d/*.lintian-overrides: remove unused overrides.

d/control: add myself to uploaders.

d/*.lintian-overrides: refresh mismatches.

test-truncated-bam.patch: added; fix test truncated BAM failure.

Thanks: John Marshall

Remove unused license definitions for LGPL-2.1+, BSD-3-clause.

Changes-By: lintian-brush
Fixes: lintian: unused-license-paragraph-in-dep5-copyright
See-also: https://lintian.debian.org/tags/unused-license-paragraph-in-dep5-copyright.html

routine-update: Standards-Version: 4.6.1

Update upstream source from tag 'upstream/0.19.1+ds'

Update to upstream version '0.19.1+ds'
with Debian dir 8d6067cf8e6433e7474d1bfcaaa7dc7205ee6434

routine-update: New upstream version

New upstream version 0.19.1+ds

Upload to experimental

Bump Build-Depends: libhts-dev (>= 1.14~)

Remove superflous file patterns from debian/copyright

Upload to experimental

Update upstream source from tag 'upstream/0.18.0+ds'

Update to upstream version '0.18.0+ds'
with Debian dir fbe513c606d10f93e294607f45f5cce098219fe3

New upstream version 0.18.0+ds

Remove also win32 dir from upstream code (and when beeing at it also .github and .gitignore)

Drop outdated and unused tests

Remove constraints unnecessary since buster

* Build-Depends: Drop versioned constraint on bcftools, libhts-dev and samtools.

Changes-By: deb-scrub-obsolete

Avoid explicitly specifying -Wl,--as-needed linker flag.

Changes-By: lintian-brush
Fixes: lintian: debian-rules-uses-as-needed-linker-flag
See-also: https://lintian.debian.org/tags/debian-rules-uses-as-needed-linker-flag.html

Update renamed lintian tag names in lintian overrides.

Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html

routine-update: No tab in license text

Update upstream source from tag 'upstream/0.18.0+ds'

Update to upstream version '0.18.0+ds'
with Debian dir 56361846805f33ba070134821867efdb2fd1768a

New upstream version 0.18.0+ds

routine-update: New upstream version

Upload to unstable

Attempt skipping failing test on 32-bit

Upload to experimental

Interim changelog entry

Rediff patches

Bump watch file version to 4

Standards version: 4.6.0

Update upstream source from tag 'upstream/0.17.0+ds'

Update to upstream version '0.17.0+ds'
with Debian dir e8cdf682c37aedf7f1618ff50f6680765468f2f5

New upstream version 0.17.0+ds

Exclude another test that is failing

Do not ignore test results via '|| true'

Update copyright

Adapt patches to new upstream version.  Patches targeting at version 1.10 were deactivated

routine-update: debhelper-compat 13

Update upstream source from tag 'upstream/0.16.0.1+ds'

Update to upstream version '0.16.0.1+ds'
with Debian dir fd4ab3584641ae7025d3b069d5d1b44aa885e82b

New upstream version 0.16.0.1+ds

routine-update: New upstream version

DEP3

Upload to unstable

Remove Python2 also from d/rules

Set upstream metadata fields: Bug-Submit.

Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html

routine-update: Rules-Requires-Root: no

routine-update: Add salsa-ci file

routine-update: Standards-Version: 4.5.0

Remove unneeded debian/gbp.conf

Remove Python2 package

releasing package python-pysam version 0.15.4+ds-2

Dont run unittests for python2 binary, to reduce pytest rdeps

0.15.4+ds-1

Try to keep example_no_seq_in_header_null_bytes.bam from being deleted

python-pysam-tests: Multi-Arch: foreign

Update upstream source from tag 'upstream/0.15.4+ds'

Update to upstream version '0.15.4+ds'
with Debian dir 8d163184d585b58f150119376d9fd11764076f8c

New upstream version 0.15.4+ds

routine-update: New upstream version

routine-update: Ready to upload to unstable

Set upstream metadata fields: Bug-Database, Repository, Repository-Browse.

debian/copyright: use spaces rather than tabs to start continuation lines.

Fixes lintian: tab-in-licence-text
See https://lintian.debian.org/tags/tab-in-licence-text.html for more details.

routine-update: Standards-Version: 4.4.1

make the build reproducible

try to fix seeking in uncompressed files

don't try to ship nonexistent debian/tests/run-nose{3,}-tests

update samtools & bcftools to v1.10

samtools import →  samtools view

Remove hts_utell, no longer in libhts3

sga already removed python2

Update metadata - added ref to bioconda, yamllinting

set HOME for autopkgtests

remove unused autopkgtests

Set upstream metadata fields: Repository.

Use secure URI in Homepage field.

Fixes lintian: homepage-field-uses-insecure-uri
See https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html for more details.

Trim trailing whitespace.

Fixes lintian: file-contains-trailing-whitespace
See https://lintian.debian.org/tags/file-contains-trailing-whitespace.html for more details.

Standards-Version: 4.4.0

debhelper-compat 12

document why we aren't dropping py2 yet

Revert "drop python2"

This reverts commit feea4660e2dfdd2702594e1eee0bae3c53c6d3cb.

drop python2

0.15.3+ds-1

Update upstream source from tag 'upstream/0.15.3+ds'

Update to upstream version '0.15.3+ds'
with Debian dir 307bac42b790b1d11795bf9ce3e9403377717f16

New upstream version 0.15.3+ds

release to unstable

cope with change to Tabix index format

Remove myself from Uploaders

python3:Provides is deprecated

upload to unstable.

remove errant log.txt from the packages.

debian/tests/control.autodep8 → debian/tests/control.

Fix lintian found spelling typos.

Provides: ${python:Provides}

New upstream version

Update upstream source from tag 'upstream/0.15.2+ds'

Update to upstream version '0.15.2+ds'
with Debian dir 528859a225bdaf3bf87eae5371d0cf5153a05354

New upstream version 0.15.2+ds

Team upload - avoiding lintian warning

Giving up for the moment - something deletes this file

Merge branch 'master' of salsa.debian.org:med-team/python-pysam

Restore changes of latest upload

Merge branch 'master' of salsa.debian.org:med-team/python-pysam