Étienne Mollier [Sun, 11 Jun 2023 12:43:31 +0000 (14:43 +0200)]
New upstream version 0.21.0+ds
Étienne Mollier [Sat, 19 Nov 2022 10:30:14 +0000 (11:30 +0100)]
New upstream version 0.20.0+ds
Andreas Tille [Fri, 30 Sep 2022 10:00:06 +0000 (12:00 +0200)]
New upstream version 0.19.1+ds
Andreas Tille [Tue, 7 Dec 2021 14:13:52 +0000 (15:13 +0100)]
New upstream version 0.18.0+ds
Andreas Tille [Tue, 7 Dec 2021 08:21:05 +0000 (09:21 +0100)]
New upstream version 0.18.0+ds
Nilesh Patra [Thu, 14 Oct 2021 19:28:59 +0000 (00:58 +0530)]
New upstream version 0.17.0+ds
Andreas Tille [Fri, 2 Oct 2020 06:11:01 +0000 (08:11 +0200)]
New upstream version 0.16.0.1+ds
Michael R. Crusoe [Thu, 23 Jan 2020 12:46:18 +0000 (13:46 +0100)]
New upstream version 0.15.4+ds
Michael R. Crusoe [Tue, 6 Aug 2019 17:37:29 +0000 (19:37 +0200)]
New upstream version 0.15.3+ds
Michael R. Crusoe [Wed, 16 Jan 2019 09:47:32 +0000 (01:47 -0800)]
New upstream version 0.15.2+ds
Steffen Moeller [Fri, 14 Sep 2018 08:43:38 +0000 (10:43 +0200)]
New upstream version 0.15.1+ds
Steffen Moeller [Sat, 28 Jul 2018 22:50:40 +0000 (00:50 +0200)]
New upstream version 0.15.0.1+ds
Afif Elghraoui [Sun, 22 Apr 2018 22:30:02 +0000 (18:30 -0400)]
New upstream version 0.14.1+ds
Andreas Tille [Sat, 17 Feb 2018 13:42:30 +0000 (14:42 +0100)]
New upstream version 0.14+ds
Andreas Tille [Wed, 13 Dec 2017 11:59:12 +0000 (12:59 +0100)]
New upstream version 0.13.0+ds
Afif Elghraoui [Sun, 10 Sep 2017 04:15:40 +0000 (00:15 -0400)]
New upstream version 0.12.0.1+ds
Andreas Tille [Tue, 29 Aug 2017 20:51:34 +0000 (22:51 +0200)]
New upstream version 0.12.0+ds
Afif Elghraoui [Sun, 2 Jul 2017 07:50:19 +0000 (03:50 -0400)]
Imported Upstream version 0.11.2.2+ds
Afif Elghraoui [Tue, 24 Jan 2017 03:09:05 +0000 (19:09 -0800)]
Imported Upstream version 0.10.0+ds
Afif Elghraoui [Sat, 23 Jul 2016 22:39:14 +0000 (15:39 -0700)]
Imported Upstream version 0.9.1.4+ds
Afif Elghraoui [Sun, 19 Jun 2016 21:17:37 +0000 (14:17 -0700)]
Imported Upstream version 0.9.1+ds
Afif Elghraoui [Sat, 5 Mar 2016 21:41:37 +0000 (13:41 -0800)]
Imported Upstream version 0.9.0+ds
Afif Elghraoui [Thu, 12 Nov 2015 02:45:10 +0000 (18:45 -0800)]
Imported Upstream version 0.8.4+ds
Afif Elghraoui [Thu, 25 Jun 2015 02:27:30 +0000 (19:27 -0700)]
Imported Upstream version 0.8.3+ds1
Afif Elghraoui [Mon, 8 Jun 2015 05:30:02 +0000 (22:30 -0700)]
Imported Upstream version 0.8.3
Jorge Soares [Fri, 28 Nov 2014 09:29:20 +0000 (09:29 +0000)]
Imported Upstream version 0.8.1
Jorge Soares [Fri, 28 Nov 2014 09:27:49 +0000 (09:27 +0000)]
Imported Upstream version 0.8.1
Jorge Soares [Thu, 27 Nov 2014 16:40:19 +0000 (16:40 +0000)]
Imported Upstream version 0.8.1
Jorge Soares [Wed, 26 Nov 2014 14:54:20 +0000 (14:54 +0000)]
Imported Upstream version 0.8.1
Jorge Soares [Wed, 26 Nov 2014 11:36:48 +0000 (11:36 +0000)]
Adding lib source code. Probably won't be needed
Jorge Soares [Wed, 26 Nov 2014 11:34:32 +0000 (11:34 +0000)]
