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Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Allow tests to use the data files in the source tree
We don't ship these in the package,
but do want to run the tests that use them
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name find_test_data.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Use https for links where possible
Also fix some (semi-)broken links found while checking https availability.
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: accepted for 1.1 https://github.com/pandas-dev/pandas/pull/31145
Gbp-Pq: Name link_security.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Link to rather than embed Google calendar
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name privacy.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Fix typos
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Origin: lintian
Forwarded: not-needed (already fixed)
Gbp-Pq: Name spelling.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Don't require the pandas theme
(TODO - package it - here as a multi-upstream-tarball package?)
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name sphinx_no_pandas_theme.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Xfail a test that doesn't work in the C locale
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name xfail_c_locale.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Don't fail tests on harmless changes to dependencies
Don't assert that matplotlib rejects shorthand hex colors,
as from 3.2 it accepts them:
https://matplotlib.org/users/prev_whats_new/whats_new_3.2.0.html#digit-and-4-digit-hex-colors
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: accepted https://github.com/pandas-dev/pandas/pull/33262
Gbp-Pq: Name matplotlib32_compat.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Use fixed seeds for reproducible pseudorandomness
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name fix_random_seeds.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Fix or skip tests that assume the wrong endianness
This is a bug in the tests not pandas itself -
the expected values explicitly specify little-endian
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name tests_dont_assume_endian.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Don't try to read a contributor list from the git log
Debian packages are built from tarballs, so there isn't a git log.
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name contributor_list_not_in_tarball.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Skip feather tests if pyarrow not available
pandas now needs pyarrow.feather (not in Debian),
not python3-feather-format, for read_feather/to_feather
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: accepted for 1.1 https://github.com/pandas-dev/pandas/pull/31144
Gbp-Pq: Name pyarrow_feather.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Use Python 3 shebangs and subprocess calls
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: accepted for 1.1 https://github.com/pandas-dev/pandas/pull/31147
Gbp-Pq: Name fix_shebangs.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Use packaged intersphinx indexes
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/876417
Forwarded: not-needed
Gbp-Pq: Name use_system_intersphinx.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Don't test datetime in locales with no encoding
Some datetime tests run the test in every available locale.
If this set includes locales without an encoding (currently dsb_DE
and sah_RU), it fails due to Python bug
https://bugs.python.org/issue20088
Failure log
https://tests.reproducible-builds.org/debian/rbuild/buster/amd64/pandas_0.23.3+dfsg-3.rbuild.log.gz
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug: https://github.com/pandas-dev/pandas/issues/20957
Forwarded: no
Gbp-Pq: Name skip_noencoding_locales.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Xfail NaN <-> NaT tests on non-x86 and warn on cast
pd.Series([np.nan]).astype('datetime64[ns]')[0] = pd.NaT on x86
but 1970-01-01 on arm* because float NaN -> int is undefined:
https://github.com/numpy/numpy/issues/8325
https://github.com/pandas-dev/pandas/issues/17792
https://github.com/pandas-dev/pandas/issues/26964
On s390x it's the maximum _positive_ value (2**63-1 ns = year 2262)
Author: Andreas Tille <tille@debian.org>, Graham Inggs <ginggs@debian.org>, Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/877754
Forwarded: no
Gbp-Pq: Name xfail_tests_nonintel_nannat.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Use Debian packaged mathjax
Author: Andreas Tille <tille@debian.org>
Forwarded: not-needed
Gbp-Pq: Name mathjax-path.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Don't fail tests because we don't ship test data
This applies to users running them; our build/autopkgtest re-enable
this and use the data from the source tree
Author: Yaroslav Halchenko
Forwarded: no
Gbp-Pq: Name deb_no_strict_data.patch
Yaroslav Halchenko [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Avoid privacy breach by Google Analytics
Last-Update: Mon, 23 Oct 2017 08:55:28 +0200
Forwarded: not-needed
Gbp-Pq: Name deb_disable_googleanalytics.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
HDF5 and Stata I/O are broken on some architectures
Fix some issues, warn on use and xfail tests for the remainder
HDF5 and Stata are known to fail on big-endian architectures
Stata also fails on qemu-ppc64el, but not real ppc64el
In 0.25.3 HDF5 _crashes_ on armhf, so skip
(pytest-forked allows continuing past a crash,
but still seems to fail on xfailed crashes)
Author: Andreas Tille <tille@debian.org>, Graham Inggs <ginggs@debian.org>, Yaroslav Halchenko <debian@onerussian.com>, Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/877419
Forwarded: no
Gbp-Pq: Name xfail_tests_nonintel_io.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Don't try to import from the source directory
Needed as we build the extension modules elsewhere
Author: Yaroslav Halchenko
Forwarded: not-needed
Gbp-Pq: Name deb_doc_donotoverride_PYTHONPATH.patch
Debian Science Team [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Don't try to use git to find the version number
Needed as Debian buildds use tarballs
Author: Yaroslav Halchenko
Forwarded: not-needed
Gbp-Pq: Name deb_nonversioneer_version.patch
Rebecca N. Palmer [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
pandas (1.0.5+dfsg-3) unstable; urgency=medium
* Remove pytest-asyncio test-depends.
* Remove numba test-depends on non-x86: at least s390x crashes.
[dgit import unpatched pandas 1.0.5+dfsg-3]
Rebecca N. Palmer [Wed, 26 Aug 2020 21:34:50 +0000 (22:34 +0100)]
Import pandas_1.0.5+dfsg-3.debian.tar.xz
[dgit import tarball pandas 1.0.5+dfsg-3 pandas_1.0.5+dfsg-3.debian.tar.xz]
Rebecca N. Palmer [Tue, 25 Aug 2020 19:07:50 +0000 (20:07 +0100)]
Import pandas_1.0.5+dfsg.orig.tar.xz
[dgit import orig pandas_1.0.5+dfsg.orig.tar.xz]