ncbi-blast+.git
16 months agoNew upstream version 2.16.0+ds
Aaron M. Ucko [Fri, 26 Jul 2024 00:02:52 +0000 (20:02 -0400)]
New upstream version 2.16.0+ds

17 months agoNew upstream version 2.15.0+ds
Aaron M. Ucko [Thu, 18 Jul 2024 01:22:59 +0000 (21:22 -0400)]
New upstream version 2.15.0+ds

4 years agoNew upstream version 2.12.0+ds
Aaron M. Ucko [Thu, 2 Dec 2021 02:31:19 +0000 (21:31 -0500)]
New upstream version 2.12.0+ds

4 years agoNew upstream version 2.11.0+ds
Aaron M. Ucko [Wed, 27 Jan 2021 01:57:37 +0000 (20:57 -0500)]
New upstream version 2.11.0+ds

5 years agoNew upstream version 2.10.1+ds
Aaron M. Ucko [Fri, 23 Oct 2020 18:01:18 +0000 (14:01 -0400)]
New upstream version 2.10.1+ds

5 years agoNew upstream version 2.10.1
Aaron M. Ucko [Sun, 20 Sep 2020 00:57:21 +0000 (20:57 -0400)]
New upstream version 2.10.1

5 years agoNew upstream version 2.10.0
Aaron M. Ucko [Sun, 26 Apr 2020 01:41:38 +0000 (21:41 -0400)]
New upstream version 2.10.0

6 years agoNew upstream version 2.9.0
Olivier Sallou [Wed, 11 Sep 2019 07:42:44 +0000 (07:42 +0000)]
New upstream version 2.9.0

6 years agoNew upstream version 2.8.1
Aaron M. Ucko [Sun, 3 Feb 2019 15:38:33 +0000 (10:38 -0500)]
New upstream version 2.8.1

7 years agoNew upstream version 2.7.1
Olivier Sallou [Sat, 10 Feb 2018 17:32:50 +0000 (17:32 +0000)]
New upstream version 2.7.1

8 years agoNew upstream version 2.6.0
Olivier Sallou [Sun, 15 Jan 2017 17:12:04 +0000 (17:12 +0000)]
New upstream version 2.6.0

9 years agoImported Upstream version 2.4.0
Aaron M. Ucko [Wed, 3 Aug 2016 22:49:48 +0000 (18:49 -0400)]
Imported Upstream version 2.4.0

9 years agoImported Upstream version 2.4.0
Aaron M. Ucko [Wed, 3 Aug 2016 15:06:19 +0000 (11:06 -0400)]
Imported Upstream version 2.4.0

9 years agoImported Upstream version 2.3.0
Olivier Sallou [Wed, 13 Apr 2016 05:54:14 +0000 (07:54 +0200)]
Imported Upstream version 2.3.0

9 years agoImported Upstream version 2.3.0
Andreas Tille [Tue, 12 Apr 2016 12:52:30 +0000 (14:52 +0200)]
Imported Upstream version 2.3.0

9 years agoImported Upstream version 2.2.31
Andreas Tille [Tue, 12 Apr 2016 10:45:33 +0000 (12:45 +0200)]
Imported Upstream version 2.2.31

9 years agoSave time and do nothing for architecture independent builds
Andreas Tille [Thu, 7 Jan 2016 18:02:35 +0000 (18:02 +0000)]
Save time and do nothing for architecture independent builds

9 years agoReally enable building architecture independent package separately
Andreas Tille [Thu, 7 Jan 2016 17:48:30 +0000 (17:48 +0000)]
Really enable building architecture independent package separately

9 years agoDEP5 fixes and upload to unstable
Andreas Tille [Tue, 29 Dec 2015 07:13:47 +0000 (07:13 +0000)]
DEP5 fixes and upload to unstable

9 years agoDEP5 fixes
Andreas Tille [Mon, 28 Dec 2015 11:32:18 +0000 (11:32 +0000)]
DEP5 fixes

9 years agoOverride false lintian error
Andreas Tille [Mon, 28 Dec 2015 11:31:44 +0000 (11:31 +0000)]
Override false lintian error

9 years agoEnable building architecture independent package separately
Andreas Tille [Mon, 28 Dec 2015 11:30:59 +0000 (11:30 +0000)]
Enable building architecture independent package separately

9 years agoThere seems to be no change of upstream source any more
Andreas Tille [Mon, 28 Dec 2015 09:27:25 +0000 (09:27 +0000)]
There seems to be no change of upstream source any more

