From 61b4c66cbe5ea8819e17b11d3c873d88be34d75e Mon Sep 17 00:00:00 2001 From: =?utf8?q?=C3=89tienne=20Mollier?= Date: Wed, 5 Feb 2025 21:19:21 +0100 Subject: [PATCH] htslib-1.20.patch: delete: applied upstream. --- debian/patches/htslib-1.20.patch | 19 ------------------- debian/patches/series | 1 - 2 files changed, 20 deletions(-) delete mode 100644 debian/patches/htslib-1.20.patch diff --git a/debian/patches/htslib-1.20.patch b/debian/patches/htslib-1.20.patch deleted file mode 100644 index 63a2389..0000000 --- a/debian/patches/htslib-1.20.patch +++ /dev/null @@ -1,19 +0,0 @@ -Description: fix test failure with htslib 1.20. - This data file contains invalid data, which is diagnosed by - improvements in bam_parse_basemod2() in HTSlib 1.20. Updating these - base modification data files to the versions in htslib and hts-specs - corrects the problem. - -Author: John Marshall -Origin: upstream, https://github.com/pysam-developers/pysam/issues/1291#issuecomment-2131146211 -Bug: https://github.com/pysam-developers/pysam/issues/1291 -Reviewed-by: Étienne Mollier -Last-Update: 2024-05-29 ---- -This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ ---- python-pysam.orig/tests/pysam_data/MM-chebi.sam -+++ python-pysam/tests/pysam_data/MM-chebi.sam -@@ -1,2 +1,2 @@ - @CO Separate m, h and N modifications --* 0 * 0 0 * * 0 0 AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA * Mm:Z:C+m,2,2,1,4,1;C+76792,6,7;N+n,15; Ml:B:C,102,128,153,179,204,161,187,212,169 -+* 0 * 0 0 * * 0 0 AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA * Mm:Z:C+m,2,2,1,4,1;C+76792,6,7;N+n,15; Ml:B:C,102,128,153,179,204,161,187,212 diff --git a/debian/patches/series b/debian/patches/series index 468debd..43ee385 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,4 +1,3 @@ skip_test_remote.patch clean_less skip-test-on-32-bit.patch -htslib-1.20.patch -- 2.39.5