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Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
test_seasonal_order fails on i386
Warn on use and xfail
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name xfail_i386_ets.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Xfail / increase tolerance on tests
TestMICE and test_mixedlm vary enough with the random state, and
corrpsd is close enough to 0, that this is plausibly a rounding non-bug
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/997081
Forwarded: https://github.com/statsmodels/statsmodels/issues/7911
Gbp-Pq: Name 997081_xfail.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Warn that armel may be broken
armel tests sometimes crash (ignored in d/rules)
Wrong answers have previously been seen on armel, and
could be hidden by the crash
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/968210
Forwarded: no
Gbp-Pq: Name 968210_warn_armel_untested.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Remove code from Stack Overflow and wasteful loop
Stack Overflow content is CC-BY-SA licensed,
which this package is not supposed to be. This snippet may be
too small to be copyrightable, but removing it to be safe.
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name remove_ccbysa_snippet.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Allow tests to fail if multiprocessing is not available
This is currently the case on hurd-i386
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name xfail_no_multiprocessing.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Fix typos
Origin: lintian
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name spelling.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Use local requirejs/mathjax
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name sphinx_local_requirejs.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Avoid NaN crash in test_structural
Out-of-range frequency.cycle starting values make untransform_params return NaN,
which crashes summary()
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name fix_test_bounds.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Don't fail documentation build on examples exceptions
If example code outputs an error when run,
ipython (ipython:: blocks) now fails the whole build by default,
and tools/nbgenerate.py (.ipynb files) now leaves out that file
(leaving a broken link in the examples index).
As some examples use downloaded data and are hence expected to be
unrunnable on a Debian buildd, this instead keeps them
(::ipython with error output, .ipynb without output).
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name sphinx_ignore_errors.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Don't try to use a theme we don't have
Upstream switched to sphinx_material in
1d7aafad5c3ad634c9ae2122881c1809c2ccbcbe
and Debian doesn't have that theme.
(I haven't investigated packaging it, which might be a better long-term option.)
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed (except maybe the version fix? or is that no longer needed at all?)
Gbp-Pq: Name no_sphinx_material.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Make the module reference tables appear
Our numpydoc is old enough to still need this manually set
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug: https://github.com/numpy/numpydoc/issues/141
Forwarded: not-needed
Gbp-Pq: Name sphinx_autosummary.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Xfail or loosen tolerances on flaky tests
The test_nondiagonal_obs_cov one hasn't yet been seen in Debian
but is known in upstream CI:
https://github.com/statsmodels/statsmodels/pull/6475#issuecomment-
581151072
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>, Graham Inggs
Bug-Debian: https://bugs.debian.org/944054
Forwarded: no
Gbp-Pq: Name 944054_flaky_tests.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Don't try to write to the source directory
Not allowed in autopkgtest
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name use_tmp_path.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Use Python 3 in script shebangs
(Skipping the two .pyx files with #!python - they need to be compiled
with Cython, not directly run with any version of plain Python)
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name python3_shebangs.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Loosen tolerances on some tests on i386
and xfail a test that fails for not producing ConvergenceWarning.
Failure logs:
test_smoothing
https://buildd.debian.org/status/fetch.php?pkg=statsmodels&arch=i386&ver=0.9.0-3&stamp=
1567157609&raw=0
test_multivariate_switch_univariate
https://buildd.debian.org/status/fetch.php?pkg=statsmodels&arch=i386&ver=0.12.0-1&stamp=
1599693472&raw=0
As it only fails on i386 and isn't far wrong,
I suspect different rounding due to x87 excess precision
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/938949
Forwarded: no
Gbp-Pq: Name i386_loosen_test_tolerances.patch
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Use example data from an R package we have
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name use_available_data.patch
Diane Trout [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Use intersphinx inventory files from other Debian packages.
Forwarded: not-needed
Gbp-Pq: Name use-system-inventory
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
to prevent failed test on i386
Author: Yaroslav Halchenko <debian@onerussian.com>
Bug: https://github.com/statsmodels/statsmodels/issues/1831
Forwarded: upstream consider this probably fixed
Gbp-Pq: Name up_reduce_test_precision
Debian Science Maintainers [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Use cached datasets in tests and examples
Also remove a download that isn't actually used in that example.
This allows the tests to pass, and at least some of the examples to
be built, in an offline environment such as a Debian buildd.
The cached data is extracted from R packages by debian/datasets/*.
Author: Diane Trout <diane@ghic.org>, Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name use-cached-datasets
Rebecca N. Palmer [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
statsmodels (0.13.5+dfsg-1) unstable; urgency=medium
* Upstream bugfix release. Drop / refresh patches, d/copyright.
* Update Build-Depends.
* Bump Standards-Version to 4.6.1 (no changes needed).
* Tests: remove xfails that appear to no longer be needed.
* Tests: loosen tolerance on TestDynamicFactor_ar2_errors as it
appears to be unstable. (Closes: #
1020060, #
1014278)
[dgit import unpatched statsmodels 0.13.5+dfsg-1]
Rebecca N. Palmer [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Import statsmodels_0.13.5+dfsg.orig.tar.xz
[dgit import orig statsmodels_0.13.5+dfsg.orig.tar.xz]
Rebecca N. Palmer [Wed, 30 Nov 2022 21:29:37 +0000 (21:29 +0000)]
Import statsmodels_0.13.5+dfsg-1.debian.tar.xz
[dgit import tarball statsmodels 0.13.5+dfsg-1 statsmodels_0.13.5+dfsg-1.debian.tar.xz]