From: Drew Parsons Date: Sat, 16 Jan 2021 12:26:56 +0000 (+0000) Subject: scipy (1.6.0-2) unstable; urgency=medium X-Git-Tag: archive/raspbian/1.8.1-20+rpi1~1^2^2~5 X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=d16377461060785ed6f2f9d24bf39a0251d58dfe;p=scipy.git scipy (1.6.0-2) unstable; urgency=medium * Team upload. * upload new upstream version to unstable [dgit import unpatched scipy 1.6.0-2] --- d16377461060785ed6f2f9d24bf39a0251d58dfe diff --cc debian/README.source index 00000000,00000000..3b29b1d3 new file mode 100644 --- /dev/null +++ b/debian/README.source @@@ -1,0 -1,0 +1,12 @@@ ++Creating source package ++======================= ++ ++In the upstream supplied source tarball, certain source files are ++missing which are present in the upstream subversion repository. ++ ++The debian/orig-tar.sh script adds the missing source files and ++creates a DFSG compatible source tarball for debian release. Please ++use the 'rules/get-orig-source' target to create the tarball for ++debian packaging. ++ ++-- Varun Hiremath Fri, 30 Jul 2010 18:27:23 -0400 diff --cc debian/changelog index 00000000,00000000..86cef94f new file mode 100644 --- /dev/null +++ b/debian/changelog @@@ -1,0 -1,0 +1,1144 @@@ ++scipy (1.6.0-2) unstable; urgency=medium ++ ++ * Team upload. ++ * upload new upstream version to unstable ++ ++ -- Drew Parsons Sat, 16 Jan 2021 23:26:56 +1100 ++ ++scipy (1.6.0-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * Standards-Version: 4.5.1 ++ * drop debian/python3-scipy.docs: Thanks.txt no longer shipped. ++ * update debian/copyright for new features ++ - benchmarks/benchmarks/go_benchmark_functions/*.py ++ Copyright: 2013 Andrea Gavana ++ License: expat ++ - scipy/fft/_pocketfft/pocketfft.cxx ++ Copyright: 2010-2019 Max-Planck-Society, Martin Reinecke ++ 2019 Peter Bell. License: BSD-3-clause ++ - scipy/fft/_pocketfft/pocketfft_hdronly.h ++ Copyright: 2010-2019 Max-Planck-Society, Martin Reinecke ++ 2019 Peter Bell, 2003,2007-2014 Matteo Frigo, ++ Massachusetts Institute of Technology. License: BSD-3-clause ++ - scipy/optimize/_highs/* ++ Copyright: 2020 ERGO-Code ++ License: Expat ++ - scipy/sparse/csgraph/_matching.pyx ++ Copyright: 1987, A. Volgenant/Amsterdam School of Economics, ++ University of Amsterdam. License: BSD-3-clause ++ - scipy/_lib/uarray/* ++ Copyright: 2018, Quansight-Labs ++ License: BSD-3-clause ++ ++ -- Drew Parsons Wed, 06 Jan 2021 19:57:43 +1100 ++ ++scipy (1.5.4-1) unstable; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ ++ -- Drew Parsons Sat, 14 Nov 2020 13:36:06 +0800 ++ ++scipy (1.5.3-2) unstable; urgency=medium ++ ++ * Team upload. ++ * push new upstream release to unstable ++ ++ -- Drew Parsons Thu, 05 Nov 2020 03:33:52 +0800 ++ ++scipy (1.5.3-1) experimental; urgency=medium ++ ++ * Team upload. ++ ++ [ Ondřej Nový ] ++ * d/control: Update Maintainer field with new Debian Python Team ++ contact address. ++ * d/control: Update Vcs-* fields with new Debian Python Team Salsa ++ layout. ++ ++ [ Drew Parsons ] ++ * New upstream release. ++ ++ -- Drew Parsons Tue, 03 Nov 2020 13:32:21 +0800 ++ ++scipy (1.5.2-2) unstable; urgency=medium ++ ++ * Team upload. ++ * debian/tests (autopkgtest): add a new test case using BLAS=libblis3 ++ ++ -- Drew Parsons Sat, 01 Aug 2020 12:49:57 +0800 ++ ++scipy (1.5.2-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - update versioned Build-Depends: cython3 (>= 0.29.18), ++ python3-numpy (>= 1:1.14.5), python3-pybind11 (>= 2.4.3) ++ - builds with gfortran 