From: Charles Plessy Date: Thu, 13 Jan 2011 10:59:48 +0000 (+0900) Subject: # DRAFT package. X-Git-Tag: archive/raspbian/0.22.0+ds-1+rpi1~1^2^2~464 X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=d936adf68e110077cbf61938771d129bd7e75a6d;p=python-pysam.git # DRAFT package. --- diff --git a/debian/compat b/debian/compat index 7f8f011..45a4fb7 100644 --- a/debian/compat +++ b/debian/compat @@ -1 +1 @@ -7 +8 diff --git a/debian/control b/debian/control index f0e2757..5a912b2 100644 --- a/debian/control +++ b/debian/control @@ -1,15 +1,16 @@ Source: pysam -Section: unknown -Priority: extra +Section: science +Priority: optional Maintainer: Charles Plessy -Build-Depends: debhelper (>= 7.0.50~) +Build-Depends: debhelper (>= 8), cython Standards-Version: 3.9.1 -Homepage: -#Vcs-Git: git://git.debian.org/collab-maint/pysam.git -#Vcs-Browser: http://git.debian.org/?p=collab-maint/pysam.git;a=summary +Homepage: http://code.google.com/p/pysam/ +Vcs-Git: git://git.debian.org/debian-med/pysam.git +Vcs-Browser: http://git.debian.org/?p=debian-med/pysam.git -Package: pysam +Package: python-pysam Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} -Description: - +Depends: ${shlibs:Depends}, ${misc:Depends}, python-pyrex +Description: interface for the SAM/BAM sequence alignment and mapping format + Pysam is a python module for reading and manipulating Samfiles. It's a + lightweight wrapper of the samtools C-API. diff --git a/debian/copyright b/debian/copyright index 45a8eae..ecea701 100644 --- a/debian/copyright +++ b/debian/copyright @@ -1,37 +1,28 @@ -This work was packaged for Debian by: - - Charles Plessy on Thu, 13 Jan 2011 19:32:07 +0900 - -It was downloaded from: - - - -Upstream Author(s): - - - - -Copyright: - - - - -License: - - - -The Debian packaging is: - - Copyright (C) 2011 Charles Plessy - -# Please choose a license for your packaging work. If the program you package -# uses a mainstream license, using the same license is the safest choice. -# Please avoid to pick license terms that are more restrictive than the -# packaged work, as it may make Debian's contributions unacceptable upstream. -# If you just want it to be GPL version 3, leave the following lines in. - -and is licensed under the GPL version 3, -see "/usr/share/common-licenses/GPL-3". - -# Please also look if there are files or directories which have a -# different copyright/license attached and list them here. +Name: Pysam +Source: http://pysam.googlecode.com/files/pysam-0.3.1.tar.gz +Copyright: © 2008-2009 Genome Research Ltd. +License: MIT + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + . + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + THE SOFTWARE. + + +===== +DRAFT +===== + +The copyright of samtools and tabix must be documented as well ! diff --git a/debian/rules b/debian/rules index b760bee..4067ba0 100755 --- a/debian/rules +++ b/debian/rules @@ -1,13 +1,4 @@ #!/usr/bin/make -f -# -*- makefile -*- -# Sample debian/rules that uses debhelper. -# This file was originally written by Joey Hess and Craig Small. -# As a special exception, when this file is copied by dh-make into a -# dh-make output file, you may use that output file without restriction. -# This special exception was added by Craig Small in version 0.37 of dh-make. - -# Uncomment this to turn on verbose mode. -#export DH_VERBOSE=1 %: dh $@ diff --git a/debian/watch b/debian/watch index 6523a7a..e48efe1 100644 --- a/debian/watch +++ b/debian/watch @@ -1,23 +1,4 @@ -# Example watch control file for uscan -# Rename this file to "watch" and then you can run the "uscan" command -# to check for upstream updates and more. -# See uscan(1) for format - -# Compulsory line, this is a version 3 file version=3 -# Uncomment to examine a Webpage -# -#http://www.example.com/downloads.php pysam-(.*)\.tar\.gz - -# Uncomment to examine a Webserver directory -#http://www.example.com/pub/pysam-(.*)\.tar\.gz - -# Uncommment to examine a FTP server -#ftp://ftp.example.com/pub/pysam-(.*)\.tar\.gz debian uupdate - -# Uncomment to find new files on sourceforge, for devscripts >= 2.9 -# http://sf.net/pysam/pysam-(.*)\.tar\.gz - -# Uncomment to find new files on GooglePages -# http://example.googlepages.com/foo.html pysam-(.*)\.tar\.gz +http://code.google.com/p/pysam/downloads/list \ + http://pysam.googlecode.com/files/pysam-(.*).tar.gz