From: Antonio Valentino Date: Tue, 20 Dec 2022 21:15:54 +0000 (+0000) Subject: pytables (3.7.0-5) unstable; urgency=medium X-Git-Tag: archive/raspbian/3.10.2-1+rpi1~1^2^2~6 X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=e95988f1622d8ccf35c9f81bc1675cda9a5204f6;p=pytables.git pytables (3.7.0-5) unstable; urgency=medium * debian/patches: - fix compatibility with numpy >= 1.22 (Closes: #1026604). See also https://github.com/PyTables/PyTables/issues/934. [dgit import unpatched pytables 3.7.0-5] --- e95988f1622d8ccf35c9f81bc1675cda9a5204f6 diff --cc debian/.gitlab-ci.yml index 0000000,0000000..892f3cd new file mode 100644 --- /dev/null +++ b/debian/.gitlab-ci.yml @@@ -1,0 -1,0 +1,3 @@@ ++include: ++ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml ++ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml diff --cc debian/README.Debian index 0000000,0000000..d5fdafd new file mode 100644 --- /dev/null +++ b/debian/README.Debian @@@ -1,0 -1,0 +1,8 @@@ ++PyTables for Debian ++------------------- ++ ++- The user's manual and the examples are in python-tables-doc ++ package. For the new additions on this release, see changelog.gz. ++ ++ -- Francesc Altet , Fri, 15 Jul 2005 18:26:51 +0200 ++ diff --cc debian/README.source index 0000000,0000000..bccd59e new file mode 100644 --- /dev/null +++ b/debian/README.source @@@ -1,0 -1,0 +1,42 @@@ ++README.source ++------------- ++ ++The PyTables project provides two kinds of source packages: ++ ++* the "official" source tarball also includes the pre-built HTML and PDF ++ documentation and is the available at ++ ++ http://sourceforge.net/projects/pytables/files/pytables/ ++ ++ or ++ ++ http://pypi.python.org/pypi/tables ++ ++* the "pure source" distribution, instead, only includes sources for the ++ python package and extensions and for documentation (sphinx [1] based ++ documentation in reStructuredText format). ++ The "pure source" distribution is only available on GitHub and it is ++ generated from the source code repository tags: ++ ++ https://github.com/PyTables/PyTables/releases ++ ++The debian package for PyTables uses the "pure source" distribution in order ++to make it easier to manage stuffs related to sphinx [1] documentation ++management. ++ ++The PyTables source tree includes an internal copy of c-blosc [2] and ++(starting from version 3.1) a copy of the zlib [3], lz4 [4] and snappy [5] ++compression libraries. ++Apart for c-blosc, for which no debian package is available at the moment, ++the debian package for PyTables does not use the internal copy of the ++compressors. It links the system version of that libraries. ++ ++ ++[1] http://sphinx-doc.org ++[2] http://blosc.org ++[3] http://www.zlib.net ++[4] http://code.google.com/p/lz4 ++[5] http://code.google.com/p/snappy ++ ++ -- Antonio Valentino Wed, 05 Mar 2014 23:49:28 +0100 ++ diff --cc debian/changelog index 0000000,0000000..5171521 new file mode 100644 --- /dev/null +++ b/debian/changelog @@@ -1,0 -1,0 +1,860 @@@ ++pytables (3.7.0-5) unstable; urgency=medium ++ ++ * debian/patches: ++ - fix compatibility with numpy >= 1.22 (Closes: #1026604). ++ See also https://github.com/PyTables/PyTables/issues/934. ++ ++ -- Antonio Valentino Tue, 20 Dec 2022 21:15:54 +0000 ++ ++pytables (3.7.0-4) unstable; urgency=medium ++ ++ * debian/copyright: ++ - Fix formatting ++ - Update copyright date ++ * debian/tests: ++ - autopkgtests all supported Python versions. ++ * Fix lintian overrides. ++ * debian/control: ++ - add build-dependency on pybuild-plugin-pyproject. ++ * Standards version bumped to 4.6.1 (no changes). ++ * Update debian/*.install files. ++ ++ -- Antonio Valentino Sat, 15 Oct 2022 10:44:26 +0000 ++ ++pytables (3.7.0-3) unstable; urgency=medium ++ ++ * Fix documentation build (Closes: #1009459). ++ ++ -- Antonio Valentino Thu, 14 Apr 2022 06:39:28 +0000 ++ ++pytables (3.7.0-2) unstable; urgency=medium ++ ++ * debian/python3-tables.links ++ - add missing link to data file. ++ ++ -- Antonio Valentino Thu, 30 Dec 2021 11:14:17 +0000 ++ ++pytables (3.7.0-1) unstable; urgency=medium ++ ++ * New upstream release. ++ * Cleanup of d/python3-tables.lintian-overrides. ++ * Update d/copyright. ++ * debian/patches: ++ - drop 0002-Never-use-the-msse2-flag-explicitly.patch, ++ 0006-Fix-pttree.patch, 0007-Fix-syntax-warnings.patch, ++ 0008-Fix-the-interpreter-name-in-examples.patch, ++ 0009-Fix-unittests-on-vlarrays.patch, ++ 0010-Use-lowercase-float-int-as-numpy-dtype.patch, ++ 0011-doctest-adjust-__init__-TypeError-formatting.patch, ++ applied upstream ++ - refresh and renumber remaining patches. ++ * debian/control: ++ - update dependencies (add python3-packaging and remove ++ python3-six). ++ * debian/rules: ++ - disable SSE2 via environment variable ++ - clean build rule ++ - improve the test rule. ++ ++ -- Antonio Valentino Wed, 29 Dec 2021 22:51:43 +0000 ++ ++pytables (3.6.1-6) unstable; urgency=medium ++ ++ [ Stefano Rivera ] ++ * Handle Python 3.10 in the Sphinx build, missed in 5.1. ++ ++ [ Antonio Valentino ] ++ * Update d/python3-tables.lintian-overrides. ++ * Update d/copyright. ++ ++ -- Antonio Valentino Fri, 26 Nov 2021 08:12:25 +0000 ++ ++pytables (3.6.1-5.1) unstable; urgency=medium ++ ++ * Non-maintainer upload. ++ * Patch: Fix FTBFS with numpy >= 1.20 (Closes: #999538) ++ * Patch: Fix FTBFS with Python 3.10. ++ * Install Python 3.10 C Extensions (2-digit minor version). ++ ++ -- Stefano Rivera Sat, 20 Nov 2021 23:32:58 -0400 ++ ++pytables (3.6.1-5) unstable; urgency=medium ++ ++ * debian/control: ++ - explicitly depende on tex-gyre (fix build on mips*). ++ ++ -- Antonio Valentino Tue, 28 Sep 2021 06:05:13 +0000 ++ ++pytables (3.6.1-4) unstable; urgency=medium ++ ++ * Standards version bumped to 4.6.0 (no changes). ++ * debian/control: ++ - drop unnecessary greater-than versioned dependency form ++ python-tables-doc ++ - drop unnecessary Breaks/Replaces fileds for version 3.4.2-1 ++ (oldstable has 3.4.4-2) ++ * debian/patches: ++ - new 0009-Fix-unittests-on-vlarrays.patch, see ++ 0009-Fix-unittests-on-vlarrays.patch. ++ * Drop python3-tables-dbg (Closes: #994343). ++ ++ -- Antonio Valentino Sun, 26 Sep 2021 08:08:53 +0000 ++ ++pytables (3.6.1-3) unstable; urgency=medium ++ ++ * Add lintian-overrides for maintainer-manual-page. ++ Manual pages already forwarded upstream. ++ * Add lintian-overrides for breakout-link. ++ * Update mismatching lintian overrides. ++ * Add Forwarded field to all patches. ++ * Standards-Version bumped to 4.5.1, no change needed. ++ * Update watch file format version to 4. ++ * debian/patches: ++ - new 0008-Fix-the-interpreter-name-in-examples.patch ++ * Add .gitlab-ci.yml. ++ ++ -- Antonio Valentino Tue, 08 Dec 2020 09:02:17 +0000 ++ ++pytables (3.6.1-2) unstable; urgency=medium ++ ++ * Add links to new data (fix CI tests). ++ ++ -- Antonio Valentino Sat, 04 Jan 2020 08:59:06 +0000 ++ ++pytables (3.6.1-1) unstable; urgency=medium ++ ++ * New upstream release. ++ * Drop manpage for nc2h5. the tool has been already removed some ++ time ago. ++ * debian/patches: ++ - drop 0005-Drop-mock-for-requirements.txt.patch and ++ 0007-Compat-with-Python-3.8.patch: applied upstream ++ - refresh and renumber remaining patches ++ - new 0006-Fix-pttree.patch (Closes: #941954) ++ - new 0007-Fix-syntax-warnings.patch (Closes: #945282) ++ ++ -- Antonio Valentino Sat, 21 Dec 2019 17:29:37 +0000 ++ ++pytables (3.5.2-5) unstable; urgency=medium ++ ++ * Team upload. ++ * Drop python2 support; Closes: #937554 ++ ++ -- Sandro Tosi Tue, 17 Dec 2019 16:17:38 -0500 ++ ++pytables (3.5.2-4) unstable; urgency=medium ++ ++ * Update standards version to 4.4.1, no changes needed. ++ * Remove obsolete fields Name from debian/upstream/metadata. ++ * Fix day-of-week for changelog entries 2.1.2-3, 0.7.2-2. ++ * debian/patches: ++ - new 0007-Compat-with-Python-3.8.patch ++ * debian/control: ++ - explicitly set Rules-Requires-Root: no ++ * Replace deprecated ADTTMP with AUTOPKGTEST_TMP in debian/tests ++ scripts. ++ ++ -- Antonio Valentino Thu, 21 Nov 2019 20:06:22 +0000 ++ ++pytables (3.5.2-3) unstable; urgency=medium ++ ++ * debian/rules: ++ - improve clean target ++ - ensure reproducible builds ++ - fix sphinx build command ++ ++ -- Antonio Valentino Fri, 16 Aug 2019 17:53:28 +0000 ++ ++pytables (3.5.2-2) unstable; urgency=medium ++ ++ * debian/control: ++ - replace the deprecated build dependency texlive-generic-extra, ++ with texlive-plain-generic (Closes: #933279) ++ - sort dependency lists ++ * debian/patches: ++ - new 0006-Skip-index-backcompat-tests-on-bingendian.patch ++ * drop debian/compat file, and depend on debelper-compat. ++ ++ -- Antonio Valentino Sat, 03 Aug 2019 16:24:07 +0000 ++ ++pytables (3.5.2-1) unstable; urgency=medium ++ ++ * New upstream release. ++ * debian/control: ++ - standard version bumped to 4.4.0, no change ++ - remove unnecessary greater-than versioned dependency for liblz4-dev ++ * debian/rules: ++ - drop -pie from hardening flags ++ * Use secure URI in Homepage field. ++ * Clean links to duplicated files in debian/python-tables-doc.links ++ * debian/patches: ++ - drop 0005-Comaptibility-with-numpy-1.16.patch and ++ debian/patches/0006-Fix-LZO2-detection.patch: applied upstream ++ - new 0005-Drop-mock-for-requirements.txt.patch ++ - refresh remaining patches ++ ++ -- Antonio Valentino Sun, 14 Jul 2019 09:32:15 +0000 ++ ++pytables (3.4.4-2) unstable; urgency=medium ++ ++ * Team upload. ++ * Standard version bumped to 4.3.0, no change. ++ * debian/patches: ++ - new 0005-Comaptibility-with-numpy-1.16.patch: ++ fixes an issue with not writeable buffers. ++ Closes: #917666. ++ - new 0006-Fix-LZO2-detection.patch ++ * debian/control: ++ - re-order dependencies ++ * Add gbp.conf file. ++ * Switch to pybuild. ++ * Set compat to 12. ++ ++ -- Antonio Valentino Wed, 02 Jan 2019 09:48:48 +0000 ++ ++pytables (3.4.4-1) unstable; urgency=medium ++ ++ * New upstream release. ++ * debian/patches ++ - drop 0005-Compatibility-with-NumPy-1.14.3.patch. ++ Applied upstream. ++ - refresh remaining pathces. ++ * debian/changelog ++ - strip trailing spaces ++ - update copyright dates ++ ++ -- Antonio Valentino Sat, 16 Jun 2018 10:53:16 +0000 ++ ++pytables (3.4.3-2) unstable; urgency=medium ++ ++ * debian/patches ++ - new 0005-Compatibility-with-NumPy-1.14.3.patch (Closes: #898577) ++ * debian control ++ - drop ancient X-Python-Version fields ++ ++ -- Antonio Valentino Mon, 14 May 2018 22:21:42 +0000 ++ ++pytables (3.4.3-1) unstable; urgency=medium ++ ++ * New upstream release. ++ * Standard version bump to v4.1.4 (no change) ++ * Add upstream metadata. ++ * Updated debian/copyright file. ++ * debian/control ++ - update Vcs-* fields ++ * debian/patches ++ - drop 0004-unicode-charecter-for-latexpdf.patch, applied upstream ++ - drop 0005-usepackage-threeparttable.patch, applied upstream ++ - drop debian/patches/0006-Use-mock-form-stdlib.patch, applied upstream ++ - new 0004-remove-gtags.patch to avoid privacy-breach-generic ++ - refresh all remaining patches ++ ++ -- Antonio Valentino Sun, 22 Apr 2018 16:48:11 +0000 ++ ++pytables (3.4.2-4) unstable; urgency=medium ++ ++ * Switch to pybuild ++ * debian/control ++ - python-tables-doc (>= 3.4.2-3) tries to overwrite files in older ++ python-tables. ++ Set the proper package dependency relations (Closes: #891023). ++ ++ -- Antonio Valentino Sun, 25 Feb 2018 12:07:35 +0000 ++ ++pytables (3.4.2-3) unstable; urgency=medium ++ ++ * Standard version bumped to v4.1.3 (no changes) ++ * Set compat to 11 ++ * Update lintian overrides ++ * Fix 0005-usepackage-threeparttable.patch (Closes: #888177) ++ * debian/control ++ - suggest python(3)-netcdf4 instead of python-netcdf ++ - drop build dependency from python3-mock (Closes: #876841) ++ - update package description (Closes: #664441) ++ * Do not install duplicate files ++ * python-tables-doc depends on libjs-mathjax (Closes: #877277) ++ * debian/patches ++ - refresh all patches ++ - new 0006-Use-mock-form-stdlib.patch ++ ++ -- Antonio Valentino Fri, 02 Feb 2018 07:39:49 +0000 ++ ++pytables (3.4.2-2) unstable; urgency=medium ++ ++ * Standard version bumped to v4.1.1 (extra --> optional) ++ * debian/control ++ - declare break/replace rules: python3-tables (>= 3.4.2-1) install ++ scripts that was previously installed by python-tables ++ (Closes: #881741) ++ - remove break/replace rules for pytables << 3.0.0-3: ++ no longer necessary ++ * debian/tests/control ++ - reformat ++ - re-enable tests on python3-dbg ++ * add debian/source.lintian-overrides ++ ++ -- Antonio Valentino Sat, 18 Nov 2017 11:58:23 +0000 ++ ++pytables (3.4.2-1) unstable; urgency=medium ++ ++ * New upstream release (Closes: #874362) ++ * Standard version bumped to v4.1.0 (no change) ++ * Ensure that autopkgtest scripts return the correct exit code ++ (Closes: #864395) ++ * debian/patches: ++ - drop 0003-Do-not-fetch-icons-for-external-web-sites.patch, ++ 0004-fix-compatibility-with-HDF5-1.10.patch, ++ 0005-Ignore-cpuinfo-on-unsupported-archs.patch and ++ 0006-allow-for-long-type-in-nextafter: applied upstream ++ - refresh remainimg patches ++ - new 0003-use-local-mathjax.patch ++ - new 0004-unicode-charecter-for-latexpdf.patch ++ - new 0005-usepackage-threeparttable.patch (compatibility ++ with sphinx >= 1.6) ++ * Updated copyright file ++ * debian/control ++ - add build dependency from python(3)-sphinx-rtd-theme, ++ python(3)-ipython, python(3)-numpydoc and python-mock ++ - add dependency from libjs-mathjax and python(3)-mock ++ - depend on python3-sphinx instead of pyhton-sphinx ++ - build-depend on latexmk that is required bt sphinx >= 1.6 ++ (Closes: #872314) ++ - remove un-necessary "Testsuite: autopkgtest" ++ * Install scripts (and related manpages) for the python3 version ++ of the package ++ * debian/rules ++ - no longer use dpkg-parsechangelog to determine the current ++ package timestamp ++ - avoid duplicate files in the doc ++ - improve clean target ++ * debian/source/lintian-overrides ++ - new lintian overrides for library-package-name-for-application ++ and application-in-library-section ++ ++ -- Antonio Valentino Sat, 23 Sep 2017 11:56:40 +0000 ++ ++pytables (3.3.0-5) unstable; urgency=medium ++ ++ * debian/rules ++ - typo in BUILD_DATE ++ * debian/patches ++ - removed 0006-Disable-tests-on-bitshuffle.patch ++ It is no longer necessary after the fix of #844047 in ++ c-blosc 1.11.1+ds1-3 ++ - new 0006-allow-for-long-type-in-nextafter.patch. ++ Imported from upstream (see also ++ https://github.com/PyTables/PyTables/pull/587) ++ - new 0007-fix-base-class-order.patch to fix compatibility with ++ Python v2.7.13. ++ See also https://github.com/PyTables/PyTables/issues/590 ++ ++ -- Antonio Valentino Wed, 07 Dec 2016 13:19:56 +0100 ++ ++pytables (3.3.0-4) unstable; urgency=medium ++ ++ * debian/patches ++ - new 0006-Disable-tests-on-bitdhuffle.patch: temporarily disable ++ tests on the blosc bitshuffle filter due to bug #843040 ++ ++ -- Antonio Valentino Thu, 03 Nov 2016 18:13:31 +0000 ++ ++pytables (3.3.0-3) unstable; urgency=medium ++ ++ * debian/patches ++ - improved 0005-Ignore-cpuinfo-on-unsupported-archs.patch to ignore ++ any kind of error from cpuinfo ++ ++ -- Antonio Valentino Tue, 01 Nov 2016 21:35:06 +0000 ++ ++pytables (3.3.0-2) unstable; urgency=medium ++ ++ * debian/patches ++ - new 0005-Ignore-cpuinfo-on-unsupported-archs.patch: ++ fix build on non x86 platforms ++ ++ -- Antonio Valentino Tue, 01 Nov 2016 08:10:06 +0000 ++ ++pytables (3.3.0-1) unstable; urgency=medium ++ ++ * New upstream release ++ * Use packaged blosc library ++ * debian/watch ++ - add compatibility to the new tagging schema ++ * debian/patches ++ - drop 0005-fix-index-inheritance-order.patch and ++ 0006-fix-typo-in-hdf5extension.pyx.patch: applied upstream ++ - new 0005-fix-compatibility-with-HDF5-1.10.patch ++ - drop 0002-Use-system-compression-libs.patch: not necessary ++ - refresh all patches ++ * debian/copyright ++ - add copyright for zsrd source ++ * debian/rules ++ - set hardening flags ++ * debian/control ++ - cleanup and warning suppression ++ - add build dependency from python?-six ++ ++ -- Antonio Valentino Mon, 31 Oct 2016 14:34:18 +0000 ++ ++pytables (3.2.2-3) unstable; urgency=medium ++ * debian/control ++ - standard version bumped to 3.9.8 (no change required) ++ - fix build dependencies: add missing texlive-generic-extra ++ (Closes: #829077) ++ * debian/copyright ++ - fix DEP-5 url ++ ++ -- Antonio Valentino Sat, 02 Jul 2016 09:52:51 +0000 ++ ++pytables (3.2.2-2) unstable; urgency=medium ++ ++ * debian/patches ++ - new 0005-fix-index-inheritance-order.patch to fix the ++ inheritance order of the Index class (Closes: #818501) ++ * debian/copyright ++ - use unambiguous license naae (expat nstead of MIT) ++ - fix LZ4 source code URL ++ * debian/control ++ - standard version bumped to 3.9.7 (no change required) ++ - fix VCS URL ++ - remove not necessary version numbers from build dependency ++ specification ++ * debian/patches ++ - improved formatting of 0003-Never-use-the-msse2-flag-explicitly.patch ++ * Fix typos in manpages ++ ++ -- Antonio Valentino Sun, 27 Mar 2016 08:22:15 +0000 ++ ++pytables (3.2.2-1) unstable; urgency=medium ++ ++ * New upstream release (Closes: #800466) ++ * debian/patches: ++ - drop 0005-Fix-setitem-return-value.patch (applied upstream) ++ ++ -- Antonio Valentino Sat, 03 Oct 2015 16:33:36 +0000 ++ ++pytables (3.2.1-1) unstable; urgency=medium ++ ++ * New upstream version ++ * Fix debian/watch file ++ * Update copyright file ++ * Update authors in debian/python-tables-doc.doc-base ++ * debian/control ++ - updated dependencies versions ++ - added build-dependeny from setuptools ++ - stamdards version bumped to 3.9.6 (no change) ++ - update vcs URLs to the new recommended format ++ - remove deprecated XS-Testsuite field ++ - general update and reformatting (suggested by cme fix dpkg-control) ++ - run tests with utf-8 locale (patch form Barry Warsaw ) ++ * debian/rules ++ - make build reproducible ++ * debian/patches ++ - refresh all patches ++ - drop 0003-Better-control-of-verbosity-in-unittests.patch ++ (applied upstream) ++ - drop 0006-fix-an-import-issue-with-cython-newer-than-0.20.2.patch ++ (applied upstream) ++ - drop 0007-Temporay-desable-tests-that-use-the-lz4-conpressor.patch ++ no longer needed. ++ The issue with lz4 compressor on s39x has been fixed in lz4_0.0~r122-1. ++ - new 0005-Fix-setitem-return-value.patch patch for Python 3.5 compatibility ++ (patch form Barry Warsaw ). Closes: #795333. ++ * README.txt has been renamed into README.rst upsream. ++ Updated python-pytables*.docs files. ++ * New manpage for the pttree utility ++ ++ -- Antonio Valentino Fri, 14 Aug 2015 19:42:08 +0000 ++ ++pytables (3.1.1-3) unstable; urgency=medium ++ ++ * New patch: ++ 0007-Temporay-desable-tests-that-use-the-lz4-conpressor.patch ++ The patch temporay desables tests that use the lz4 conpressor ++ on the s390x platform (see #757581 for more details). ++ ++ -- Antonio Valentino Fri, 15 Aug 2014 07:37:41 +0000 ++ ++pytables (3.1.1-2) unstable; urgency=medium ++ ++ * Support hdf5 1.8.13 new packaging layout (Closes: #756694) ++ * debian/patches ++ - new patch that fixes an import issue with cython > 0.20.2 ++ * debian/control ++ - added an explicit build dependency from dh-python ++ ++ -- Antonio Valentino Mon, 04 Aug 2014 21:29:17 +0000 ++ ++pytables (3.1.1-1) unstable; urgency=medium ++ ++ * New upstream release ++ * debian/control ++ - debug package now depend on python(3)-dbg, python(3)-numpy-dbg, ++ pyhon(3)-numexpr-dbg instead of recommending them ++ (Closes: #742557) ++ - use versioned dependency for lzo (>= 0.0~r114) since one of the ++ symbols used in blosc is missing in earlier versions ++ * debian/patches ++ - new patch (0003-Better-control-of-verbosity-in-unittests.patch) ++ for better control of verbosity in unittests ++ - new patch 0005-Do-not-fetch-icons-for-external-web-sites.patch ++ to avoid fetching data from external web sites in html pages of ++ the doc ++ - the 0003-Only-use-msse2-flag-on-x86_64.patch has been updated ++ after the upstream changes and renamed into ++ 0004-Never-use-the-msse2-flag-explicitly.patch ++ - all remaining patches has been refreshed ++ ++ -- Antonio Valentino Sat, 12 Apr 2014 19:02:49 +0000 ++ ++pytables (3.1.0-2) unstable; urgency=medium ++ ++ * Improved the debian/README.source file (added a note about the ++ external compression libraries included in the source tree) ++ * Only use the -msse2 flag on x86_64 machines ++ ++ -- Antonio Valentino Wed, 05 Mar 2014 22:51:16 +0000 ++ ++pytables (3.1.0-1) unstable; urgency=low ++ ++ * New upstream release (Closes: #734298) ++ * Standard version bumped to 3.9.5 (no changes) ++ * New python(3)-tables-lib packages. ++ The old python(3)-tables packages have been split into ++ python(3)-tables (containing common code for all platforms) and ++ python(3)-tables-lib (containing only platform specific extensions). ++ * New python-tables-data package including all data files used for ++ unit testing ++ * Added autopkgtests running testsuite ++ * debian/patches ++ - removed 0001-Fix-detection-of-platforms-supporting-blosc.patch ++ (applied upstream) ++ - removed 0003-disable-extended-float-support.patch no more ++ necessary ++ - remaining patches have been refreshed ++ - new patch (0002-Use-system-compression-libs.patch) to use ++ system compression libraries instead of internal copies ++ * debian/control ++ - added build dependencies form liblz4-dev and snappy-dev ++ * temporary disabled tests for python3.x-dbg ++ ++ -- Antonio Valentino Sun, 02 Mar 2014 15:47:11 +0000 ++ ++pytables (3.0.0-2) unstable; urgency=low ++ ++ * Explicitly specify the minimum numexpr version in the binary ++ package dependency line ++ ++ -- Antonio Valentino Sat, 21 Sep 2013 17:48:09 +0000 ++ ++pytables (3.0.0-1) experimental; urgency=low ++ ++ * New upstream release ++ * Fix PDF doc installation after upstream changes ++ * Added a man page for the new pt2pt3 command line tool ++ * Build-Depend on numexpr >= 2.1 ++ * Minimum Python version is now 2.6 ++ * New packages for Python 3 ++ * debian/patches: ++ - Refresh all patches ++ - Drop 0002-Fix-detection-od-platforms-supporting-blosc.patch ++ (applied upstream) ++ - New 0002-use-dynamic-lib.patch (fixes an issue with liblzo2.so ++ detection) ++ - New patch for disabling extended float support (workaround for an ++ upstream bug of HDF5 with gcc-4.8) ++ * Fixed the license for win32/pthread.* in the copyright file ++ See also https://code.google.com/p/numexpr/issues/detail?id=109#c5 ++ ++ -- Antonio Valentino Sat, 07 Sep 2013 17:24:24 +0000 ++ ++pytables (2.4.0-4) unstable; urgency=low ++ ++ * Fix the override_dh_sphinxdoc rule to avoid failures when the -doc ++ package is not built ++ ++ -- Antonio Valentino Mon, 24 Jun 2013 20:20:45 +0000 ++ ++pytables (2.4.0-3) unstable; urgency=low ++ ++ * Added build-dependency from jquery-cookie and updated debian/rules ++ to avoid embedded javascript ++ * New patch: fix tests of nested record reperesentation on big-endian ++ machines. Backport of upstream fix for gh-237 (see also ++ https://github.com/PyTables/PyTables/issues/237). ++ * New patch: fix detection od platforms supporting blosc ++ ++ -- Antonio Valentino Sun, 23 Jun 2013 14:14:23 +0000 ++ ++pytables (2.4.0-2) unstable; urgency=low ++ ++ * Added vitables as suggested package (Closes: #702228) ++ * Updated copyright file ++ * Standard version bumped to 3.9.4 (no changes) ++ * Removed obsolete DM-Upload-Allowed field from the control file ++ * Enabled automatic testing for dbg packages ++ * Keep the original name of the upstream changelog ++ * Use canonical URI for VCS-* fields ++ * Fixed unnecessarily versioned build dependencies (silence cme warnings) ++ * Uploading PyTables 2.4 to unstable also fixes a small incompatibility ++ with numpy >= 1.7 (Closes: #713085) ++ ++ -- Antonio Valentino Sun, 23 Jun 2013 13:25:28 +0000 ++ ++pytables (2.4.0-1) experimental; urgency=low ++ ++ [ Antonio Valentino ] ++ * New upstream release (Closes: #698318, #605180) ++ * Improved watch file ++ * Removed all patches (applied upstream) ++ * Updated build dependencies ++ * Set compat to 9 ++ * Updated copyright file ++ ++ -- Yaroslav Halchenko Mon, 28 Jan 2013 10:02:57 -0500 ++ ++pytables (2.3.1-3) unstable; urgency=low ++ ++ [ Antonio Valentino ] ++ * Set Vcs-* fields in the control file (Closes: #657766) ++ * Provide -dbg package (Closes: #399332) ++ * Override dh_install instead of dh_auto_install ++ * Honor nodoc and noopt DEB_BUILD_OPTIONS (Closes: #660001) ++ * Updated copyright format URL ++ * Standard version bumped to 3.9.3 (no changes) ++ * Patch fix_unaligned_mem_access to avoid errors related to unaligned ++ memory access on platforms like ARM, etc (Closes: #661287). ++ The patch has been backported from upstream and originally submtted ++ by Julian Taylor ++ ++ [ Yaroslav Halchenko ] ++ * Patch up_skip_multiprocessing_test_on_gnu to disable test on Hurd and ++ kFreeBSD systems -- multiprocessing locking seems to be N/A ++ ++ [ Julian Taylor ] ++ * fix_library_detection.patch: ++ fixes detection of multiarched bzip and lzo2 (Closes: #657789) ++ * rules: update clean target to remove some remnant files ++ * disable_blosc.patch: ++ disable blosc on armel, armhf, sparc and mipsel ++ not functional due to unaligned memory accesses ++ (Closes: #661287, #661286) ++ * make testsuite output verbose ++ ++ -- Yaroslav Halchenko Mon, 05 Mar 2012 16:32:52 -0500 ++ ++pytables (2.3.1-2) unstable; urgency=low ++ ++ * Avoid unnecessary cythonization during clean ++ * Ensure that build fails in case of test failure ++ * Explicitly set PYTHONPATH before running tests ++ * Call dh_numpy to generate proper dependency on numpy ++ (Closes: #657089) ++ ++ -- Antonio Valentino Sat, 28 Jan 2012 12:39:25 +0100 ++ ++pytables (2.3.1-1) unstable; urgency=low ++ ++ [ Antonio Valentino ] ++ * New upstream release (Closes: #641485) ++ * Watch file updated to point tho the new download site ++ * Copyright file converted to DEP5 format ++ * Removed debian/pycompat file: no more needed ++ * Switch to dpkg-source 3.0 (quilt) format ++ * Switch to dh_python2 (Closes: #616988) ++ * Now use debhelper 8 and the dh sequencer in the debian/rules file ++ * Standard version bumped to 3.9.2 ++ * Build depend from numexpr, cython, pythn-sphinx and texlive-latex-* ++ * No more play with gzip in debian/rules (Closes: #551392) ++ * The package is now maintained under the unbrella of debian-science ++ * Added a debian/README.source file ++ * Enabled automatic testing ++ * Build dependency from the HDF5 library updated to libhdf5-dev ++ (HDF5 transition) ++ ++ [ Yaroslav Halchenko ] ++ * Sponsored the upload ++ ++ -- Yaroslav Halchenko Sun, 22 Jan 2012 22:18:32 -0500 ++ ++pytables (2.1.2-3.1) unstable; urgency=low ++ ++ * Non-maintainer upload. ++ * Build-Depend on versioned python-numpy (>= 1:1.4.1-4~); fixes ++ incompatiblity with python-numpy (Closes: #589669) ++ * debian/rules: add call to dh_numpy to generate stricter versioned ++ depends on python-numpy (Closes: #590761) ++ ++ -- Varun Hiremath Fri, 30 Jul 2010 23:58:31 -0400 ++ ++pytables (2.1.2-3) unstable; urgency=low ++ ++ * Improve the long discription of python-tables-doc (closes: #551391) ++ * Remove the gzip of man1 in rules (close: #551392) ++ * Re-fix the build error with Python-2.6 (closes: #547875) ++ ++ -- Wen Heping Thu, 22 Oct 2009 23:10:23 +0100 ++ ++pytables (2.1.2-2) unstable; urgency=low ++ ++ * Fix the build error with Python-2.6 (closes: #547875) ++ ++ -- Wen Heping Wed, 14 Oct 2009 23:10:23 +0100 ++ ++pytables (2.1.2-1) unstable; urgency=low ++ ++ * New upstream release. ++ * Wen Heping adopt package (closes: #544895) ++ * Add a watch file ++ * Change the standards version to 3.8.3 ++ ++ -- Wen Heping Fri, 09 Oct 2009 18:15:39 +0100 ++ ++pytables (2.0.3-1) unstable; urgency=low ++ ++ * New upstream release. ++ ++ -- Francesc Altet Tue, 18 Mar 2008 18:15:39 +0100 ++ ++pytables (2.0.2-1) unstable; urgency=low ++ ++ * New upstream release. ++ ++ -- Francesc Altet Tue, 27 Nov 2007 19:54:25 +0100 ++ ++pytables (2.0.1-1) unstable; urgency=low ++ ++ * New upstream release. ++ ++ -- Francesc Altet Wed, 19 Sep 2007 13:21:33 +0200 ++ ++pytables (2.0-1) unstable; urgency=low ++ ++ * New upstream release. This no longer depends on numarray (closes: #423797) ++ * Incorporates patch from Didrik Pinte (closes: #431686) ++ * Python 2.5 packages are already available (closes: #391939) ++ ++ -- Francesc Altet Thu, 05 Jul 2007 12:08:45 +0200 ++ ++pytables (1.3.2-2) unstable; urgency=low ++ ++ * Fixed call to pyversions in debian/rules which failed on recent versions ++ of pyversions ++ * Fixed clean rule in debian/rules which left the stamp files behind ++ * Acknowledge NMU ++ * Added Alexandre Fayolle to uploaders ++ ++ -- Alexandre Fayolle Wed, 28 Jun 2006 10:45:03 +0200 ++ ++pytables (1.3.2-1) unstable; urgency=low ++ ++ * New upstream release (closes: #375691) ++ ++ -- Francesc Altet Tue, 27 Jun 2006 19:57:46 +0200 ++ ++pytables (1.3-1.1) unstable; urgency=low ++ ++ * NMU ++ * Comply with the new python policy (removes python2.X-tables ++ packages) (closes: #373508) ++ * Build-Depend on python-numarray (closes: #374177) ++ * Removed versioned dependency on virtual package python2.X-numarray ++ (closes: #374799) ++ ++ -- Alexandre Fayolle Wed, 21 Jun 2006 14:16:13 +0200 ++ ++pytables (1.3-1) unstable; urgency=low ++ ++ * New upstream release. NumPy support added. ++ (Closes: #347743) ++ * Support of new HDF5 1.6.5 packages in debian. ++ * Due to the new dynamic discovery of LZO, UCL and bzip2 libraries, ++ they are not required anymore by binaries. More specifically, LZO ++ and bzip2 are Recommended:, while UCL which is being deprecated in ++ PyTables is just "Suggested:". Many thanks to Steve Langasek for ++ suggesting an automatic way to do this. ++ * Note that, although deprecated, UCL support is in, in order to ++ allow users to migrate existing files to other supported libraries ++ (Zlib, LZO or bzip2). ++ ++ -- Francesc Altet Mon, 10 Apr 2006 12:08:33 +0200 ++ ++pytables (1.1.1-1) unstable; urgency=low ++ ++ * New upstream release. Introduced nested types, enumerated types, ++ native multidimensional attributes and a new CArray object. ++ (Closes: #309018, #308795) ++ * Drop python2.2 packages. ++ ++ -- Francesc Altet Wed, 14 Sep 2005 13:38:23 +0200 ++ ++pytables (0.9.1-2) unstable; urgency=high ++ ++ * Recompiling with libucl1 instead of ucl0 (Closes: #288464) ++ * First package built for Python 2.4. ++ * First support for gcc4 (Closes: #287972) ++ ++ -- Francesc Alted Tue, 11 Jan 2005 17:58:58 +0100 ++ ++pytables (0.9.1-1) unstable; urgency=low ++ ++ * New upstream release. Mainly a maintenance release. ++ ++ -- Francesc Alted Thu, 09 Dec 2004 17:27:04 +0100 ++ ++pytables (0.9-1) unstable; urgency=low ++ ++ * New upstream release. Introduced indexation, support of complex numbers ++ and update of object elements. ++ ++ -- Francesc Alted Fri, 05 Nov 2004 18:10:58 +0100 ++ ++pytables (0.8.1-4) unstable; urgency=high ++ ++ * Recompiled to get a proper dependency on libucl (>=1.03-1). ++ (Closes: #276164). ++ ++ -- Francesc Alted Thu, 14 Oct 2004 10:45:19 +0200 ++ ++pytables (0.8.1-3) unstable; urgency=high ++ ++ * Recompiled to adapt to a numarray ABI change introduced in 1.1. ++ (Closes: #272198). ++ ++ -- Francesc Alted Tue, 21 Sep 2004 12:01:20 +0200 ++ ++pytables (0.8.1-2) unstable; urgency=high ++ ++ * Added python to Build-Depends, as debhelper requires. ++ (Closes: #259501). ++ ++ -- Francesc Alted Thu, 15 Jul 2004 12:15:15 +0200 ++ ++pytables (0.8.1-1) unstable; urgency=high ++ ++ * New upstream release. It is compatible with new numarray-1.0 API. ++ (Closes: #258078). ++ ++ -- Francesc Alted Wed, 14 Jul 2004 12:35:15 +0200 ++ ++pytables (0.8-1) unstable; urgency=low ++ ++ * New upstream version. It has now full 64-bit support ++ (Closes: #226653). ++ ++ -- Francesc Alted Thu, 25 Mar 2004 13:19:15 +0100 ++ ++pytables (0.7.2-2) unstable; urgency=low ++ ++ * Package has been rebuilt in order to use the new libhdf5-1.6.1-0 ++ instead of the previous libhdf5-1.6.0-0. See #202260 and #221699 ++ bug reports for more information (Closes: #221734). ++ ++ -- Francesc Alted Thu, 20 Nov 2003 12:00:51 +0100 ++ ++pytables (0.7.2-1) unstable; urgency=low ++ ++ * First debian release (Closes: #213707) ++ * Sponsored by Daniel Bungert ++ ++ -- Francesc Alted Wed, 08 Oct 2003 13:48:21 +0200 diff --cc debian/control index 0000000,0000000..67fb77a new file mode 100644 --- /dev/null +++ b/debian/control @@@ -1,0 -1,0 +1,171 @@@ ++Source: pytables ++Maintainer: Debian Science Maintainers ++Uploaders: Antonio Valentino , ++ Yaroslav Halchenko ++Section: python ++Priority: optional ++Build-Depends: cython3, ++ debhelper-compat (= 12), ++ dh-python, ++ latexmk, ++ libblosc-dev, ++ libbz2-dev, ++ libhdf5-dev, ++ libjs-jquery-cookie, ++ libjs-mathjax, ++ liblz4-dev, ++ liblzo2-dev, ++ libsnappy-dev, ++ libzstd-dev, ++ locales, ++ pybuild-plugin-pyproject, ++ python3-all-dev, ++ python3-ipython, ++ python3-numexpr, ++ python3-numpy, ++ python3-numpydoc, ++ python3-packaging, ++ python3-sphinx, ++ python3-sphinx-rtd-theme, ++ python3-setuptools, ++ texlive-fonts-recommended, ++ texlive-latex-recommended, ++ texlive-latex-extra, ++ texlive-plain-generic, ++ tex-gyre, ++ zlib1g-dev ++Standards-Version: 4.6.1 ++Vcs-Browser: https://salsa.debian.org/science-team/pytables ++Vcs-Git: https://salsa.debian.org/science-team/pytables.git ++Homepage: https://www.pytables.org ++Rules-Requires-Root: no ++ ++Package: python3-tables ++Architecture: all ++Depends: ${misc:Depends}, ++ ${python3:Depends}, ++ python3-numexpr, ++ python-tables-data (= ${source:Version}), ++ python3-tables-lib (>= ${source:Version}), ++ python3-tables-lib (<< ${source:Version}.1~) ++Suggests: python3-netcdf4, ++ python-tables-doc, ++ vitables ++Description: hierarchical database for Python3 based on HDF5 ++ PyTables is a package for managing hierarchical datasets and designed ++ to efficiently cope with extremely large amounts of data. ++ . ++ It is built on top of the HDF5 library and the NumPy package. It ++ features an object-oriented interface that, combined with C extensions ++ for the performance-critical parts of the code (generated using ++ Cython), makes it a fast, yet extremely easy to use tool for ++ interactively save and retrieve very large amounts of data. One ++ important feature of PyTables is that it optimizes memory and disk ++ resources so that they take much less space (between a factor 3 to 5, ++ and more if the data is compressible) than other solutions, like for ++ example, relational or object oriented databases. ++ . ++ - Compound types (records) can be used entirely from Python (i.e. it ++ is not necessary to use C for taking advantage of them). ++ - The tables are both enlargeable and compressible. ++ - I/O is buffered, so you can get very fast I/O, specially with ++ large tables. ++ - Very easy to select data through the use of iterators over the ++ rows in tables. Extended slicing is supported as well. ++ - It supports the complete set of NumPy objects. ++ . ++ This is the Python 3 version of the package. ++ ++Package: python3-tables-lib ++Architecture: any ++Depends: ${misc:Depends}, ++ ${python3:Depends}, ++ ${shlibs:Depends} ++Recommends: python3-tables (= ${source:Version}) ++Description: hierarchical database for Python3 based on HDF5 (extension) ++ PyTables is a package for managing hierarchical datasets and designed ++ to efficiently cope with extremely large amounts of data. ++ . ++ It is built on top of the HDF5 library and the NumPy package. It ++ features an object-oriented interface that, combined with C extensions ++ for the performance-critical parts of the code (generated using ++ Cython), makes it a fast, yet extremely easy to use tool for ++ interactively save and retrieve very large amounts of data. One ++ important feature of PyTables is that it optimizes memory and disk ++ resources so that they take much less space (between a factor 3 to 5, ++ and more if the data is compressible) than other solutions, like for ++ example, relational or object oriented databases. ++ . ++ - Compound types (records) can be used entirely from Python (i.e. it ++ is not necessary to use C for taking advantage of them). ++ - The tables are both enlargeable and compressible. ++ - I/O is buffered, so you can get very fast I/O, specially with ++ large tables. ++ - Very easy to select data through the use of iterators over the ++ rows in tables. Extended slicing is supported as well. ++ - It supports the complete set of NumPy objects. ++ . ++ This package contains the extension built for the Python 3 interpreter. ++ ++Package: python-tables-doc ++Architecture: all ++Section: doc ++Depends: ${misc:Depends}, ++ ${sphinxdoc:Depends}, ++ libjs-mathjax, ++ libjs-jquery-cookie ++Suggests: xpdf | pdf-viewer, ++ www-browser ++Description: hierarchical database for Python based on HDF5 - documentation ++ PyTables is a package for managing hierarchical datasets and designed ++ to efficiently cope with extremely large amounts of data. ++ . ++ It is built on top of the HDF5 library and the NumPy package. It ++ features an object-oriented interface that, combined with C extensions ++ for the performance-critical parts of the code (generated using ++ Cython), makes it a fast, yet extremely easy to use tool for ++ interactively save and retrieve very large amounts of data. One ++ important feature of PyTables is that it optimizes memory and disk ++ resources so that they take much less space (between a factor 3 to 5, ++ and more if the data is compressible) than other solutions, like for ++ example, relational or object oriented databases. ++ . ++ - Compound types (records) can be used entirely from Python (i.e. it ++ is not necessary to use C for taking advantage of them). ++ - The tables are both enlargeable and compressible. ++ - I/O is buffered, so you can get very fast I/O, specially with ++ large tables. ++ - Very easy to select data through the use of iterators over the ++ rows in tables. Extended slicing is supported as well. ++ - It supports the complete set of NumPy objects. ++ . ++ This package includes the manual in PDF and HTML formats. ++ ++Package: python-tables-data ++Architecture: all ++Multi-Arch: foreign ++Depends: ${misc:Depends} ++Description: hierarchical database for Python based on HDF5 - test data ++ PyTables is a package for