From 5462ea03c0ad4b9349aa2034fee8ad4fa1803e9a Mon Sep 17 00:00:00 2001
From: Charles Plessy <plessy@debian.org>
Date: Tue, 1 Feb 2011 18:27:21 +0900
Subject: [PATCH] =?utf8?q?#=20Patch=20fixing=20upstream=20issue=20n=C2=B05?=
 =?utf8?q?4.?=
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Description: pytype not defined for FloatType tags
URL: http://code.google.com/p/pysam/issues/detail?id=54
---
 debian/patches/issue-54 | 13 +++++++++++++
 debian/patches/series   |  1 +
 2 files changed, 14 insertions(+)
 create mode 100644 debian/patches/issue-54
 create mode 100644 debian/patches/series

diff --git a/debian/patches/issue-54 b/debian/patches/issue-54
new file mode 100644
index 0000000..81b16ff
--- /dev/null
+++ b/debian/patches/issue-54
@@ -0,0 +1,13 @@
+diff --git a/pysam/csamtools.pyx b/pysam/csamtools.pyx
+index e94e0e6..39e136b 100644
+--- a/pysam/csamtools.pyx
++++ b/pysam/csamtools.pyx
+@@ -1599,7 +1599,7 @@ cdef class AlignedRead:
+                 for pytag, value in tags:
+                     t = type(value)
+                     if t == types.FloatType:
+-                        fmt = "<cccf"
++                        fmt, pytype = "<cccf", 'f'
+                     elif t == types.IntType:
+                         if value < 0:
+                             if value >= -127: fmt, pytype = "<cccb", 'c'
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..9bc2b4c
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+issue-54
-- 
2.30.2