From 622705e52e2d0ebda4049c304c9677ec6d4bd68b Mon Sep 17 00:00:00 2001 From: Afif Elghraoui Date: Sat, 11 Jul 2015 14:03:24 -0700 Subject: [PATCH] refresh older patches --- debian/patches/adding-include-hts-dirs | 6 +++--- debian/patches/change-htslib-statement-to-link-to-debian | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/debian/patches/adding-include-hts-dirs b/debian/patches/adding-include-hts-dirs index ff5dd49..129fa82 100644 --- a/debian/patches/adding-include-hts-dirs +++ b/debian/patches/adding-include-hts-dirs @@ -1,7 +1,7 @@ Description: Added the include dirs ---- a/setup.py -+++ b/setup.py -@@ -92,6 +92,7 @@ +--- python-pysam.orig/setup.py ++++ python-pysam/setup.py +@@ -103,6 +103,7 @@ chtslib_sources = [] shared_htslib_sources = htslib_sources htslib_library_dirs = HTSLIB_LIBRARY_DIR diff --git a/debian/patches/change-htslib-statement-to-link-to-debian b/debian/patches/change-htslib-statement-to-link-to-debian index bd77a16..045e302 100644 --- a/debian/patches/change-htslib-statement-to-link-to-debian +++ b/debian/patches/change-htslib-statement-to-link-to-debian @@ -1,6 +1,6 @@ Description: Trying to bind to debian htslib ---- a/setup.py -+++ b/setup.py +--- python-pysam.orig/setup.py ++++ python-pysam/setup.py @@ -30,7 +30,7 @@ # pysam. # external: use shared libhts.so compiled outside of @@ -10,7 +10,7 @@ Description: Trying to bind to debian htslib HTSLIB_LIBRARY_DIR = os.environ.get('HTSLIB_LIBRARY_DIR', None) HTSLIB_INCLUDE_DIR = os.environ.get('HTSLIB_INCLUDE_DIR', None) -@@ -87,6 +87,12 @@ +@@ -98,6 +98,12 @@ htslib_library_dirs = ['pysam'] htslib_include_dirs = ['htslib'] htslib_libraries = ['chtslib'] -- 2.30.2