9 years agoDrop explicite mentioning of quilt
Andreas Tille [Mon, 28 Dec 2015 09:27:04 +0000 (09:27 +0000)]
Drop explicite mentioning of quilt

10 years agofix missing colon causing FTBS on some archs
Olivier Sallou [Fri, 11 Dec 2015 08:50:24 +0000 (08:50 +0000)]
fix missing colon causing FTBS on some archs

10 years agoupload release 2.2.31
Olivier Sallou [Thu, 10 Dec 2015 14:13:09 +0000 (14:13 +0000)]
upload release 2.2.31

10 years agoprepare new upstream release 2.2.31
Olivier Sallou [Thu, 10 Dec 2015 13:00:26 +0000 (13:00 +0000)]
prepare new upstream release 2.2.31

10 years agoReally finalize ncbi-blast+ 2.2.30-4 for upload to unstable.
Aaron M. Ucko [Thu, 2 Jul 2015 20:22:41 +0000 (20:22 +0000)]
Really finalize ncbi-blast+ 2.2.30-4 for upload to unstable.

10 years agoFinalize ncbi-blast+ 2.2.30-4 for upload to unstable.
Aaron M. Ucko [Thu, 2 Jul 2015 20:21:57 +0000 (20:21 +0000)]
Finalize ncbi-blast+ 2.2.30-4 for upload to unstable.

10 years agod/patches/fix_compilation: Add an upstream patch to
Aaron M. Ucko [Thu, 2 Jul 2015 20:20:51 +0000 (20:20 +0000)]
d/patches/fix_compilation: Add an upstream patch to
include/util/bitset/bmconst.h to fix builds with GCC 5 on platforms
such as arm64 on which char is unsigned.  (Closes: #790667.)

10 years agoStart work on ncbi-blast+ 2.2.30-4, to address #790667 (compilation
Aaron M. Ucko [Thu, 2 Jul 2015 20:16:40 +0000 (20:16 +0000)]
Start work on ncbi-blast+ 2.2.30-4, to address #790667 (compilation
errors with GCC 5 on platforms such as arm64 on which char is unsigned).

10 years agoadd changelog entry for unstable upload after experimental
Olivier Sallou [Mon, 18 May 2015 12:35:48 +0000 (12:35 +0000)]
add changelog entry for unstable upload after experimental

10 years agoupload to unstable
Olivier Sallou [Mon, 18 May 2015 09:41:36 +0000 (09:41 +0000)]
upload to unstable

10 years agoFinalize ncbi-blast+ 2.2.30-2 for upload to experimental.
Aaron M. Ucko [Tue, 17 Feb 2015 03:39:08 +0000 (03:39 +0000)]
Finalize ncbi-blast+ 2.2.30-2 for upload to experimental.

10 years agod/patches/allow_gcc5 (new): Allow compilation with GCC 5, per upstream.
Aaron M. Ucko [Tue, 17 Feb 2015 03:38:41 +0000 (03:38 +0000)]
d/patches/allow_gcc5 (new): Allow compilation with GCC 5, per upstream.
(Closes: #778021.)

10 years agoStart work on ncbi-blast+ 2.2.30-2, to address GCC 5 FTBFS #778021.
Aaron M. Ucko [Tue, 17 Feb 2015 03:29:35 +0000 (03:29 +0000)]
Start work on ncbi-blast+ 2.2.30-2, to address GCC 5 FTBFS #778021.

10 years agochangelog: 2.2.30-1 went to experimental.
Aaron M. Ucko [Tue, 17 Feb 2015 03:27:36 +0000 (03:27 +0000)]
changelog: 2.2.30-1 went to experimental.

11 years agoupdate changes and patch header
Olivier Sallou [Sun, 14 Dec 2014 12:23:05 +0000 (12:23 +0000)]
update changes and patch header

11 years agoupdate patches to fix compilation issues
Olivier Sallou [Sun, 14 Dec 2014 10:48:04 +0000 (10:48 +0000)]
update patches to fix compilation issues

11 years agoadapt patches to new release, add status to changelog
Olivier Sallou [Tue, 25 Nov 2014 17:44:08 +0000 (17:44 +0000)]
adapt patches to new release, add status to changelog

11 years agoadapt patches to new release
Olivier Sallou [Sat, 22 Nov 2014 14:32:04 +0000 (14:32 +0000)]
adapt patches to new release

11 years agoupdate patch to match new release
Olivier Sallou [Fri, 21 Nov 2014 17:36:05 +0000 (17:36 +0000)]
update patch to match new release

11 years agoprepare new release 2.2.30
Olivier Sallou [Fri, 21 Nov 2014 17:24:23 +0000 (17:24 +0000)]
prepare new release 2.2.30

11 years agoFinalize ncbi-blast+ 2.2.29-3 for upload to unstable.
Aaron M. Ucko [Tue, 1 Jul 2014 22:27:50 +0000 (22:27 +0000)]
Finalize ncbi-blast+ 2.2.29-3 for upload to unstable.

