From: Aaron M. Ucko <ucko@debian.org>
Date: Wed, 3 Aug 2016 23:04:54 +0000 (-0400)
Subject: Import upstream patch to fix Boost version detection.
X-Git-Tag: archive/raspbian/2.16.0+ds-7+rpi1~1^2~215
X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=d9babb92097242f33d3af2d5b1674214229d5442;p=ncbi-blast%2B.git

Import upstream patch to fix Boost version detection.

Import a fix that missed the 2.4.0 release branch as
debian/patches/fix_version_extraction.
---

diff --git a/debian/changelog b/debian/changelog
index e74d1fdf..12151b1a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,8 +2,10 @@ ncbi-blast+ (2.4.0-1) UNRELEASED; urgency=medium
 
   * New upstream release.  (NOT RELEASED YET.)
   * Refresh patches; drop fix_kfreebsd_ftbs.patch (applied upstream).
+  * Import upstream patch to fix Boost version detection (which missed the
+    2.4.0 release branch) as debian/patches/fix_version_extraction.
 
- -- Aaron M. Ucko <ucko@debian.org>  Wed, 03 Aug 2016 18:58:57 -0400
+ -- Aaron M. Ucko <ucko@debian.org>  Wed, 03 Aug 2016 19:04:54 -0400
 