10. Closes: #957780. ++ * debhelper compatibility level 13 ++ ++ -- Drew Parsons Fri, 24 Jul 2020 15:17:18 +0800 ++ ++scipy (1.4.1-2) unstable; urgency=medium ++ ++ * Team upload. ++ * bring new upstream version to unstable ++ ++ -- Drew Parsons Sat, 18 Apr 2020 11:08:42 +0800 ++ ++scipy (1.4.1-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - applies debian patches fix_custom_sampling_input_2b3ed61.patch ++ and fix_test_NAN_input_iv_7806757.diff ++ - deprecates debian patch use_local_objects.inv.patch ++ - Build-Depends: python3-pybind11 (>= 2.4.0) ++ - Build-Depends-Indep: python3-sphinx (>= 2~) ++ * provide PYTHONPATH as env variable with make doc ++ * Standards-Version: 4.5.0 ++ ++ -- Drew Parsons Fri, 17 Apr 2020 01:11:18 +0800 ++ ++scipy (1.3.3-3) unstable; urgency=medium ++ ++ * Team upload. ++ * skip sparsetools.TestInt32Overflow tests test_bsr_1_block and ++ test_bsr_n_block (they regularly timeout) ++ ++ -- Drew Parsons Fri, 06 Dec 2019 10:22:05 +0800 ++ ++scipy (1.3.3-2) unstable; urgency=medium ++ ++ * Team upload. ++ * add debian patches to avoid internet connections when using docs ++ - css_font_OpenSans.patch adapts font settings from ++ https://fonts.googleapis.com/css?family=Open+Sans ++ (Apache 2.0 licence) ++ - css_font_local.patch uses local font_OpenSans.css from ++ css_font_OpenSans.patch ++ - python-scipy-doc Depends: fonts-open-sans ++ - Closes: #873433. ++ * debian patch fix_custom_sampling_input_2b3ed61.patch applies ++ upstream commit 2b3ed61 to fix syntax. Closes: #945093. ++ ++ -- Drew Parsons Thu, 05 Dec 2019 00:30:25 +0800 ++ ++scipy (1.3.3-1) unstable; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * change source package name to scipy for python3-only, to ++ distinguish from python-scipy which supports python2. ++ * update Vcs salsa repo name to scipy (from python-scipy) ++ ++ -- Drew Parsons Wed, 27 Nov 2019 20:53:58 +0800 ++ ++python-scipy (1.3.1-1exp3) experimental; urgency=medium ++ ++ * Team upload. ++ * update versioned Build-Depends: python3-numpy (>= 1:1.13.3) ++ and cython3 (>= 0.29.2) ++ * Patch fix_test_NAN_input_iv_7806757.diff applies upstream commit ++ 7806757 to fix tests on hppa, riscv64, sparc64. Closes: #934806. ++ ++ -- Drew Parsons Fri, 16 Aug 2019 13:20:27 +0800 ++ ++python-scipy (1.3.1-1exp2) experimental; urgency=medium ++ ++ * Team upload. ++ * build binaries before building docs ++ ++ -- Drew Parsons Tue, 13 Aug 2019 18:45:38 +0800 ++ ++python-scipy (1.3.1-1exp1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - drops support for Python 2 (python-scipy is no longer provided) ++ - applies patches ++ matrix_API_614847c5.patch ++ matrix_API_filter_check_87e48c3c5.patch ++ matrix_API_more_e0cfa29e2.patch ++ fix_test_optim_canonical_constraint_2d7e7e8c.patch ++ * adjust skipping of spatial tests according to context of test ++ (openblas,atlas specify scipy.spatial) ++ ++ -- Drew Parsons Tue, 13 Aug 2019 15:04:07 +0800 ++ ++python-scipy (1.2.2-8) unstable; urgency=medium ++ ++ * Team upload. ++ ++ [ Ondřej Nový ] ++ * Bump Standards-Version to 4.4.1. ++ ++ [ Drew Parsons ] ++ * only build docs for default python3. Closes: #942794. ++ - apply dh_auto_install to arch-dependent packages only ++ ++ -- Drew Parsons Tue, 19 Nov 2019 02:32:19 +0800 ++ ++python-scipy (1.2.2-7) unstable; urgency=medium ++ ++ * Team upload. ++ * Patch fix_test_NAN_input_iv_7806757.diff applies upstream commit ++ 7806757 to fix tests on mipsel, hppa, riscv64, sparc64 ++ (taken from 1.3.1-1exp3) ++ ++ -- Drew Parsons Sun, 25 Aug 2019 20:37:32 +0800 ++ ++python-scipy (1.2.2-6) unstable; urgency=medium ++ ++ * Team upload. ++ * atlas, openblas tests Depends: python3 ++ ++ -- Drew Parsons Sun, 25 Aug 2019 01:47:34 +0800 ++ ++python-scipy (1.2.2-5) unstable; urgency=medium ++ ++ * Team upload. ++ * adjust skipping of sparse and spatial tests according to context ++ of test (openblas and atlas specify scipy.sparse, scipy.spatial) ++ * run atlas and openblas tests with python3 not python2 ++ ++ -- Drew Parsons Sat, 24 Aug 2019 11:42:02 +0800 ++ ++python-scipy (1.2.2-4) unstable; urgency=medium ++ ++ * Team upload. ++ * debian patch Use-system-LBFGSB.patch: ++ run test_minimize_l_bfgs_maxls with rtol=1e-5 ++ ++ -- Drew Parsons Tue, 30 Jul 2019 09:28:55 +0800 ++ ++python-scipy (1.2.2-3) unstable; urgency=medium ++ ++ * Team upload. ++ * run build-time tests over all versions of python3 ++ * Build-Depends: liblbfgsb-dev and add Debian patch ++ Use-system-LBFGSB.patch to use the system L-BFGS-B library (which ++ uses LAPACK rather than the scipy-bundled LINPACK) ++ Enables test_minimize_l_bfgs_maxls in scipy.optimize to succeed. ++ Thanks Gard Spreemann. Closes: #778635. ++ ++ -- Drew Parsons Tue, 30 Jul 2019 00:26:20 +0800 ++ ++python-scipy (1.2.2-2) unstable; urgency=medium ++ ++ * Team upload. ++ * debhelper compatibility level 12 ++ - run configure build step through pybuild to get consistent ++ build directories ++ - set PYLIBPATH to pybuild build directory ++ * debian/rules: use AUTOPKGTEST_TMP instead of ADTTMP to run tests ++ * v1.2.2 fixes indexing in fftpack. Closes: #924396. ++ * drop ignore_DeprecationWarning_diff1.2.patch (already applied in ++ scipy 1.2) ++ * Register docs with doc-base. Closes: #846253. ++ * debian/tests/python3: skip tests of ++ scipy.spatial.tests.test__plotutils.TestPlotting ++ (see https://github.com/scipy/scipy/issues/9946) ++ ++ -- Drew Parsons Mon, 29 Jul 2019 18:43:34 +0800 ++ ++python-scipy (1.2.2-1) unstable; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * configure debian/watch to grab tar.xz rather than tar.gz ++ (for smaller tarballs) ++ * debian/rules: build with dh --buildsystem=pybuild ++ * Standards-Version: 4.4.0 ++ ++ -- Drew Parsons Fri, 26 Jul 2019 15:22:36 +0800 ++ ++python-scipy (1.2.1-1exp1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ ++ -- Drew Parsons Thu, 28 Feb 2019 11:16:38 +0800 ++ ++python-scipy (1.2.0-1) experimental; urgency=medium ++ ++ * New upstream release ++ ++ -- Julian Taylor Tue, 15 Jan 2019 12:27:45 +0100 ++ ++python-scipy (1.1.0-7) unstable; urgency=medium ++ ++ * Team upload. ++ * Patch fix_test_optim_canonical~onstraint_2d7e7e8c.patch applies ++ upstream patch 2d7e7e8 to fix occasional random failures in ++ test_canonical_constraint.test_concatenation. ++ ++ -- Drew Parsons Fri, 12 Apr 2019 00:46:35 +0800 ++ ++python-scipy (1.1.0-6) unstable; urgency=medium ++ ++ * Team upload. ++ * skip sparsetools.TestInt32Overflow matvec tests on python3 also. ++ ++ -- Drew Parsons Thu, 11 Apr 2019 09:38:17 +0800 ++ ++python-scipy (1.1.0-5) unstable; urgency=medium ++ ++ * Team upload. ++ * Skip sparsetools.TestInt32Overflow matvec tests on python2 ++ (MemoryError). Closes: #919929. ++ ++ -- Drew Parsons Wed, 10 Apr 2019 16:41:47 +0800 ++ ++python-scipy (1.1.0-4) unstable; urgency=medium ++ ++ * Team upload. ++ * Replace patch ignore_DeprecationWarning_diff1.2.patch with ++ matrix_API_614847c5.patch ++ matrix_API_filter_check_87e48c3c5.patch ++ matrix_API_more_e0cfa29e2.patch ++ adapting the indicated upstream commits to scipy 1.1.0 ++ (use numpy.matmul instead of @ for matrix multiplication, since @ ++ is not available in python2) ++ Removes sources of matrix DeprecationWarnings. ++ Addresses: Bug#919929. ++ ++ -- Drew Parsons Thu, 14 Mar 2019 14:12:00 +0800 ++ ++python-scipy (1.1.0-3) unstable; urgency=medium ++ ++ * Team upload. ++ * Debian patch ignore_DeprecationWarning_diff1.2.patch applies diff ++ of pytest.ini between scipy 1.1 and 1.2 to ignore ++ DeprecationWarnings from numpy 1.16. Addresses Bug#919929. ++ * Use default gfortran-8 on s390x. unroll-loops was fixed in ++ gcc-8 8.2.0-18. Closes: #906198, #915738. ++ ++ -- Drew Parsons Fri, 08 Mar 2019 00:31:29 +0800 ++ ++python-scipy (1.1.0-2) unstable; urgency=medium ++ ++ * Team upload. ++ * Remove Alexandre Fayolle from the Uploaders list. Thanks for your ++ previous contributions! Closes: #833329 ++ * Use gfortran-7 on s390x to work around a regression causing the imexam ++ test suite to fail when scipy is built with gfortran 8. Addresses: #906198 ++ * Add some Multi-Arch markers suggested by the m-a hinter. ++ ++ -- Mattia Rizzolo Sun, 04 Nov 2018 19:01:19 +0100 ++ ++python-scipy (1.1.0-1) unstable; urgency=medium ++ ++ [ Julian Taylor ] ++ * New upstream release ++ Closes: #896060, #901380, #896635 ++ * update to debian/compat 9 and standard 4.1.4 ++ ++ [ Ondřej Nový ] ++ * d/control: Set Vcs-* to salsa.debian.org ++ * d/copyright: Use https protocol in Format field ++ * d/tests: Use AUTOPKGTEST_TMP instead of ADTTMP ++ * d/control: Remove ancient X-Python-Version field ++ * d/control: Remove ancient X-Python3-Version field ++ ++ -- Julian Taylor Sun, 01 Jul 2018 14:34:28 +0200 ++ ++python-scipy (0.19.1-2) unstable; urgency=medium ++ ++ * Replace python-imaging recomments with python-pil (Closes: #866468) ++ * build documentation with python3-sphinx ++ * Fix atlas and openblas tests for openblas and atlas multiarch locations ++ Thanks to Matthias Klose for the patch (Closes: #876007) ++ * Depend on python-all-dbg for autopkgtests ++ Thanks to Michael Hudson-Doyle for the patch (Closes: #864699) ++ * bump standard to 4.1.3 ++ - debian/control: replace priority extra with optional ++ ++ -- Julian Taylor Sun, 07 Jan 2018 14:38:57 +0100 ++ ++python-scipy (0.19.1-1) unstable; urgency=medium ++ ++ * New upstream release ++ * weave has been removed, drop its patch blitz++.patch ++ * drop cap-ld-precision.patch, fixed in numpy ++ ++ -- Julian Taylor Wed, 06 Sep 2017 18:07:38 +0200 ++ ++python-scipy (0.18.1-2.1) unstable; urgency=high ++ ++ * Non-maintainer upload. ++ * No-change rebuild to build without _PyFPE symbols. ++ ++ -- Matthias Klose Tue, 05 Sep 2017 16:36:34 +0200 ++ ++python-scipy (0.18.1-2) unstable; urgency=medium ++ ++ * fix dbg package import (Closes: #840264) ++ * add dbg package import adt tests ++ ++ -- Julian Taylor Fri, 21 Oct 2016 16:10:57 +0200 ++ ++python-scipy (0.18.1-1) unstable; urgency=medium ++ ++ [ Julian Taylor ] ++ * New upstream bugfix release ++ ++ [ Sebastian Humenda ] ++ * make the build-indep target execute the build target to allow the usage of ++ the module for generating the documentation (Closes: #806867) ++ ++ -- Julian Taylor Sun, 25 Sep 2016 11:25:21 +0200 ++ ++python-scipy (0.18.0-1) unstable; urgency=medium ++ ++ * New upstream release ++ * add python-setuptools to build depends ++ ++ -- Julian Taylor Sat, 30 Jul 2016 19:05:17 +0200 ++ ++python-scipy (0.17.1-1) unstable; urgency=medium ++ ++ [ Julian