.h. - override_dh_install-arch: Install new cleanup-blastdb-volumes script without its upstream .py suffix. - -- Aaron M. Ucko Sun, 26 Apr 2020 18:00:53 -0400 + -- Aaron M. Ucko Sun, 26 Apr 2020 18:02:47 -0400 ncbi-blast+ (2.9.0-4) unstable; urgency=high diff --git a/debian/patches/run_perl_directly b/debian/patches/run_perl_directly new file mode 100644 index 00000000..0bf74899 --- /dev/null +++ b/debian/patches/run_perl_directly @@ -0,0 +1,12 @@ +Author: Aaron M. Ucko +Date: Sun Apr 26 11:28:03 2020 -0400 +Description: Bypass env in Perl script shebangs. + +--- a/c++/src/app/blast/update_blastdb.pl ++++ b/c++/src/app/blast/update_blastdb.pl +@@ -1,4 +1,4 @@ +-#!/usr/bin/env perl ++#!/usr/bin/perl + # $Id: update_blastdb.pl 597648 2019-11-25 18:31:12Z ivanov $ + # =========================================================================== + # diff --git a/debian/patches/series b/debian/patches/series index 164b5028..419fdd9f 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -14,3 +14,4 @@ system_mbedtls_only reprobuild spelling support_gcc10 +run_perl_directly -- 2.30.2