11 years agoStandards-Version: 3.9.4. (Already compliant.)
Aaron M. Ucko [Mon, 30 Jun 2014 15:03:51 +0000 (15:03 +0000)]
Standards-Version: 3.9.4.  (Already compliant.)

11 years agodebian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
Aaron M. Ucko [Mon, 30 Jun 2014 15:02:48 +0000 (15:02 +0000)]
debian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
ensure sufficient coverage; fix typos in patch headers.  (Closes: #753190.)

11 years agoStart work on ncbi-blast+ 2.2.29-3, to fix #753190 for real.
Aaron M. Ucko [Mon, 30 Jun 2014 14:59:16 +0000 (14:59 +0000)]
Start work on ncbi-blast+ 2.2.29-3, to fix #753190 for real.

11 years agoadd patch headers
Olivier Sallou [Mon, 30 Jun 2014 08:36:48 +0000 (08:36 +0000)]
add patch headers

11 years agofix include issue with recent compiler
Olivier Sallou [Mon, 30 Jun 2014 08:35:25 +0000 (08:35 +0000)]
fix include issue with recent compiler

11 years agoprevent cleanup of configure.orig
Olivier Sallou [Sat, 7 Jun 2014 07:29:26 +0000 (07:29 +0000)]
prevent cleanup of configure.orig

11 years agofix fuzz in patch
Olivier Sallou [Sat, 7 Jun 2014 07:12:21 +0000 (07:12 +0000)]
fix fuzz in patch

11 years agoprepare new upload 2.2.29
Olivier Sallou [Sat, 7 Jun 2014 07:10:49 +0000 (07:10 +0000)]
prepare new upload 2.2.29

11 years agoadd missing dep on submit
Olivier Sallou [Sat, 7 Jun 2014 07:10:19 +0000 (07:10 +0000)]
add missing dep on submit

11 years agoAdd patch to fix way to find configure script for Debian build
Olivier Sallou [Fri, 6 Jun 2014 21:11:36 +0000 (21:11 +0000)]
Add patch to fix way to find configure script for Debian build

11 years agoupdate patches for new upstream release 2.2.29
Olivier Sallou [Fri, 6 Jun 2014 20:53:24 +0000 (20:53 +0000)]
update patches for new upstream release 2.2.29

12 years agoFinalize ncbi-blast+ 2.2.28-2 for upload to unstable.
Aaron M. Ucko [Mon, 3 Jun 2013 03:00:49 +0000 (03:00 +0000)]
Finalize ncbi-blast+ 2.2.28-2 for upload to unstable.

12 years agoStandards-Version: 3.9.4. (Already compliant.)
Aaron M. Ucko [Mon, 3 Jun 2013 03:00:27 +0000 (03:00 +0000)]
Standards-Version: 3.9.4.  (Already compliant.)

12 years ago* debian/patches/use_pie_for_apps: Explicitly build all executables with
Aaron M. Ucko [Mon, 3 Jun 2013 02:59:12 +0000 (02:59 +0000)]
* debian/patches/use_pie_for_apps: Explicitly build all executables with
  -fPIE -pie, to avoid giving project_tree_builder a partial PIE
  treatment that now fails on mips and mipsel.  (Closes: #710807.)
* debian/rules: Retire redundant APP_LDFLAGS override.

12 years agoStart work on ncbi-blast+ 2.2.28-2, to fix mips* FTBFS (#710807).
Aaron M. Ucko [Mon, 3 Jun 2013 02:55:44 +0000 (02:55 +0000)]
Start work on ncbi-blast+ 2.2.28-2, to fix mips* FTBFS (#710807).

