From 6d19cb40800a688509524cbedde377ecddaa8344 Mon Sep 17 00:00:00 2001 From: Debian Med Packaging Team Date: Sat, 31 Dec 2022 16:56:09 +0000 Subject: [PATCH] skip-test-on-32-bit Gbp-Pq: Name skip-test-on-32-bit.patch --- tests/samtools_test.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/tests/samtools_test.py b/tests/samtools_test.py index 7c40237..a824d91 100644 --- a/tests/samtools_test.py +++ b/tests/samtools_test.py @@ -20,6 +20,7 @@ from TestUtils import checkBinaryEqual, check_lines_equal, \ check_samtools_view_equal, get_temp_filename, force_bytes, WORKDIR, \ make_data_files, BAM_DATADIR +import platform IS_PYTHON3 = sys.version_info[0] >= 3 @@ -92,7 +93,7 @@ class SamtoolsTest(unittest.TestCase): "flagstat ex1.bam > %(out)s_ex1.flagstat", # Fails python 3.3 on linux, passes on OsX and when # run locally - "calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam", + #"calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam", # use -s option, otherwise the following error in samtools 1.2: # Samtools-htslib-API: bam_get_library() not yet implemented # causes downstream problems @@ -118,6 +119,9 @@ class SamtoolsTest(unittest.TestCase): # ("addreplacerg -r 'RG\tID:ga\tSM:hs' ex1.bam > %(out)s_ex1.addreplacerg", ] + if platform.architecture()[0] == '64bit': + statements.append("calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam") + map_command = { } -- 2.30.2