managing hierarchical datasets and designed ++ to efficiently cope with extremely large amounts of data. ++ . ++ It is built on top of the HDF5 library and the NumPy package. It ++ features an object-oriented interface that, combined with C extensions ++ for the performance-critical parts of the code (generated using ++ Cython), makes it a fast, yet extremely easy to use tool for ++ interactively save and retrieve very large amounts of data. One ++ important feature of PyTables is that it optimizes memory and disk ++ resources so that they take much less space (between a factor 3 to 5, ++ and more if the data is compressible) than other solutions, like for ++ example, relational or object oriented databases. ++ . ++ - Compound types (records) can be used entirely from Python (i.e. it ++ is not necessary to use C for taking advantage of them). ++ - The tables are both enlargeable and compressible. ++ - I/O is buffered, so you can get very fast I/O, specially with ++ large tables. ++ - Very easy to select data through the use of iterators over the ++ rows in tables. Extended slicing is supported as well. ++ - It supports the complete set of NumPy objects. ++ . ++ This package includes daya fils used for unit testing. diff --cc debian/copyright index 0000000,0000000..c7f9257 new file mode 100644 --- /dev/null +++ b/debian/copyright @@@ -1,0 -1,0 +1,151 @@@ ++Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ ++Upstream-Name: pytables ++Source: http://www.pytables.org ++ ++Files: * ++Copyright: 2002-2004, Francesc Alted ++ 2005-2007, Carabos Coop. V. ++ 2008-2010, Francesc Alted ++ 2011-2021, PyTables maintainers ++License: BSD-3-Clause ++ ++Files: debian/* ++Copyright: 2011-2022, Antonio Valentino ++License: BSD-3-Clause ++ ++Files: src/H5ARRAY.c src/H5VLARRAY.c ++Copyright: 2003, F. Alted ++ 2017, A. Cobb ++License: BSD-3-Clause ++ ++Files: src/H5ATTR.h src/H5ATTR.c src/H5TB-opt.h src/H5TB-opt.c ++Copyright: 1998-2006, the Board of Trustees of the University of Illinois ++ 2006-2007, The HDF Group (THG) ++ 2005, F. Alted ++ 2017, A. Cobb ++License: BSD-style ++ HDF5 (Hierarchical Data Format 5) Software Library and Utilities ++ Copyright 2006-2007 by The HDF Group (THG). ++ . ++ NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities ++ Copyright 1998-2006 by the Board of Trustees of the University of Illinois. ++ . ++ All rights reserved. ++ . ++ Contributors: National Center for Supercomputing Applications (NCSA) ++ at the University of Illinois, Fortner Software, Unidata Program ++ Center (netCDF), The Independent JPEG Group (JPEG), Jean-loup Gailly ++ and Mark Adler (gzip), and Digital Equipment Corporation (DEC). ++ . ++ Redistribution and use in source and binary forms, with or without ++ modification, are permitted for any purpose (including commercial ++ purposes) provided that the following conditions are met: ++ . ++ 1. Redistributions of source code must retain the above copyright ++ notice, this list of conditions, and the following disclaimer. ++ . ++ 2. Redistributions in binary form must reproduce the above ++ copyright notice, this list of conditions, and the following ++ disclaimer in the documentation and/or materials provided with the ++ distribution. ++ . ++ 3. In addition, redistributions of modified forms of the source or ++ binary code must carry prominent notices stating that the original ++ code was changed and the date of the change. ++ . ++ 4. All publications or advertising materials mentioning features or ++ use of this software are asked, but not required, to acknowledge that ++ it was developed by The HDF Group and by the National Center for ++ Supercomputing Applications at the University of Illinois at ++ Urbana-Champaign and credit the contributors. ++ . ++ 5. Neither the name of The HDF Group, the name of the University, ++ nor the name of any Contributor may be used to endorse or promote ++ products derived from this software without specific prior written ++ permission from THG, the University, or the Contributor, respectively. ++ . ++ DISCLAIMER: THIS SOFTWARE IS PROVIDED BY THE HDF GROUP (THG) AND THE ++ CONTRIBUTORS "AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR ++ IMPLIED. In no event shall THG or the Contributors be liable for any ++ damages suffered by the users arising out of the use of this software, ++ even if advised of the possibility of such damage. ++ . ++ Portions of HDF5 were developed with support from the University of ++ California, Lawrence Livermore National Laboratory (UC LLNL). The ++ following statement applies to those portions of the product and must ++ be retained in any redistribution of source code, binaries, ++ documentation, and/or accompanying materials: ++ . ++ This work was partially produced at the University of California, ++ Lawrence Livermore National Laboratory (UC LLNL) under contract ++ no. W-7405-ENG-48 (Contract 48) between the U.S. Department of Energy ++ (DOE) and The Regents of the University of California (University) for ++ the operation of UC LLNL. ++ . ++ DISCLAIMER: This work was prepared as an account of work sponsored by ++ an agency of the United States Government. Neither the United States ++ Government nor the University of California nor any of their ++ employees, makes any warranty, express or implied, or assumes any ++ liability or responsibility for the accuracy, completeness, or ++ usefulness of any information, apparatus, product, or process ++ disclosed, or represents that its use would not infringe privately- ++ owned rights. Reference herein to any specific commercial products, ++ process, or service by trade name, trademark, manufacturer, or ++ otherwise, does not necessarily constitute or imply its endorsement, ++ recommendation, or favoring by the United States Government or the ++ University of California. The views and opinions of authors expressed ++ herein do not necessarily state or reflect those of the United States ++ Government or the University of California, and shall not be used for ++ advertising or product endorsement purposes. ++ ++Files: hdf5-blosc/* ++Copyright: 2010-2016, Francesc Alted ++License: Expat ++ ++Files: cpuinfo.py ++Copyright: 2014-2017, Matthew Brennan Jones ++License: Expat ++ ++License: BSD-3-Clause ++ Redistribution and use in source and binary forms, with or without ++ modification, are permitted provided that the following conditions ++ are met: ++ a. Redistributions of source code must retain the above copyright ++ notice, this list of conditions and the following disclaimer. ++ b. Redistributions in binary form must reproduce the above copyright ++ notice, this list of conditions and the following disclaimer in the ++ documentation and/or other materials provided with the distribution. ++ c. Neither the name of the authors nor the names of its ++ contributors may be used to endorse or promote products derived ++ from this software without specific prior written permission. ++ . ++ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ++ 'AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT ++ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR ++ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT ++ OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, ++ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT ++ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, ++ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY ++ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT ++ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE ++ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. ++ ++License: Expat ++ Permission is hereby granted, free of charge, to any person obtaining ++ a copy of this software and associated documentation files (the "Software"), ++ to deal in the Software without restriction, including without limitation ++ the rights to use, copy, modify, merge, publish, distribute, sublicense, ++ and/or sell copies of the Software, and to permit persons to whom the ++ Software is furnished to do so, subject to the following conditions: ++ . ++ The above copyright notice and this permission notice shall be included in ++ all copies or substantial portions of the Software. ++ . ++ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR ++ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, ++ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE ++ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER ++ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, ++ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN ++ THE SOFTWARE. diff --cc debian/gbp.conf index 0000000,0000000..21d0417 new file mode 100644 --- /dev/null +++ b/debian/gbp.conf @@@ -1,0 -1,0 +1,16 @@@ ++[DEFAULT] ++ ++# The default name for the upstream branch is "upstream". ++# Change it if the name is different (for instance, "master"). ++upstream-branch = upstream ++ ++# The default name for the Debian branch is "master". ++# Change it if the name is different (for instance, "debian/unstable"). ++debian-branch = master ++ ++# git-import-orig uses the following names for the upstream tags. ++# Change the value if you are not using git-import-orig ++upstream-tag = upstream/%(version)s ++ ++# Always use pristine-tar. ++pristine-tar = True diff --cc debian/patches/0001-use-dynamic-lib.patch index 0000000,0000000..025280e new file mode 100644 --- /dev/null +++ b/debian/patches/0001-use-dynamic-lib.patch @@@ -1,0 -1,0 +1,28 @@@ ++From: Antonio Valentino ++Date: Fri, 23 Aug 2013 12:19:58 +0200 ++Subject: use dynamic lib ++ ++The setup script detects the static version of the lzo2 library instead of ++the dynamic version (that is now located in a multi-arch path). ++This causes a link error due to not relacable code (missing -fPIC flag ++at compile time) ++ ++Now the dynamic version of the lzo2 library is located in a multiarch path so ++sthe setup script ++--- ++ setup.py | 2 +- ++ 1 file changed, 1 insertion(+), 1 deletion(-) ++ ++diff --git a/setup.py b/setup.py ++index ab8f8e3..38797af 100755 ++--- a/setup.py +++++ b/setup.py ++@@ -422,7 +422,7 @@ if __name__ == "__main__": ++ ++ class PosixPackage(BasePackage): ++ _library_prefixes = ["lib"] ++- _library_suffixes = [".so", ".dylib", ".a"] +++ _library_suffixes = [".so", ".dylib"] # , ".a"] ++ _runtime_prefixes = _library_prefixes ++ _runtime_suffixes = [".so", ".dylib"] ++ _component_dirs = ["include", "lib", "lib64"] diff --cc debian/patches/0002-use-local-mathjax.patch index 0000000,0000000..119c989 new file mode 100644 --- /dev/null +++ b/debian/patches/0002-use-local-mathjax.patch @@@ -1,0 -1,0 +1,21 @@@ ++From: Antonio Valentino ++Date: Thu, 29 Jun 2017 05:31:26 +0000 ++Subject: use local mathjax ++ ++Forwarded: not-needed ++--- ++ doc/source/conf.py | 4 ++++ ++ 1 file changed, 4 insertions(+) ++ ++diff --git a/doc/source/conf.py b/doc/source/conf.py ++index ba95716..0bdeec5 100644 ++--- a/doc/source/conf.py +++++ b/doc/source/conf.py ++@@ -206,3 +206,7 @@ extlinks = { ++ autodoc_member_order = "groupwise" ++ autoclass_content = "class" ++ autosummary_generate = [] +++ +++# -- Options for mathjax ----------------------------------------------------- +++mathjax_path='file:///usr/share/javascript/mathjax/MathJax.js' +++ diff --cc debian/patches/0003-remove-gtags.patch index 0000000,0000000..bb44ebf new file mode 100644 --- /dev/null +++ b/debian/patches/0003-remove-gtags.patch @@@ -1,0 -1,0 +1,29 @@@ ++From: Antonio Valentino ++Date: Sun, 22 Apr 2018 16:32:56 +0000 ++Subject: remove gtags ++ ++Remove Google Analytics script from the doc template layout to ++avoid privacy-breach-generic. ++--- ++ doc/source/_templates/layout.html | 10 ---------- ++ 1 file changed, 10 deletions(-) ++ ++diff --git a/doc/source/_templates/layout.html b/doc/source/_templates/layout.html ++index f47665b..03b028f 100644 ++--- a/doc/source/_templates/layout.html +++++ b/doc/source/_templates/layout.html ++@@ -2,14 +2,4 @@ ++ ++ {%- block extrahead %} ++ {{ super() }} ++- ++- ++- ++- ++ {% endblock %} diff --cc debian/patches/0004-Skip-index-backcompat-tests-on-bingendian.patch index 0000000,0000000..ee9b2c2 new file mode 100644 --- /dev/null +++ b/debian/patches/0004-Skip-index-backcompat-tests-on-bingendian.patch @@@ -1,0 -1,0 +1,37 @@@ ++From: Antonio Valentino ++Date: Sat, 3 Aug 2019 16:22:13 +0000 ++Subject: Skip index backcompat tests on bingendian ++ ++Forwarded: not-needed ++--- ++ tables/tests/test_index_backcompat.py | 4 ++++ ++ 1 file changed, 4 insertions(+) ++ ++diff --git a/tables/tests/test_index_backcompat.py b/tables/tests/test_index_backcompat.py ++index f845a33..7b922de 100644 ++--- a/tables/tests/test_index_backcompat.py +++++ b/tables/tests/test_index_backcompat.py ++@@ -1,7 +1,9 @@ ++ from tables.tests import common ++ +++import sys ++ ++ # Check indexes from PyTables version 2.0 +++@common.unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian') ++ class IndexesTestCase(common.TestFileMixin, common.PyTablesTestCase): ++ ++ def setUp(self): ++@@ -139,11 +141,13 @@ class IndexesTestCase(common.TestFileMixin, common.PyTablesTestCase): ++ ++ ++ # Check indexes from PyTables version 2.0 +++@common.unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian') ++ class Indexes2_0TestCase(IndexesTestCase): ++ h5fname = common.test_filename("indexes_2_0.h5") ++ ++ ++ # Check indexes from PyTables version 2.1 +++@common.unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian') ++ class Indexes2_1TestCase(IndexesTestCase): ++ h5fname = common.test_filename("indexes_2_1.h5") ++ diff --cc debian/patches/0005-Fix-compatibility-with-numpy-1.22.patch index 0000000,0000000..37d9df8 new file mode 100644 --- /dev/null +++ b/debian/patches/0005-Fix-compatibility-with-numpy-1.22.patch @@@ -1,0 -1,0 +1,34 @@@ ++From: Antonio Valentino ++Date: Tue, 20 Dec 2022 21:09:47 +0000 ++Subject: Fix compatibility with numpy 1.22 ++ ++See also https://github.com/PyTables/PyTables/issues/934. ++ ++Forwarded: not-needed ++Applied-Upstream: https://github.com/PyTables/PyTables/commit/f3bfb0cc2508cd25e29408e25c8a06b211dd27e7 ++--- ++ tables/tests/test_expression.py | 4 ++-- ++ 1 file changed, 2 insertions(+), 2 deletions(-) ++ ++diff --git a/tables/tests/test_expression.py b/tables/tests/test_expression.py ++index 502ae42..018d420 100644 ++--- a/tables/tests/test_expression.py +++++ b/tables/tests/test_expression.py ++@@ -2,6 +2,7 @@ ++ ++ ++ import numpy as np +++from numpy import testing as npt ++ ++ import tables as tb ++ from tables.tests import common ++@@ -895,8 +896,7 @@ class FunctionsTestCase(common.TempFileMixin, common.PyTablesTestCase): ++ if common.verbose: ++ print("Computed expression:", repr(r1), r1.dtype) ++ print("Should look like:", repr(r2), r2.dtype) ++- self.assertTrue(common.areArraysEqual(r1, r2), ++- "Evaluate is returning a wrong value.") +++ npt.assert_array_almost_equal_nulp(r1, r2) ++ ++ ++ # Test for EArrays with maindim != 0 diff --cc debian/patches/series index 0000000,0000000..f62435a new file mode 100644 --- /dev/null +++ b/debian/patches/series @@@ -1,0 -1,0 +1,5 @@@ ++0001-use-dynamic-lib.patch ++0002-use-local-mathjax.patch ++0003-remove-gtags.patch ++0004-Skip-index-backcompat-tests-on-bingendian.patch ++0005-Fix-compatibility-with-numpy-1.22.patch diff --cc debian/pt2to3.1 index 0000000,0000000..68c88e9 new file mode 100644 --- /dev/null +++ b/debian/pt2to3.1 @@@ -1,0 -1,0 +1,55 @@@ ++.\" Hey, EMACS: -*- nroff -*- ++.\" First parameter, NAME, should be all caps ++.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection ++.\" other parameters are allowed: see man(7), man(1) ++.TH PT2TO3 1 "May 15, 2013" ++.\" Please adjust this date whenever revising the manpage. ++.\" ++.\" Some roff macros, for reference: ++.\" .nh disable hyphenation ++.\" .hy enable hyphenation ++.\" .ad l left justify ++.\" .ad b justify to both left and right margins ++.\" .nf disable filling ++.\" .fi enable filling ++.\" .br insert line break ++.\" .sp insert n+1 empty lines ++.\" for manpage-specific macros, see man(7) ++.SH NAME ++pt2to3 \- PyTables 2.x \-> 3.x API transition tool. ++.SH SYNOPSIS ++.B pt2to3 ++[ OPTIONS ] ++.RB filename ++.br ++.SH DESCRIPTION ++This tool displays to standard out, so it is common to pipe this to another ++file: $ pt2to3 oldfile.py > newfile.py. ++ ++.SH OPTIONS ++A summary of options is included below. ++.TP ++.B \-r, \--reverse ++Reverts changes, going from 3.x \-> 2.x. ++.TP ++.B \-p, \--no-ignore-previous ++Ignores previous_api() calls. ++.TP ++.B \-o OUTPUT ++Output file to write to.. ++.TP ++.B \-i, \--inplace ++Overwrites the file in-place. ++.TP ++.B \-h ++Print help on usage. ++ ++.br ++ ++.SH SEE ALSO ++.BR ptrepack (1), ptdump (1). ++.br ++These utilities are documented fully by ++.IR "PyTables user's manual". ++.SH AUTHOR ++This manual page was written by Antonio Valentino . diff --cc debian/ptdump.1 index 0000000,0000000..010aed0 new file mode 100644 --- /dev/null +++ b/debian/ptdump.1 @@@ -1,0 -1,0 +1,63 @@@ ++.\" Hey, EMACS: -*- nroff -*- ++.\" First parameter, NAME, should be all caps ++.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection ++.\" other parameters are allowed: see man(7), man(1) ++.TH PTDUMP 1 "July 7, 2007" ++.\" Please adjust this date whenever revising the manpage. ++.\" ++.\" Some roff macros, for reference: ++.\" .nh disable hyphenation ++.\" .hy enable hyphenation ++.\" .ad l left justify ++.\" .ad b justify to both left and right margins ++.\" .nf disable filling ++.\" .fi enable filling ++.\" .br insert line break ++.\" .sp insert n+1 empty lines ++.\" for manpage-specific macros, see man(7) ++.SH NAME ++ptdump \- Lets you dig into the contents of a \fIPyTables\fR file. ++.SH SYNOPSIS ++.B ptdump ++.RB [\| \-dvacih \|] ++.RB [\| \-R \| \ start,stop,step] ++.RB file[:nodepath] ++.br ++.SH DESCRIPTION ++Allows you look into the contents of your \fIPyTables\fR files. It lets ++you see not only the data but also the metadata (that is, the structure ++and additional information in the form of attributes). ++ ++.SH OPTIONS ++A summary of options is included below. ++.TP ++.B \-d ++Dump data information on leaves. ++.TP ++.B \-v ++Dump more metainformation on nodes. ++.TP ++.B \-a ++Show attributes in nodes (only useful when \-v or \-d are active). ++.TP ++.B \-c ++Show info of columns in tables (only useful when \-v or \-d are active). ++.TP ++.B \-i ++Show info of indexed column (only useful when \-v or \-d are active). ++.TP ++.BI \-R\ start,stop,step ++Select a range of rows in the form "start,stop,step" for \fIall\fR leaves. ++.TP ++.B \-h ++Print help on usage. ++ ++.br ++ ++.SH SEE ALSO ++.BR ptrepack (1). ++.br ++These utilities are documented fully by ++.IR "PyTables user's manual". ++.SH AUTHOR ++This manual page was written by Francesc Altet . diff --cc debian/ptrepack.1 index 0000000,0000000..4eebf98 new file mode 100644 --- /dev/null +++ b/debian/ptrepack.1 @@@ -1,0 -1,0 +1,107 @@@ ++.\" Hey, EMACS: -*- nroff -*- ++.\" First parameter, NAME, should be all caps ++.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection ++.\" other parameters are allowed: see man(7), man(1) ++.TH PTREPACK 1 "July 7, 2007" ++.\" Please adjust this date whenever revising the manpage. ++.\" ++.\" Some roff macros, for reference: ++.