12 years agoadd info on fortify lintian warnings
Olivier Sallou [Sat, 1 Jun 2013 12:34:25 +0000 (12:34 +0000)]
add info on fortify lintian warnings

12 years agoadd missing dep
Olivier Sallou [Sat, 1 Jun 2013 11:53:49 +0000 (11:53 +0000)]
add missing dep

12 years agoadd headers to patches, prepare for upload
Olivier Sallou [Sat, 1 Jun 2013 11:07:50 +0000 (11:07 +0000)]
add headers to patches, prepare for upload

12 years agoremove deprecated parameter
Olivier Sallou [Sat, 1 Jun 2013 07:38:29 +0000 (07:38 +0000)]
remove deprecated parameter

12 years agonew upstream 2.2.28, include updates from T. Booth from Ubuntu to compile this release
Olivier Sallou [Sat, 1 Jun 2013 07:37:36 +0000 (07:37 +0000)]
new upstream 2.2.28, include updates from T. Booth from Ubuntu to compile this release

13 years agoadd patch to series
Olivier Sallou [Fri, 5 Oct 2012 13:36:54 +0000 (13:36 +0000)]
add patch to series

13 years agofix tab issue
Olivier Sallou [Fri, 5 Oct 2012 08:07:23 +0000 (08:07 +0000)]
fix tab issue

13 years agorelease to fix conflict with blast2
Olivier Sallou [Fri, 5 Oct 2012 08:06:34 +0000 (08:06 +0000)]
release to fix conflict with blast2

13 years agoadd info for sparc buildd errors
Olivier Sallou [Thu, 27 Sep 2012 07:41:34 +0000 (07:41 +0000)]
add info for sparc buildd errors

13 years agorename seedtop to seedtop+ to fix #688684
Olivier Sallou [Thu, 27 Sep 2012 07:40:33 +0000 (07:40 +0000)]
rename seedtop to seedtop+ to fix #688684

13 years agoadd patch for arm/mips FTBS
Olivier Sallou [Tue, 25 Sep 2012 08:44:44 +0000 (08:44 +0000)]
add patch for arm/mips FTBS

13 years agoremove fuzzy patch data
Olivier Sallou [Fri, 21 Sep 2012 16:23:53 +0000 (16:23 +0000)]
remove fuzzy patch data

13 years agoset new upstream release 2.2.27
Olivier Sallou [Fri, 21 Sep 2012 16:22:13 +0000 (16:22 +0000)]
set new upstream release 2.2.27

13 years agoupdate patches for new release
Olivier Sallou [Fri, 21 Sep 2012 16:21:40 +0000 (16:21 +0000)]
update patches for new release

13 years agofix clean target
Olivier Sallou [Fri, 21 Sep 2012 16:21:15 +0000 (16:21 +0000)]
fix clean target

13 years agoremove fixed bug patches
Olivier Sallou [Fri, 21 Sep 2012 16:21:04 +0000 (16:21 +0000)]
remove fixed bug patches

13 years agoFinalize ncbi-blast+ 2.2.26-3 for upload to unstable.
Aaron M. Ucko [Fri, 11 May 2012 03:42:56 +0000 (03:42 +0000)]
Finalize ncbi-blast+ 2.2.26-3 for upload to unstable.

13 years agoncbi-blast+: Use upstream's new --with-symbols flag in nostrip builds.
Aaron M. Ucko [Fri, 11 May 2012 03:40:45 +0000 (03:40 +0000)]
ncbi-blast+: Use upstream's new --with-symbols flag in nostrip builds.

13 years agoncbi-blast+: Enable full hardening flags, introducing a small patch
Aaron M. Ucko [Fri, 11 May 2012 03:32:08 +0000 (03:32 +0000)]
ncbi-blast+: Enable full hardening flags, introducing a small patch
(use_pie_for_apps) to reflect the need to build executables and
libraries differently.

13 years agoncbi-blast+: Wrap and sort build dependencies to ease maintenance thereof.
Aaron M. Ucko [Fri, 11 May 2012 03:29:27 +0000 (03:29 +0000)]
ncbi-blast+: Wrap and sort build dependencies to ease maintenance thereof.

13 years agodebian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
Aaron M. Ucko [Fri, 11 May 2012 00:37:37 +0000 (00:37 +0000)]
debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
errors and warnings.  (Closes: #669679.)
* Explicitly qualify more dependent names originating in base templates.
* Directly #include headers as needed.
* Use modern syntax for making protected base members public.
* Add forward declarations as needed.

13 years agoncbi-blast+: Note Andreas's Vcs-* modernization in debian/changelog.
Aaron M. Ucko [Thu, 10 May 2012 22:27:09 +0000 (22:27 +0000)]
ncbi-blast+: Note Andreas's Vcs-* modernization in debian/changelog.

