Joey Hess [Thu, 5 Jan 2023 17:16:15 +0000 (13:16 -0400)]
move old fixed datalad/dandi/repronim bugs to the project pages
This is to cut down on the number of files in bugs/, which makes it slow
to file new bug reports or update active bug reports. These old bugs
were about 1/3rd of the files in there. These projects want lists of
their old bugs to still be accessible, and have the lists on their
project pages, which will still list the old bugs.
Commands used:
for f in $(git grep -l '\[\[!tag projects/dandi\]\]'); do if grep -q 'done\]\]' "$f"; then git mv "$f" ../projects/dandi/bugs-done; g=$(echo "$f" | sed 's/.mdwn//'); if [ -d "$g" ]; then git mv "$g" ../projects/dandi/bugs-done; fi; fi; done
for f in $(git grep -l '\[\[!tag projects/repronim\]\]'); do if grep -q 'done\]\]' "$f"; then git mv "$f" ../projects/repronim/bugs-done; g=$(echo "$f" | sed 's/.mdwn//'); if [ -d "$g" ]; then git mv "$g" ../projects/repronim/bugs-done; fi; fi; done
for f in $(git grep -l '\[\[!tag projects/datalad\]\]'); do if grep -q 'done\]\]' "$f"; then git mv "$f" ../projects/datalad/bugs-done; g=$(echo "$f" | sed 's/.mdwn//'); if [ -d "$g" ]; then git mv "$g" ../projects/datalad/bugs-done; fi; fi; done
That assumes that bugs are not tagged by multiple projects at the same
time. Of the ones I moved, I've checked and none are.
Could do the same with todo/ but there are only 370 files in there, and
less than 84 of them could be moved this way, which does not seem likely
to produce a sizeable speedup.
Joey Hess [Mon, 26 Dec 2022 16:42:45 +0000 (12:42 -0400)]
Removed the vendored git-lfs and the GitLfs build flag
AFAICS all git-annex builds are using the git-lfs library not the vendored
copy.
Debian stable does have a too old haskell-git-lfs package to be able to
build git-annex from source, but there is not currently a backport of a
recent git-annex to Debian stable. And if they update the backport at some
point, they should be able to backport the library too.
Joey Hess [Thu, 22 Dec 2022 19:15:25 +0000 (15:15 -0400)]
Added libgcc_s.so.1 to the linux standalone build so pthread_cancel will work
In Makefile, listed additional deps of Build/Standalone. Without that,
it does not get updated for the change to Utility/LinuxMkLibs.hs when
compiling incrementally.
Joey Hess [Thu, 22 Dec 2022 18:26:35 +0000 (14:26 -0400)]
switch to readMaybe to handle values with leading number followed by non-number
readish ignores a trailing string after a number, but to support values
like "YYYY:MM:DD" which it makes sense to compare lexographically,
require the whole string to be parsed as a number in order to enable
numeric comparison.
Joey Hess [Tue, 20 Dec 2022 20:02:42 +0000 (16:02 -0400)]
use status --ignore-submodules in configureSmudgeFilter
Speed up git-annex upgrade (from v5) and init in a repository that has
submodules. Setting the config does not affect the submodules, so avoid
the work of getting status in them, which may involve using the smudge
filter etc.
Sponsored-By: the NIH-funded NICEMAN (ReproNim TR&D3) project
Joey Hess [Tue, 20 Dec 2022 19:42:34 +0000 (15:42 -0400)]
--anything and --nothing
Added --anything (and --nothing). Eg, git-annex find --anything will list
all annexed files whether or not the content is present. This is slightly
faster and clearer than --include=* or --exclude=*
While I can't imagine how --nothing will be used, preferred content
expressions already had anything and nothing, so might as well support both
as matching options as well.
Joey Hess [Tue, 20 Dec 2022 19:17:50 +0000 (15:17 -0400)]
convert renameFile to moveFile to support cross-device moves
Improve handling of some .git/annex/ subdirectories being on other
filesystems, in the bittorrent special remote, and youtube-dl integration,
and git-annex addurl.
The only one of these that I've confirmed to be a problem is in the
bittorrent special remote when .git/annex/tmp and .git/annex/othertmp are
on different filesystems.
As well as auditing for renameFile, also audited for createLink, all of
those are ok as are the other remaining renameFile calls. Also audited all
code paths that use .git/annex/othertmp, and did not find any other
cross-device problems. So, removing mention of othertmp needing to be on
the same device.
The restage.log was kept locked while running a complex index refresh
action. In an unusual situation, that action could need to write to the
restage log, which caused a deadlock.
The solution is a two-stage process. First the restage.log is moved to a
work file, which is done with the lock held. Then the content of the work
file is read and processed, which happens without the lock being held.
This is all done in a crash-safe manner.
Note that streamRestageLog may not be fully safe to run concurrently
with itself. That's ok, because restagePointerFiles uses it with the
index lock held, so only one can be run at a time.
streamRestageLog does delete the restage.old file at the end without
locking. If a calcRestageLog is run concurrently, it will either see the
file content before it was deleted, or will see it's missing. Either is
ok, because at most this will cause calcRestageLog to report more
work remains to be done than there is.
Joey Hess [Wed, 7 Dec 2022 17:46:16 +0000 (13:46 -0400)]
speed up --pattern
The splitting of the tests into parts for parallelism made --pattern
do extra work, because init tests have to be run for each part, but
many of the parts are empty.
For example, git-annex test --pattern '/move (ssh remote)/'
took 12 seconds to run before. This improves the runtime to 4 seconds.
projects / git-annex.git / log