\" .nh disable hyphenation ++.\" .hy enable hyphenation ++.\" .ad l left justify ++.\" .ad b justify to both left and right margins ++.\" .nf disable filling ++.\" .fi enable filling ++.\" .br insert line break ++.\" .sp insert n+1 empty lines ++.\" for manpage-specific macros, see man(7) ++.SH NAME ++ptrepack \- Copy any PyTables Leaf, Group or complete subtree into another file. ++.SH SYNOPSIS ++.B ptrepack ++.RB \-h ++.RB \-v ++.RB \-o ++.RB \-R ++.IR start,stop,step ++.RB \-\-non\-recursive ++.RB \-\-dest-title=title ++.RB \-\-dont\-copyuser\-attrs ++.RB \-\-overwrite\-nodes ++.RB \-\-complevel=(0\-9) ++.RB \-\-complib=lib ++.RB \-\-shuffle=(0|1) ++.RB \-\-fletcher32=(0|1) ++.RB \-\-keep\-source\-filters ++.RB \-\-upgrade\-flavors ++.RB \-\-dont\-regenerate\-old\-indexes ++.RB sourcefile:sourcegroup ++.RB destfile:destgroup ++.br ++.SH DESCRIPTION ++Copy any Leaf, Group or complete subtree from a PyTables file into another file. ++.SH OPTIONS ++A summary of options is included below. ++.TP ++.B \-h ++Prints a help text. ++.TP ++.B \-v ++Show more information. ++.TP ++.B \-o ++Overwrite destination file. ++.TP ++.BI \-R\ RANGE ++Select a RANGE of rows in the form \fIstart,stop,step\fR during the copy of ++\fIall\fR the leaves. ++.TP ++.BI \-\-non\-recursive ++Do not do a recursive copy. Default is to do it. ++.TP ++.BI \-\-dest\-title=title ++Title for the new file (if not specified, the source is copied). ++.TP ++.BI \-\-dont\-copy\-userattrs ++Do not copy the user attrs (default is to do it). ++.TP ++.BI \-\-overwrite\-nodes ++Overwrite destination nodes if they exist. Default is not to overwrite ++them. ++.TP ++.BI \-\-complevel=(0-9) ++Set a compression level (0 for no compression, which is the default). ++.TP ++.BI \-\-complib=lib ++Set the compression library to be used during the copy. \fIlib\fR can ++be set to "zlib", "lzo", "ucl" or "bzip2". Defaults to "zlib". ++.TP ++.BI \-\-shuffle=(0|1) ++Activate or not the shuffling filter (default is active if complevel>0). ++.TP ++.BI \-\-fletcher32=(0|1) ++Whether to activate or not the fletcher32 filter (not active by default). ++.TP ++.BI \-\-keep\-source\-filters ++Use the original filters in source files. The default is not doing that ++if any of \-\-complevel, \-\-complib, \-\-shuffle or \-\-fletcher32 ++option is specified. ++.TP ++.BI \-\-upgrade\-flavors ++When repacking PyTables 1.x files, the flavor of leaves will be ++unset. With this, such a leaves will be serialized as objects with the ++internal flavor ("numpy" for 2.x series). ++.TP ++.BI \-\-dont\-regenerate\-old\-indexes ++Disable regenerating old indexes. The default is to regenerate old ++indexes as they are found. ++ ++.br ++ ++.SH SEE ALSO ++.BR ptdump (1). ++.br ++These utilities are documented fully by ++.IR "PyTables user's manual". ++.SH AUTHOR ++This manual page was written by Francesc Altet . diff --cc debian/pttree.1 index 0000000,0000000..04bdb6d new file mode 100644 --- /dev/null +++ b/debian/pttree.1 @@@ -1,0 -1,0 +1,79 @@@ ++.\" Hey, EMACS: -*- nroff -*- ++.\" First parameter, NAME, should be all caps ++.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection ++.\" other parameters are allowed: see man(7), man(1) ++.TH pttree 1 "May 15, 2013" ++.\" Please adjust this date whenever revising the manpage. ++.\" ++.\" Some roff macros, for reference: ++.\" .nh disable hyphenation ++.\" .hy enable hyphenation ++.\" .ad l left justify ++.\" .ad b justify to both left and right margins ++.\" .nf disable filling ++.\" .fi enable filling ++.\" .br insert line break ++.\" .sp insert n+1 empty lines ++.\" for manpage-specific macros, see man(7) ++.SH NAME ++pttree \- prints a quick overview of the contents of PyTables HDF5 files. ++.SH SYNOPSIS ++.B pttree ++[ OPTIONS ] ++.RB filename[:nodepath] ++.br ++.SH DESCRIPTION ++.B pttree ++is designed to give a quick overview of the contents of a PyTables ++HDF5 file by printing a depth-indented list of nodes, similar to the output of ++the Unix `tree` function. It can also display the size, shape and compression ++states of individual nodes, as well as summary information for the whole file. ++For a more verbose output (including metadata), see `ptdump`. ++ ++.SH OPTIONS ++A summary of options is included below. ++.TP ++.B \-L MAX_DEPTH, \--max-level MAX_DEPTH ++maximum branch depth of tree to display (-1 == no limit) ++.TP ++.B \-S SORT_BY, \--sort-by SORT_BY ++artificially order nodes, can be either "size", "name" or "none" ++.TP ++.B \--print-size ++print size of each node/branch ++.TP ++.B \--no-print-size ++.TP ++.B \--print-shape ++print shape of each node ++.TP ++.B \--no-print-shape ++.TP ++.B \--print-compression ++print compression library(level) for each compressed node ++.TP ++.B \--no-print-compression ++.TP ++.B \--print-percent ++print size of each node as a % of the total tree size on disk ++.TP ++.B \--no-print-percent ++.TP ++.B \--use-si-units ++report sizes in SI units (1 MB == 10^6 B) ++.TP ++.B \--use-binary-units ++report sizes in binary units (1 MiB == 2^20 B) ++.TP ++.B \-h ++Print help on usage. ++ ++.br ++ ++.SH SEE ALSO ++.BR ptdump (1). ++.br ++These utilities are documented fully by ++.IR "PyTables user's manual". ++.SH AUTHOR ++This manual page was written by Antonio Valentino . diff --cc debian/python-tables-data.install index 0000000,0000000..670ac07 new file mode 100644 --- /dev/null +++ b/debian/python-tables-data.install @@@ -1,0 -1,0 +1,5 @@@ ++usr/lib/python3*/dist-packages/tables/tests/*.h5 usr/share/python-tables/tests ++usr/lib/python3*/dist-packages/tables/tests/*.mat usr/share/python-tables/tests ++usr/lib/python3*/dist-packages/tables/nodes/tests/*.h5 usr/share/python-tables/nodes/tests ++usr/lib/python3*/dist-packages/tables/nodes/tests/*.xbm usr/share/python-tables/nodes/tests ++usr/lib/python3*/dist-packages/tables/nodes/tests/*.dat usr/share/python-tables/nodes/tests diff --cc debian/python-tables-doc.doc-base index 0000000,0000000..a64a022 new file mode 100644 --- /dev/null +++ b/debian/python-tables-doc.doc-base @@@ -1,0 -1,0 +1,17 @@@ ++Document: pytables ++Title: Debian pytables Manual ++Author: Francesc Alted, Ivan Vilata, Scott Prater, Vicent Mas, Tom Hedley, ++ Antonio Valentino, Jeffrey Whitaker, Anthony Scopatz, Andrea Bedini ++Abstract: This document includes the PyTables user manual and the ++ reference guide for developers. ++Section: Programming/Python ++ ++Format: HTML ++Index: /usr/share/doc/python-tables-doc/html/index.html ++Files: /usr/share/doc/python-tables-doc/html/*.html ++ ++Format: text ++Files: /usr/share/doc/python-tables-doc/html/_sources/*.txt ++ ++Format: pdf ++Files: /usr/share/doc/python-tables-doc/usersguide.pdf diff --cc debian/python-tables-doc.docs index 0000000,0000000..5123ce8 new file mode 100644 --- /dev/null +++ b/debian/python-tables-doc.docs @@@ -1,0 -1,0 +1,4 @@@ ++ANNOUNCE.txt ++README.rst ++RELEASE_NOTES.rst ++THANKS diff --cc debian/python-tables-doc.examples index 0000000,0000000..e39721e new file mode 100644 --- /dev/null +++ b/debian/python-tables-doc.examples @@@ -1,0 -1,0 +1,1 @@@ ++examples/* diff --cc debian/python-tables-doc.install index 0000000,0000000..1c6b2f0 new file mode 100644 --- /dev/null +++ b/debian/python-tables-doc.install @@@ -1,0 -1,0 +1,3 @@@ ++bench usr/share/doc/python-tables-doc ++doc/html usr/share/doc/python-tables-doc ++doc/usersguide.pdf usr/share/doc/python-tables-doc diff --cc debian/python-tables-doc.links index 0000000,0000000..5c6f570 new file mode 100644 --- /dev/null +++ b/debian/python-tables-doc.links @@@ -1,0 -1,0 +1,3 @@@ ++usr/share/javascript/jquery-cookie/jquery.cookie.js usr/share/doc/python-tables-doc/html/_static/jquery.cookie.js ++usr/share/doc/python-tables-doc/html/_sources/release-notes/RELEASE_NOTES_v2.1.x-pro.rst.txt usr/share/doc/python-tables-doc/html/_sources/release-notes/RELEASE_NOTES_v2.1.x.rst.txt ++ diff --cc debian/python3-tables-lib.install index 0000000,0000000..8e91eb5 new file mode 100644 --- /dev/null +++ b/debian/python3-tables-lib.install @@@ -1,0 -1,0 +1,1 @@@ ++usr/lib/python3*/*-packages/tables/*.cpython-3*.so diff --cc debian/python3-tables.install index 0000000,0000000..c9acb6d new file mode 100644 --- /dev/null +++ b/debian/python3-tables.install @@@ -1,0 -1,0 +1,8 @@@ ++usr/lib/python3*/dist-packages/tables/*.py ++usr/lib/python3*/dist-packages/tables/misc/*.py ++usr/lib/python3*/dist-packages/tables/nodes/*.py ++usr/lib/python3*/dist-packages/tables/nodes/tests/*.py ++usr/lib/python3*/dist-packages/tables/scripts/*.py ++usr/lib/python3*/dist-packages/tables/tests/*.py ++usr/lib/python3*/dist-packages/tables*.