 ncbi-blast+ (2.3.0-2) unstable; urgency=medium
 
diff --git a/debian/patches/fix_version_extraction b/debian/patches/fix_version_extraction
new file mode 100644
index 00000000..14951cc0
--- /dev/null
+++ b/debian/patches/fix_version_extraction
@@ -0,0 +1,124 @@
+--- a/c++/src/build-system/configure
++++ b/c++/src/build-system/configure
+@@ -31352,15 +31352,21 @@ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h.  */
+ 
++cat >/dev/null <<_NCBI_EOF
+ #include <db.h>
+-ncbi_cv_lib_berkeley_db_version=DB_VERSION_MAJOR.DB_VERSION_MINOR.DB_VERSION_PATCH
++_NCBI_EOF
++get_DB_VERSION() {
++    grep '^[^#]' <<_NCBI_EOF
++DB_VERSION_MAJOR.DB_VERSION_MINOR.DB_VERSION_PATCH
++_NCBI_EOF
++}
++ncbi_cv_lib_berkeley_db_version=\`get_DB_VERSION | tr -cd 0123456789.\`
+ 
+ _ACEOF
+-          eval "$ac_cpp $BERKELEYDB_INCLUDE conftest.$ac_ext" \
+-             2>&5 | grep '^ncbi_cv_' \
+-             | tr -d "$wschars" > conftest.sh
++          eval "$ac_cpp $BERKELEYDB_INCLUDE conftest.$ac_ext" > conftest.sh \
++             2>&5
+           . ./conftest.sh
+-          rm -f contest*
++          rm -f conftest*
+ 
+ fi
+ { echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_version" >&5
+@@ -33569,16 +33575,27 @@ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h.  */
+ 
++cat >/dev/null <<_NCBI_EOF
+ #include <boost/version.hpp>
+-ncbi_cv_lib_boost_version_num=BOOST_VERSION
+-ncbi_cv_lib_boost_version=BOOST_LIB_VERSION
++_NCBI_EOF
++get_BOOST_VERSION() {
++    grep '^[^#]' <<_NCBI_EOF
++BOOST_VERSION
++_NCBI_EOF
++}
++get_BOOST_LIB_VERSION() {
++    grep '^[^#]' <<_NCBI_EOF
++BOOST_LIB_VERSION
++_NCBI_EOF
++}
++ncbi_cv_lib_boost_version_num=\`get_BOOST_VERSION\`
++ncbi_cv_lib_boost_version=\`get_BOOST_LIB_VERSION | tr -d '"'\`
+ 
+ _ACEOF
+-          eval "$ac_cpp $BOOST_INCLUDE conftest.$ac_ext" \
+-             2>&5 | grep '^ncbi_cv_' \
+-             | tr -d "$wschars" > conftest.sh
++          eval "$ac_cpp $BOOST_INCLUDE conftest.$ac_ext" > conftest.sh \
++             2>&5
+           . ./conftest.sh
+-          rm -f contest*
++          rm -f conftest*
+ 
+ fi
+ { echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_version" >&5
+--- a/c++/src/build-system/configure.ac
++++ b/c++/src/build-system/configure.ac
+@@ -4905,14 +4905,20 @@ if test "$with_bdb" != "no" ; then
+       AC_CACHE_CHECK([Berkeley DB version (4.3 or newer required)],
+          ncbi_cv_lib_berkeley_db_version,
+          [AC_LANG_CONFTEST([AC_LANG_SOURCE([[
++cat >/dev/null <<_NCBI_EOF
+ #include <db.h>
+-ncbi_cv_lib_berkeley_db_version=DB_VERSION_MAJOR.DB_VERSION_MINOR.DB_VERSION_PATCH
++_NCBI_EOF
++get_DB_VERSION() {
++    grep '^[^#]' <<_NCBI_EOF
++DB_VERSION_MAJOR.DB_VERSION_MINOR.DB_VERSION_PATCH
++_NCBI_EOF
++}
++ncbi_cv_lib_berkeley_db_version=\`get_DB_VERSION | tr -cd 0123456789.\`
+           ]])])
+-          eval "$ac_cpp $BERKELEYDB_INCLUDE conftest.$ac_ext" \
+-             2>&AS_MESSAGE_LOG_FD | grep '^ncbi_cv_' \
+-             | tr -d "$wschars" > conftest.sh
++          eval "$ac_cpp $BERKELEYDB_INCLUDE conftest.$ac_ext" > conftest.sh \
++             2>&AS_MESSAGE_LOG_FD
+           . ./conftest.sh
+-          rm -f contest*
++          rm -f conftest*
+          ])
+       case "$ncbi_cv_lib_berkeley_db_version" in
+          1.* | 2.* | 3.* | 4.[[0-2]].* )
+@@ -5181,15 +5187,26 @@ if test "$with_boost" != "no"; then
+       AC_CACHE_CHECK([Boost version],
+          ncbi_cv_lib_boost_version,
+          [AC_LANG_CONFTEST([AC_LANG_SOURCE([[
++cat >/dev/null <<_NCBI_EOF
+ #include <boost/version.hpp>
+-ncbi_cv_lib_boost_version_num=BOOST_VERSION
+-ncbi_cv_lib_boost_version=BOOST_LIB_VERSION
++_NCBI_EOF
++get_BOOST_VERSION() {
++    grep '^[^#]' <<_NCBI_EOF
++BOOST_VERSION
++_NCBI_EOF
++}
++get_BOOST_LIB_VERSION() {
++    grep '^[^#]' <<_NCBI_EOF
++BOOST_LIB_VERSION
++_NCBI_EOF
++}
++ncbi_cv_lib_boost_version_num=\`get_BOOST_VERSION\`
++ncbi_cv_lib_boost_version=\`get_BOOST_LIB_VERSION | tr -d '"'\`
+           ]])])
+-          eval "$ac_cpp $BOOST_INCLUDE conftest.$ac_ext" \
+-             2>&AS_MESSAGE_LOG_FD | grep '^ncbi_cv_' \
+-             | tr -d "$wschars" > conftest.sh
++          eval "$ac_cpp $BOOST_INCLUDE conftest.$ac_ext" > conftest.sh \
++             2>&AS_MESSAGE_LOG_FD
+           . ./conftest.sh
+-          rm -f contest*
++          rm -f conftest*
+          ])
+       AC_DEFINE_UNQUOTED(NCBI_EXPECTED_BOOST_VERSION,
+          $ncbi_cv_lib_boost_version_num,
diff --git a/debian/patches/series b/debian/patches/series
index 40551826..349f1631 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -6,3 +6,4 @@ no_multiarch_rpath
 use_pie_for_apps
 skip_services_unit_test
 fix_configure
+fix_version_extraction