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Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't require 32-bit to be time32
Debian armhf/armel (but not i386) are now time64
Author: Graham Inggs, Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/
1068104
Forwarded: no
Gbp-Pq: Name 1068104_time64.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't fail sum test on near-cancelling inputs
Failed in 1.5.3+dfsg-11 after it happened to select an input that
cancelled to ~1e-5 (on i386, so x87 excess precision might be involved)
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name sum_loosen_test_tolerance.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Ignore DeprecationWarnings from Python 3.12
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name ignore_python3p12_deprecations.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Ignore pytables test failures with Python 3.12
The combined xfails are because two separate xfails where only one
has run=False may run, which is a problem when the run=False exists
to avoid a crash - see 1.5.3+dfsg-8 armhf build log
Bug-Debian: https://bugs.debian.org/
1055801
Bug-Ubuntu: https://launchpad.net/ubuntu/+bug/
2043895
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name pytables_python3p12.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Fix test failures when xlsxwriter is not installed
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name 2p1_openpyxl_errors.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Mark tests that need openpyxl
(These do the usual loop through engine/read_ext but
actually use .xlsx every time)
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name allow_no_openpyxl.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Work around xarray wrongly reporting its version
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name xarray_version_workaround.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Ignore exceptions in documentation examples
Some examples download data, and/or depend on
packages Debian doesn't have, so can't run in a Debian build
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name ignore_ipython_exceptions.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't crash on clean
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name unbreak_clean.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't try to run matplotlib-using tests without it
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name allow_no_matplotlib.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
On mips, 1**np.nan and np.nan**0 may be NaN not 1
Done this way not a plain xfail to allow only this difference,
not clearly wrong answers
(The same hardware's "invalid value encountered" warnings,
probably from sNaN/qNaN being reversed, are ignored elsewhere:
d/rules and xfail_tests_nonintel_io.patch)
https://en.wikipedia.org/wiki/NaN#Encoding
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name mips_pow_nan.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Warn that numba may not work on non-x86
Currently known issues are crashes, not wrong answers, but because
the test setup doesn't allow ignoring crashes but failing on
wrong answers, it would be easy to not notice if this changed
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name numba_warn_nonx86.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't require python3-tzdata
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/
1043968
Forwarded: no
Gbp-Pq: Name accept_system_tzdata.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't assume little-endian in test references
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name tests_dont_assume_endian.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't fail plot tests on rounding error
(upstream seem to have _disabled_ the affected tests
...see also test_series)
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/
1029251
Forwarded: no
Gbp-Pq: Name 1029251_ignore_rounding_error.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't require a warning armel numpy doesn't have
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no (this version requires dpkg)
Gbp-Pq: Name armel_ignore_nonwarning.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Fix test failures on 32-bit systems
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: partly https://bugs.debian.org/
1026351
Forwarded: no
Gbp-Pq: Name tests_dont_assume_64bit.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Fix arch-specific upstream xfails
We test on more architectures, so upstream's xfails are not always
correct everywhere. On those known to fail:
arm64 xfail -> all non-x86 xfail
x86 or unconditional strict xfail -> unconditional nonstrict xfail
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug: https://github.com/pandas-dev/pandas/issues/38921, https://github.com/pandas-dev/pandas/issues/38798, https://github.com/pandas-dev/pandas/issues/41740, https://github.com/numpy/numpy/issues/19146
Forwarded: no
Gbp-Pq: Name fix_overly_arch_specific_xfails.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Skip test that fails from outside the source tree
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name skip_test_missing_required_dependency.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Avoid test failures on Hurd
Allow multiprocessing to be unavailable
Accept any errno not just 2 for (intentionally) nonexistent files
(Hurd appears to use 2**30+2)
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name hurd_compat.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Allow some numba errors on 32-bit
Specifying the exception type allows only explicit errors,
not silently wrong answers
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name numba_fail_32bit.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Remove code from Stack Overflow
Stack Overflow content is CC-BY-SA licensed,
which this package is not supposed to be. These snippets may be
too small to be copyrightable, but removing them to be safe.
https://lists.debian.org/debian-legal/2020/04/threads.html#00018
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no - deletes some tests/examples without replacement
Gbp-Pq: Name remove_ccbysa_snippets.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Allow tests to use the data files in the source tree
We don't ship these in the package,
but do want to run the tests that use them
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: https://github.com/pandas-dev/pandas/issues/54907
Gbp-Pq: Name find_test_data.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Link to rather than embed Google calendar
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name privacy.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Use fixed seeds for reproducible pseudorandomness
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name fix_random_seeds.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't try to read a contributor list from the git log
Debian packages are built from tarballs, so there isn't a git log.
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name contributor_list_not_in_tarball.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Use packaged intersphinx indexes
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/876417
Forwarded: not-needed
Gbp-Pq: Name use_system_intersphinx.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Use Debian packaged mathjax
Author: Andreas Tille <tille@debian.org>
Forwarded: not-needed
Gbp-Pq: Name mathjax-path.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Avoid privacy breach by analytics
Author: Yaroslav Halchenko <debian@onerussian.com>,
Andreas Tille <tille@debian.org>,
Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name deb_disable_analytics.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
HDF5 and Stata I/O are broken on some architectures
Fix some issues, warn on use and xfail tests for the remainder
Everything that has a run=False xfail in here should also be in
the run-and-ignore set in debian/tests/numbatests
armhf TestHDF5Store::test*encoding only sometimes crashes
(1.1.3+dfsg-1 passed on build but failed autopkgtest)
HDF5 and Stata are known to fail on big-endian architectures
Stata was previously seen to fail on qemu-ppc64el, but not real ppc64el
Author: Andreas Tille <tille@debian.org>, Graham Inggs <ginggs@debian.org>, Yaroslav Halchenko <debian@onerussian.com>, Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/877419
Bug: partly https://github.com/pandas-dev/pandas/issues/54396
Forwarded: no
Gbp-Pq: Name xfail_tests_nonintel_io.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't try to import from the source directory
Needed as we build the extension modules elsewhere
Author: Yaroslav Halchenko
Forwarded: not-needed
Gbp-Pq: Name deb_doc_donotoverride_PYTHONPATH.patch
Debian Science Team [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Don't try to use git to find the version number
Needed as Debian buildds use tarballs
Author: Yaroslav Halchenko
Forwarded: not-needed
Gbp-Pq: Name deb_nonversioneer_version.patch
Rebecca N. Palmer [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
pandas (2.2.3+dfsg-7) unstable; urgency=medium
* Re-add some but not all build-deps, stop ignoring most tests
and documentation fails (but still ignore #
1094417).
* Temporarily move matplotlib to Build-Depends-Indep.
* Tests: remove no longer needed xfails.
[dgit import unpatched pandas 2.2.3+dfsg-7]
Rebecca N. Palmer [Tue, 28 Jan 2025 22:18:06 +0000 (22:18 +0000)]
Import pandas_2.2.3+dfsg-7.debian.tar.xz
[dgit import tarball pandas 2.2.3+dfsg-7 pandas_2.2.3+dfsg-7.debian.tar.xz]
Rebecca N. Palmer [Sat, 21 Sep 2024 16:21:40 +0000 (17:21 +0100)]
Import pandas_2.2.3+dfsg.orig.tar.xz
[dgit import orig pandas_2.2.3+dfsg.orig.tar.xz]