*-info ++usr/bin/* diff --cc debian/python3-tables.links index 0000000,0000000..de64fc6 new file mode 100644 --- /dev/null +++ b/debian/python3-tables.links @@@ -1,0 -1,0 +1,51 @@@ ++usr/share/python-tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 usr/lib/python3/dist-packages/tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 ++usr/share/python-tables/tests/Tables_lzo1.h5 usr/lib/python3/dist-packages/tables/tests/Tables_lzo1.h5 ++usr/share/python-tables/tests/Tables_lzo1_shuffle.h5 usr/lib/python3/dist-packages/tables/tests/Tables_lzo1_shuffle.h5 ++usr/share/python-tables/tests/Tables_lzo2.h5 usr/lib/python3/dist-packages/tables/tests/Tables_lzo2.h5 ++usr/share/python-tables/tests/Tables_lzo2_shuffle.h5 usr/lib/python3/dist-packages/tables/tests/Tables_lzo2_shuffle.h5 ++usr/share/python-tables/tests/array_mdatom.h5 usr/lib/python3/dist-packages/tables/tests/array_mdatom.h5 ++usr/share/python-tables/tests/attr-u16.h5 usr/lib/python3/dist-packages/tables/tests/attr-u16.h5 ++usr/share/python-tables/tests/blosc_bigendian.h5 usr/lib/python3/dist-packages/tables/tests/blosc_bigendian.h5 ++usr/share/python-tables/tests/bug-idx.h5 usr/lib/python3/dist-packages/tables/tests/bug-idx.h5 ++usr/share/python-tables/tests/elink.h5 usr/lib/python3/dist-packages/tables/tests/elink.h5 ++usr/share/python-tables/tests/elink2.h5 usr/lib/python3/dist-packages/tables/tests/elink2.h5 ++usr/share/python-tables/tests/ex-noattr.h5 usr/lib/python3/dist-packages/tables/tests/ex-noattr.h5 ++usr/share/python-tables/tests/flavored_vlarrays-format1.6.h5 usr/lib/python3/dist-packages/tables/tests/flavored_vlarrays-format1.6.h5 ++usr/share/python-tables/tests/float.h5 usr/lib/python3/dist-packages/tables/tests/float.h5 ++usr/share/python-tables/tests/idx-std-1.x.h5 usr/lib/python3/dist-packages/tables/tests/idx-std-1.x.h5 ++usr/share/python-tables/tests/indexes_2_0.h5 usr/lib/python3/dist-packages/tables/tests/indexes_2_0.h5 ++usr/share/python-tables/tests/indexes_2_1.h5 usr/lib/python3/dist-packages/tables/tests/indexes_2_1.h5 ++usr/share/python-tables/tests/issue_368.h5 usr/lib/python3/dist-packages/tables/tests/issue_368.h5 ++usr/share/python-tables/tests/issue_560.h5 usr/lib/python3/dist-packages/tables/tests/issue_560.h5 ++usr/share/python-tables/tests/itemsize.h5 usr/lib/python3/dist-packages/tables/tests/itemsize.h5 ++usr/share/python-tables/tests/nested-type-with-gaps.h5 usr/lib/python3/dist-packages/tables/tests/nested-type-with-gaps.h5 ++usr/share/python-tables/tests/non-chunked-table.h5 usr/lib/python3/dist-packages/tables/tests/non-chunked-table.h5 ++usr/share/python-tables/tests/oldflavor_numeric.h5 usr/lib/python3/dist-packages/tables/tests/oldflavor_numeric.h5 ++usr/share/python-tables/tests/out_of_order_types.h5 usr/lib/python3/dist-packages/tables/tests/out_of_order_types.h5 ++usr/share/python-tables/tests/python2.h5 usr/lib/python3/dist-packages/tables/tests/python2.h5 ++usr/share/python-tables/tests/python3.h5 usr/lib/python3/dist-packages/tables/tests/python3.h5 ++usr/share/python-tables/tests/scalar.h5 usr/lib/python3/dist-packages/tables/tests/scalar.h5 ++usr/share/python-tables/tests/slink.h5 usr/lib/python3/dist-packages/tables/tests/slink.h5 ++usr/share/python-tables/tests/smpl_SDSextendible.h5 usr/lib/python3/dist-packages/tables/tests/smpl_SDSextendible.h5 ++usr/share/python-tables/tests/smpl_compound_chunked.h5 usr/lib/python3/dist-packages/tables/tests/smpl_compound_chunked.h5 ++usr/share/python-tables/tests/smpl_enum.h5 usr/lib/python3/dist-packages/tables/tests/smpl_enum.h5 ++usr/share/python-tables/tests/smpl_f64be.h5 usr/lib/python3/dist-packages/tables/tests/smpl_f64be.h5 ++usr/share/python-tables/tests/smpl_f64le.h5 usr/lib/python3/dist-packages/tables/tests/smpl_f64le.h5 ++usr/share/python-tables/tests/smpl_i32be.h5 usr/lib/python3/dist-packages/tables/tests/smpl_i32be.h5 ++usr/share/python-tables/tests/smpl_i32le.h5 usr/lib/python3/dist-packages/tables/tests/smpl_i32le.h5 ++usr/share/python-tables/tests/smpl_i64be.h5 usr/lib/python3/dist-packages/tables/tests/smpl_i64be.h5 ++usr/share/python-tables/tests/smpl_i64le.h5 usr/lib/python3/dist-packages/tables/tests/smpl_i64le.h5 ++usr/share/python-tables/tests/smpl_unsupptype.h5 usr/lib/python3/dist-packages/tables/tests/smpl_unsupptype.h5 ++usr/share/python-tables/tests/test_szip.h5 usr/lib/python3/dist-packages/tables/tests/test_szip.h5 ++usr/share/python-tables/tests/time-table-vlarray-1_x.h5 usr/lib/python3/dist-packages/tables/tests/time-table-vlarray-1_x.h5 ++usr/share/python-tables/tests/times-nested-be.h5 usr/lib/python3/dist-packages/tables/tests/times-nested-be.h5 ++usr/share/python-tables/tests/vlstr_attr.h5 usr/lib/python3/dist-packages/tables/tests/vlstr_attr.h5 ++usr/share/python-tables/tests/vlunicode_endian.h5 usr/lib/python3/dist-packages/tables/tests/vlunicode_endian.h5 ++usr/share/python-tables/tests/zerodim-attrs-1.3.h5 usr/lib/python3/dist-packages/tables/tests/zerodim-attrs-1.3.h5 ++usr/share/python-tables/tests/zerodim-attrs-1.4.h5 usr/lib/python3/dist-packages/tables/tests/zerodim-attrs-1.4.h5 ++usr/share/python-tables/tests/matlab_file.mat usr/lib/python3/dist-packages/tables/tests/matlab_file.mat ++usr/share/python-tables/tests/test_ref_array1.mat usr/lib/python3/dist-packages/tables/tests/test_ref_array1.mat ++usr/share/python-tables/tests/test_ref_array2.mat usr/lib/python3/dist-packages/tables/tests/test_ref_array2.mat ++usr/share/python-tables/nodes/tests/test_filenode_v1.h5 usr/lib/python3/dist-packages/tables/nodes/tests/test_filenode_v1.h5 ++usr/share/python-tables/nodes/tests/test_filenode.xbm usr/lib/python3/dist-packages/tables/nodes/tests/test_filenode.xbm ++usr/share/python-tables/nodes/tests/test_filenode.dat usr/lib/python3/dist-packages/tables/nodes/tests/test_filenode.dat diff --cc debian/python3-tables.lintian-overrides index 0000000,0000000..f9f9998 new file mode 100644 --- /dev/null +++ b/debian/python3-tables.lintian-overrides @@@ -1,0 -1,0 +1,6 @@@ ++# scripts for entry points of support tools ++python3-tables: application-in-library-section python [usr/bin/pt*] ++library-package-name-for-application [usr/bin/pt*] ++ ++# the python-tables-data package only contains common data ++python-package-depends-on-package-from-other-python-variant Depends: python-tables-data diff --cc debian/python3-tables.manpages index 0000000,0000000..2189ff1 new file mode 100644 --- /dev/null +++ b/debian/python3-tables.manpages @@@ -1,0 -1,0 +1,4 @@@ ++debian/ptdump.1 ++debian/ptrepack.1 ++debian/pt2to3.1 ++debian/pttree.1 diff --cc debian/rules index 0000000,0000000..c0f1aac new file mode 100755 --- /dev/null +++ b/debian/rules @@@ -1,0 -1,0 +1,74 @@@ ++#!/usr/bin/make -f ++# -*- makefile -*- ++ ++#export DH_VERBOSE=1 ++ ++export DEB_BUILD_MAINT_OPTIONS=hardening=+all # ,-pie ++ ++include /usr/share/dpkg/pkg-info.mk ++# SOURCE_DATE_EPOCH ?= $(shell date -d "$$(dpkg-parsechangelog -S Date)" +%s) ++BUILD_DATE=$(shell LC_ALL=C date --utc --date="@$(SOURCE_DATE_EPOCH)" "+%B %d, %Y") ++SPHINXOPTS := -D today="$(BUILD_DATE)" ++SPHINXOPTS += -D html_last_updated_fmt="$(BUILD_DATE)" ++ ++ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),) ++ export HDF5_DIR := /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial ++endif ++ ++export DISABLE_AVX2=1 DISABLE_SSE2=1 ++ ++ ++%: ++ dh $@ --with python3,sphinxdoc --buildsystem=pybuild ++ ++ ++override_dh_auto_build: export http_proxy=127.0.0.1:9 ++override_dh_auto_build: export https_proxy=127.0.0.1:9 ++override_dh_auto_build: ++ $(MAKE) ANNOUNCE.txt ++ dh_auto_build --buildsystem=pybuild ++ifeq (,$(filter nodoc,$(DEB_BUILD_OPTIONS))) ++ cd $(CURDIR)/.pybuild/cpython3_$(shell py3versions -vd)/build && \ ++ env PYTHONPATH=. python3 -m sphinx -M html $(CURDIR)/doc/source $(CURDIR)/doc/build -N $(SPHINXOPTS) ++ cd $(CURDIR)/.pybuild/cpython3_$(shell py3versions -vd)/build && \ ++ env PYTHONPATH=. python3 -m sphinx -M latexpdf $(CURDIR)/doc/source $(CURDIR)/doc/build -N $(SPHINXOPTS) ++ mv doc/build/html doc/html ++ mv doc/build/latex/usersguide-*.pdf doc/usersguide.pdf ++else ++ mkdir -p doc/html ++ touch doc/usersguide.pdf ++endif ++ ++ ++override_dh_python3: ++ dh_python3 ++ dh_numpy3 ++ ++ ++override_dh_strip: ++ dh_strip -ppython3-tables-lib ++ ++ ++override_dh_auto_test: ++ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) ++ PYBUILD_SYSTEM=custom \ ++ PYBUILD_TEST_ARGS="cd {build_dir} && env PYTHONPATH=. python{version} -m unittest -v tables.tests.test_all.suite" \ ++ dh_auto_test ++endif ++ ++ ++override_dh_auto_clean: ++ # Avoid unnecessary cythonization (see ++ # https://github.com/PyTables/PyTables/issues/122) ++ #dh_auto_clean --buildsystem=pybuild ++ $(MAKE) distclean ++ $(RM) -r doc/*.pdf tables.egg-info tmp-locales ++ $(RM) -r .pybuild ++ ++ ++override_dh_installchangelogs: ++ dh_installchangelogs -k RELEASE_NOTES.rst ++ ++ ++override_dh_compress: ++ dh_compress -X.txt -X.pdf -X.py -X.h5 diff --cc debian/source/format index 0000000,0000000..163aaf8 new file mode 100644 --- /dev/null +++ b/debian/source/format @@@ -1,0 -1,0 +1,1 @@@ ++3.0 (quilt) diff --cc debian/source/lintian-overrides index 0000000,0000000..c979e41 new file mode 100644 --- /dev/null +++ b/debian/source/lintian-overrides @@@ -1,0 -1,0 +1,2 @@@ ++# Man pages already forwarded upstream ++maintainer-manual-page [debian/pt*.1] diff --cc debian/tests/control index 0000000,0000000..174348e new file mode 100644 --- /dev/null +++ b/debian/tests/control @@@ -1,0 -1,0 +1,2 @@@ ++Tests: python3 ++Depends: python3-tables, python3-all diff --cc debian/tests/python3 index 0000000,0000000..af79825 new file mode 100755 --- /dev/null +++ b/debian/tests/python3 @@@ -1,0 -1,0 +1,12 @@@ ++#!/bin/sh ++set -efu ++ ++PYS=${PYS:-"$(py3versions -s 2>/dev/null)"} ++TESTPKG=${TESTPKG:-tables} ++ ++cd "$AUTOPKGTEST_TMP" ++ ++for py in $PYS; do ++ echo "=== $py ===" ++ $py -c "import $TESTPKG, sys; sys.exit($TESTPKG.test(verbose=2))" 2>&1 ++done diff --cc debian/upstream/metadata index 0000000,0000000..4f9b7aa new file mode 100644 --- /dev/null +++ b/debian/upstream/metadata @@@ -1,0 -1,0 +1,4 @@@ ++Bug-Database: https://github.com/PyTables/PyTables/issues ++Bug-Submit: https://github.com/PyTables/PyTables/issues/new ++Repository: https://github.com/PyTables/PyTables.git ++Repository-Browse: https://github.com/PyTables/PyTables diff --cc debian/watch index 0000000,0000000..56aebae new file mode 100644 --- /dev/null +++ b/debian/watch @@@ -1,0 -1,0 +1,3 @@@ ++version=4 ++opts=filenamemangle=s/.+\/v\.?(\d\S*)\.tar\.gz/PyTables-$1\.tar\.gz/ \ ++ https://github.com/PyTables/PyTables/tags .*/v\.?(\d\S*)\.tar\.gz