Adding individual files form new upstream
Jorge Soares [Wed, 26 Nov 2014 11:32:16 +0000 (11:32 +0000)]
Deleting files that are no longer used by upstream
Jorge Soares [Wed, 26 Nov 2014 11:27:34 +0000 (11:27 +0000)]
Copied the new source to the package
Jorge Soares [Wed, 26 Nov 2014 11:19:37 +0000 (11:19 +0000)]
lost debian folder when importing pristine-tar, so reuploading from previous commit
Jorge Soares [Wed, 26 Nov 2014 11:06:35 +0000 (11:06 +0000)]
Merge tag 'upstream/0.8.1'
Upstream version 0.8.1
Jorge Soares [Wed, 26 Nov 2014 11:06:32 +0000 (11:06 +0000)]
Imported Upstream version 0.8.1
Jorge Soares [Wed, 26 Nov 2014 10:56:08 +0000 (10:56 +0000)]
starting to implement python 3 support
Andreas Tille [Fri, 26 Sep 2014 07:41:32 +0000 (09:41 +0200)]
In case we try to build with Git checkout which does not contain Cython generated files check for these files before trying to move them
Andreas Tille [Thu, 25 Sep 2014 13:12:04 +0000 (15:12 +0200)]
Try to explicitly set HTSLIB_LIBRARY_DIR as recommended in https://github.com/pysam-developers/pysam/issues/34 but failed anyway
Andreas Tille [Thu, 25 Sep 2014 11:54:01 +0000 (13:54 +0200)]
Reenable check to ask for help on Debian Python list
Andreas Tille [Wed, 20 Aug 2014 10:03:17 +0000 (12:03 +0200)]
Try linking against htslib; ATTENTION: Testsuite fails with
ImportError: /usr/lib/python2.7/dist-packages/pysam/csamfile.x86_64-linux-gnu.so: undefined symbol: sam_itr_queryi
This needs to be tracked down
Andreas Tille [Tue, 19 Aug 2014 19:27:06 +0000 (21:27 +0200)]
New upstream version
Andreas Tille [Tue, 19 Aug 2014 19:26:00 +0000 (21:26 +0200)]
Merge tag 'upstream/0.8.0'
Upstream version 0.8.0
Andreas Tille [Tue, 19 Aug 2014 19:25:58 +0000 (21:25 +0200)]
Imported Upstream version 0.8.0
Charles Plessy [Sun, 20 Apr 2014 02:24:08 +0000 (11:24 +0900)]
Requires Python 2.7 or higher.
Charles Plessy [Sat, 19 Apr 2014 05:37:22 +0000 (14:37 +0900)]
python-pysam (0.7.7-1) unstable; urgency=medium
* New upstream releases.
* Upstream source code moved to GitHub.
* Watch the Python Package Index since there are no relevant tags on GitHub.
* Added a git-buildpackage configuration file to mark its usage.
* Build-depend samtools (>= 0.1.19); this is needed for the regression tests
in Wheezy.
* debian/patches/offline-tests.patch: correction from a later release.
-- Charles Plessy <plessy@debian.org> Sat, 19 Apr 2014 14:17:42 +0900
Charles Plessy [Sat, 19 Apr 2014 05:20:13 +0000 (14:20 +0900)]
Build-depend samtools (>= 0.1.19).
This is needed for the regression tests in Wheezy, where I would like to make
a backport.
Charles Plessy [Sat, 19 Apr 2014 05:14:53 +0000 (14:14 +0900)]
Correct an error in the upstream test suite.
This is already corrected upstrem.
Charles Plessy [Sat, 19 Apr 2014 03:00:29 +0000 (12:00 +0900)]
Refresh patches.
Charles Plessy [Sat, 19 Apr 2014 02:54:31 +0000 (11:54 +0900)]
Add back files that were accidentally deleted when merging upstream release.