13 years agoStart work on ncbi-blast+ 2.2.26-3.
Aaron M. Ucko [Thu, 10 May 2012 22:23:56 +0000 (22:23 +0000)]
Start work on ncbi-blast+ 2.2.26-3.

13 years agoFix Vcs fields globally in all remaining packages because I'm bored by warnings in...
Andreas Tille [Wed, 9 May 2012 19:25:55 +0000 (19:25 +0000)]
Fix Vcs fields globally in all remaining packages because I'm bored by warnings in logfiles when investigating machine readable files of not yet uploaded packages

13 years agofixed rpath issuer on patch, set back to unstable for upload
Olivier Sallou [Tue, 13 Mar 2012 08:29:41 +0000 (08:29 +0000)]
fixed rpath issuer on patch, set back to unstable for upload

13 years agorevert to UNRELEASE, need more fixes in patch
Olivier Sallou [Mon, 12 Mar 2012 17:11:08 +0000 (17:11 +0000)]
revert to UNRELEASE, need more fixes in patch

13 years agofix upstream bug for Hurd build
Olivier Sallou [Mon, 12 Mar 2012 16:05:37 +0000 (16:05 +0000)]
fix upstream bug for Hurd build

13 years agochange my uploader address, change URL of copyright format
Olivier Sallou [Wed, 7 Mar 2012 15:39:14 +0000 (15:39 +0000)]
change my uploader address, change URL of copyright format

13 years agoset back to unstable for upload after patches update
Olivier Sallou [Wed, 7 Mar 2012 14:39:40 +0000 (14:39 +0000)]
set back to unstable for upload after patches update

13 years agofix offset/fuzz errors in patch after upstream release update
Olivier Sallou [Wed, 7 Mar 2012 11:59:34 +0000 (11:59 +0000)]
fix offset/fuzz errors in patch after upstream release update

13 years agorevert to UNRELEASED, need to update patches for offset/fuzz errors
Olivier Sallou [Wed, 7 Mar 2012 11:56:08 +0000 (11:56 +0000)]
revert to UNRELEASED, need to update patches for offset/fuzz errors

13 years agoupdate for new upstream release
Olivier Sallou [Wed, 7 Mar 2012 11:02:16 +0000 (11:02 +0000)]
update for new upstream release

13 years agoAdded upstream contact
Andreas Tille [Thu, 22 Dec 2011 16:42:09 +0000 (16:42 +0000)]
Added upstream contact

13 years agoPatch description
Andreas Tille [Wed, 21 Dec 2011 21:24:58 +0000 (21:24 +0000)]
Patch description

13 years agoPatch for more sensible output of a perl script; Depends python (as needed by a pytho...
Andreas Tille [Wed, 21 Dec 2011 16:44:13 +0000 (16:44 +0000)]
Patch for more sensible output of a perl script; Depends python (as needed by a python script); DEP5 fixes

14 years agoadd patch info, reduce log size
Olivier Sallou [Mon, 3 Oct 2011 11:36:25 +0000 (11:36 +0000)]
add patch info, reduce log size

14 years agofix typo
Olivier Sallou [Mon, 3 Oct 2011 09:25:15 +0000 (09:25 +0000)]
fix typo

14 years agoadd comments regarding bug 642991 and add gene_info_reader to package
Olivier Sallou [Mon, 3 Oct 2011 08:04:09 +0000 (08:04 +0000)]
add comments regarding bug 642991 and add gene_info_reader to package

14 years agoFinalize ncbi-blast+ 2.2.25-5 for upload to unstable.
Aaron M. Ucko [Mon, 29 Aug 2011 16:31:14 +0000 (16:31 +0000)]
Finalize ncbi-blast+ 2.2.25-5 for upload to unstable.

14 years agoAddress ncbi-blast+'s continued failure to build on the Hurd
Aaron M. Ucko [Mon, 29 Aug 2011 16:28:20 +0000 (16:28 +0000)]
Address ncbi-blast+'s continued failure to build on the Hurd
(accidentally broken by the fix for #633567):
* debian/patches/hurd_fixes: further patch configure(.ac) to reflect
  -Wl,rpath,... support.  (Closes: #629656.)
* debian/patches/fix_lib_deps: link makembindex and srsearch against
  libxconnect rather than libconnect for consistency with libblast,
  which uses the former for consistency with other projects.

14 years agoStart work on ncbi-blast+ 2.2.25-5.
Aaron M. Ucko [Mon, 29 Aug 2011 16:10:10 +0000 (16:10 +0000)]
Start work on ncbi-blast+ 2.2.25-5.