From: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Date: Wed, 20 Feb 2019 10:45:47 +0000 (+0000)
Subject: skip_test_needing_missing_data
X-Git-Tag: archive/raspbian/0.15.2+ds-2+rpi1^2~3
X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=e84f98db9cc912bf54b9d30d336ae8cb68745cf9;p=python-pysam.git

skip_test_needing_missing_data


Gbp-Pq: Name skip_test_needing_missing_data.patch
---

diff --git a/tests/AlignmentFile_test.py b/tests/AlignmentFile_test.py
index 39abaf7..dcaac69 100644
--- a/tests/AlignmentFile_test.py
+++ b/tests/AlignmentFile_test.py
@@ -1402,11 +1402,6 @@ class TestEmptyHeader(unittest.TestCase):
                                              'example_empty_header.bam'))
         self.assertEqual(s.header.to_dict(), {'SQ': [{'LN': 1000, 'SN': 'chr1'}]})
 
-    def test_bam_without_seq_in_header(self):
-        s = pysam.AlignmentFile(os.path.join(BAM_DATADIR, "example_no_seq_in_header.bam"))
-        self.assertTrue("SQ" in s.header.to_dict())
-        self.assertTrue("@SQ" in str(s.header))
-
 
 class TestMismatchingHeader(unittest.TestCase):
     '''see issue 716.'''