Charles Plessy [Sat, 19 Apr 2014 02:48:18 +0000 (11:48 +0900)]
New upstream release; no new copyright nor license notice.
Charles Plessy [Sat, 19 Apr 2014 02:42:03 +0000 (11:42 +0900)]
Merge tag 'upstream/0.7.7'
Upstream version 0.7.7
# gpg: Signature faite le sam. 19 avril 2014 11:42:03 JST avec la clef RSA d'identifiant
2295D502
# gpg: Bonne signature de « Charles Plessy <plessy@debian.org> »
Charles Plessy [Sat, 19 Apr 2014 02:42:00 +0000 (11:42 +0900)]
Imported Upstream version 0.7.7
Charles Plessy [Sat, 19 Apr 2014 02:41:42 +0000 (11:41 +0900)]
Merge tag 'upstream/0.7.6'
Upstream version 0.7.6
Conflicts:
debian/changelog
debian/control
debian/copyright
debian/python-pysam-tests.README.Debian
debian/python-pysam-tests.install
debian/rules
debian/tests/control
debian/tests/run-unit-test
debian/watch
Charles Plessy [Sat, 19 Apr 2014 02:39:04 +0000 (11:39 +0900)]
Imported Upstream version 0.7.6
Charles Plessy [Sat, 19 Apr 2014 02:37:59 +0000 (11:37 +0900)]
Add a git-buildpackage configuration file to mark its usage.
Charles Plessy [Sat, 19 Apr 2014 02:35:50 +0000 (11:35 +0900)]
Watch the Python Package Index since there are no relevant tags on GitHub.
Charles Plessy [Sat, 19 Apr 2014 02:31:46 +0000 (11:31 +0900)]
Moved to GitHub.
Andreas Tille [Wed, 19 Mar 2014 12:31:11 +0000 (13:31 +0100)]
Add make to autopkgtest dependencies
Andreas Tille [Wed, 19 Mar 2014 12:21:39 +0000 (13:21 +0100)]
Remove duplicated (useless) cd
Andreas Tille [Tue, 11 Mar 2014 19:31:18 +0000 (20:31 +0100)]
Upload to unstable
Andreas Tille [Tue, 11 Mar 2014 19:30:01 +0000 (20:30 +0100)]
Fix autopkgtest
Andreas Tille [Sun, 2 Mar 2014 08:18:00 +0000 (09:18 +0100)]
Do not provide a code copy of the test script in README.Debian but rather provide the script for execution; create temp dir using mktemp; upload to unstable
Andreas Tille [Sun, 2 Mar 2014 00:22:12 +0000 (01:22 +0100)]
Tests should not be world writable
Andreas Tille [Fri, 21 Feb 2014 23:54:18 +0000 (00:54 +0100)]
Upload to unstable
Andreas Tille [Fri, 21 Feb 2014 22:13:17 +0000 (23:13 +0100)]
Apply patch by Piotr Ożarowski <piotr@debian.org> to properly run test on all architectures
Andreas Tille [Tue, 18 Feb 2014 19:09:14 +0000 (20:09 +0100)]
Enhance copyright according to ftpmaster
Andreas Tille [Tue, 11 Feb 2014 18:25:21 +0000 (19:25 +0100)]
Test needs samtools
Andreas Tille [Tue, 11 Feb 2014 18:24:20 +0000 (19:24 +0100)]
Initial release to Debian
Andreas Tille [Tue, 11 Feb 2014 17:46:38 +0000 (18:46 +0100)]
Imported Upstream version 0.7.5
Andreas Tille [Tue, 11 Feb 2014 17:45:51 +0000 (18:45 +0100)]
Cleanup changelog from never released versions; move git repository and source package from pysam to python-pysam
Andreas Tille [Tue, 11 Feb 2014 16:47:14 +0000 (17:47 +0100)]
Make sure we can purge the package properly
Andreas Tille [Tue, 11 Feb 2014 16:27:25 +0000 (17:27 +0100)]
Add autopkgtest
Andreas Tille [Tue, 11 Feb 2014 16:26:30 +0000 (17:26 +0100)]
Do not leave any remainings from testing
Andreas Tille [Tue, 11 Feb 2014 16:20:30 +0000 (17:20 +0100)]
Hopefully finalising debian/copyright
Andreas Tille [Tue, 11 Feb 2014 15:45:06 +0000 (16:45 +0100)]
Duplicated code was verified. It seems to be quite hard to link against Debian packaged samtools - so work down the draft in debian/copyright and upload
Andreas Tille [Tue, 11 Feb 2014 15:08:30 +0000 (16:08 +0100)]
Additional hint to Python Library Style Guide
Andreas Tille [Tue, 11 Feb 2014 14:46:54 +0000 (15:46 +0100)]
Spelling
Andreas Tille [Tue, 11 Feb 2014 13:50:18 +0000 (14:50 +0100)]
Tests are now working in /var/lib/pysam
Andreas Tille [Tue, 11 Feb 2014 12:21:26 +0000 (13:21 +0100)]
Only install needed files
Andreas Tille [Tue, 11 Feb 2014 12:13:40 +0000 (13:13 +0100)]
Enable running tests (needs more work)
Andreas Tille [Tue, 11 Feb 2014 10:36:54 +0000 (11:36 +0100)]
Enable proper cleaning by preserving original Cython created files.
Andreas Tille [Tue, 11 Feb 2014 10:19:38 +0000 (11:19 +0100)]
Next try to install python-pysam
Andreas Tille [Mon, 10 Feb 2014 18:10:31 +0000 (19:10 +0100)]
This does not work ...
Andreas Tille [Mon, 10 Feb 2014 18:09:46 +0000 (19:09 +0100)]
Add package carrying test data
Andreas Tille [Mon, 10 Feb 2014 13:11:09 +0000 (14:11 +0100)]
Test suite needs installed samtools.
Andreas Tille [Mon, 10 Feb 2014 10:52:59 +0000 (11:52 +0100)]
Enable proper cleanup after running tests
Andreas Tille [Mon, 10 Feb 2014 10:35:48 +0000 (11:35 +0100)]
Add DEP3 comment
Andreas Tille [Mon, 10 Feb 2014 10:33:10 +0000 (11:33 +0100)]
Ensure that test suite is really running and we are not trying to fetch files from upstream (== removing four tests from test suite in a patch)
Andreas Tille [Fri, 7 Feb 2014 18:44:57 +0000 (19:44 +0100)]
Fix format of debian/copyright
Andreas Tille [Fri, 7 Feb 2014 18:43:20 +0000 (19:43 +0100)]
According to lintian the section should be python
Andreas Tille [Fri, 7 Feb 2014 17:30:54 +0000 (18:30 +0100)]
Prevent uploading distribute_setup
Andreas Tille [Fri, 7 Feb 2014 16:10:42 +0000 (17:10 +0100)]
Add X-Python-Version: >= 2.6
Andreas Tille [Fri, 7 Feb 2014 16:09:03 +0000 (17:09 +0100)]
cme fix dpkg-control; I need this package for just injected fitgpc
Charles Plessy [Fri, 9 Aug 2013 09:39:40 +0000 (18:39 +0900)]
Corrected version number.
Charles Plessy [Fri, 9 Aug 2013 09:37:20 +0000 (18:37 +0900)]
Debhelper 9.
Charles Plessy [Fri, 9 Aug 2013 09:36:51 +0000 (18:36 +0900)]
Normalised with config-model-edit.
Charles Plessy [Fri, 9 Aug 2013 09:34:41 +0000 (18:34 +0900)]
Merge tag 'upstream/0.7.5'
Upstream version 0.7.5
# gpg: Signature made Fri 09 Aug 2013 18:34:40 JST using RSA key ID
2295D502
# gpg: Good signature from "Charles Plessy <plessy@debian.org>"
Charles Plessy [Fri, 9 Aug 2013 09:34:40 +0000 (18:34 +0900)]
Imported Upstream version 0.7.5
Charles Plessy [Fri, 9 Aug 2013 09:34:36 +0000 (18:34 +0900)]
Merge tag 'upstream/0.7.4'
Upstream version 0.7.4
# gpg: Signature made Fri 09 Aug 2013 18:34:36 JST using RSA key ID
2295D502
# gpg: Good signature from "Charles Plessy <plessy@debian.org>"
projects / python-pysam.git / log