Taylor ] ++ * New upstream bugfix release ++ * enable parallel build based on DEB_BUILD_OPTIONS ++ * bump standard to 3.9.7, no changes required ++ ++ [ Ondřej Nový ] ++ * Fixed VCS URL (https) ++ ++ -- Julian Taylor Mon, 23 May 2016 20:02:14 +0200 ++ ++python-scipy (0.17.0-1) unstable; urgency=medium ++ ++ * New upstream release ++ ++ -- Julian Taylor Sat, 23 Jan 2016 20:39:44 +0100 ++ ++python-scipy (0.16.1-1) unstable; urgency=medium ++ ++ * New upstream bugfix release ++ * update adt-tests to new layout ++ * remove duplicate files in -doc package ++ ++ -- Julian Taylor Sun, 25 Oct 2015 11:51:34 +0100 ++ ++python-scipy (0.16.0-2) unstable; urgency=medium ++ ++ [ Julian Taylor ] ++ * bump cython build-depend to required 0.22 ++ ++ [ Jean-Christophe Jaskula ] ++ * fix build of documentation in arch only builds ++ ++ -- Julian Taylor Mon, 24 Aug 2015 09:51:10 +0200 ++ ++python-scipy (0.16.0-1) unstable; urgency=medium ++ ++ [ Varun Hiremath ] ++ * New upstream release ++ * Bump Standards-Version to 3.9.6 ++ * Remove upstream applied patches: ++ - fitpack-alias.patch ++ - fix-undefined-behavior-in-alngam.patch ++ - relax-bounds-of-interpolate-test.patch ++ * d/rules: minor build fixes ++ ++ [ Jean-Christophe Jaskula ] ++ * Pointed debian/watch to github.com (cleaner sources) ++ * d/control: ++ - Added dh_python to B-d ++ - Removed unnecessary XS-Testsuite field ++ * Linking to local javascript libraries ++ - use_local_mathjax.patch ++ * Using local intersphinx objects ++ - use_local_objects.patch ++ * Cleaned debian/copyright ++ ++ -- Varun Hiremath Sun, 23 Aug 2015 23:01:46 -0400 ++ ++python-scipy (0.14.1-1) unstable; urgency=medium ++ ++ * New upstream bugfix release ++ remove upstream applied patches: ++ - numpy-version-fix.patch ++ - numpy_ufunc.patch ++ - put-_gen-classes-back.patch ++ - put-back-veccdf.patch ++ - sparse-fix-omitted-types.patch ++ - sparse-superlu-fix.patch ++ * add python-gmpy2 dependency to autopkgtest to speed up mpmath tests ++ * add suggest on python-scipy-doc (Closes: #760522) ++ * debian/copyright: add bootstrap Apache 2.0 license ++ ++ -- Julian Taylor Fri, 05 Sep 2014 18:56:54 +0200 ++ ++python-scipy (0.14.0-2) unstable; urgency=medium ++ ++ * add patches to fix test failures on i386 and mips: ++ - fix-undefined-behavior-in-alngam.patch (Closes: #756905) ++ - relax-bounds-of-interpolate-test.patch ++ * add patches from 0.14.x maintenance branch: ++ - sparse-superlu-fix.patch: fix crash ++ - sparse-fix-omitted-types.patch: fix crash ++ - put-back-veccdf.patch: restore stats api ++ - put-_gen-classes-back.patch: restore stats api ++ - numpy-version-fix.patch: fix wrong version check ++ - numpy_ufunc.patch: compatibility with numpy 1.9 ++ ++ -- Julian Taylor Wed, 27 Aug 2014 14:40:24 +0200 ++ ++python-scipy (0.14.0-1) unstable; urgency=low ++ ++ [ Denis Laxalde ] ++ * Add the documentation binary package (Closes: #600547). ++ ++ [ Julian Taylor ] ++ * New upstream release ++ * drop not swig build dependency and reswig.patch, not needed anymore ++ * use embedded six, current unstable version not compatible ++ * fitpack-alias.patch: fix wrong aliasing in interpolate.splder ++ ++ -- Julian Taylor Fri, 23 May 2014 10:37:06 +0200 ++ ++python-scipy (0.13.3-2) unstable; urgency=medium ++ ++ * upload to unstable ++ * add build-essential dependency to adt tests, needed for weave ++ ++ -- Julian Taylor Mon, 31 Mar 2014 23:32:16 +0200 ++ ++python-scipy (0.13.3-1) experimental; urgency=low ++ ++ * New upstream release ++ * ignore TestSplder.test_kink adt failure, probably numerical error ++ ++ -- Julian Taylor Tue, 04 Feb 2014 19:48:01 +0100 ++ ++python-scipy (0.13.2-1) experimental; urgency=low ++ ++ * New upstream release ++ * update X-Python-Version to >= 2.6 ++ * require python3-numpy (>= 1:1.7.2) for hashing fixes ++ * bump standard to 3.9.5, no changes required ++ * bump cython dependency to >= 0.19 to avoid leaks with fused types ++ ++ -- Julian Taylor Mon, 21 Oct 2013 18:59:29 +0200 ++ ++python-scipy (0.13.0~b1-1) experimental; urgency=low ++ ++ [ Julian Taylor ] ++ * New upstream beta release ++ * require python-six >= 1.3.0, scipy ships a slightly patched 1.2.0, ++ version 1.3.0 includes the patches ++ ++ [ Varun Hiremath ] ++ * Fix debian/watch file ++ ++ -- Julian Taylor Sat, 07 Sep 2013 18:06:00 +0200 ++ ++python-scipy (0.12.0-3) unstable; urgency=high ++ ++ * temporary-directory-usage.patch: ++ fix insecure temporary directory usage of weave module. (Closes: #726093) ++ Thanks to Tomas Tomecek for the patch. ++ ++ -- Julian Taylor Tue, 22 Oct 2013 23:44:47 +0200 ++ ++python-scipy (0.12.0-2) unstable; urgency=low ++ ++ * ignore testsuite failures to not block python3.3 transition ++ only masks issues on hardly used ports ++ ++ -- Julian Taylor Mon, 01 Jul 2013 20:09:40 +0200 ++ ++python-scipy (0.12.0-1) unstable; urgency=low ++ ++ [ Julian Taylor ] ++ * New upstream release, no repackaging required anymore ++ - Closes: #707315 ++ - Closes: #691254 ++ * also fail on test failures not only test errors ++ * skip failing test_mio on big endian python3 >= 3.2 ++ * print skipped tests and unused skips in autopkgtest scripts ++ * add-swig-filetypes.patch, reswig.patch: ++ reswigging from setup.py, dropped from debian/rules ++ * cython-wraparound.patch: fix issue in ckdtree.pyx ++ * qhull-lfs.patch: enable large file support ++ * cap-ld-precision.patch: fix test failures due to broken np.finfo on ppc ++ * refresh patches and remove upstream applied: ++ - BUG-fix-dependency-on-dict-ordering-in-test.patch ++ - BUG-remove-inline-statement-rejected-by-cython.patch ++ - fix-dbg-crash.patch ++ - fix-f2py-dependencies.patch ++ - fix-test_basic.py-cephes_vs_amos_mass_te.patch ++ - python3.3-incdir.diff ++ * Bump standard to 3.9.4, no changes required ++ * drop unused sharutils build depend and python-profiler from suggests ++ * use system python-six and python-decorator instead of embedded copies ++ * don't install setup.py and generator scripts ++ ++ [ Jakub Wilk ] ++ * Use canonical URIs for Vcs-* fields. ++ * Remove DM-Upload-Allowed; it's no longer used by the archive ++ software. ++ ++ -- Julian Taylor Thu, 09 May 2013 11:35:07 +0200 ++ ++python-scipy (0.11.0+dfsg1-1) experimental; urgency=low ++ ++ * New upstream release ++ * bump required cython to >= 0.17 ++ * refresh patches: ++ - drop upstream applied: ++ - interpnd-generator.patch ++ - dtype.diff, ++ - kolmogorov.diff, ++ - up_minpack_ints.diff ++ - kde.diff ++ - new patches for python3.3 compatibility and test fixing: ++ - BUG-remove-inline-statement-rejected-by-cython.patch ++ - BUG-fix-dependency-on-dict-ordering-in-test.patch ++ - fix-test_basic.py-cephes_vs_amos_mass_te.patch ++ - python3.3-incdir.diff ++ - fix-dbg-crash.patch ++ - fix-f2py-dependencies.patch ++ * add autopkgtests ++ * run fast tests during build ++ * update debian/copyright to dep5 ++ ++ -- Julian Taylor Fri, 25 Jan 2013 23:54:43 +0100 ++ ++python-scipy (0.10.1+dfsg2-1) unstable; urgency=low ++ ++ * add missing cython and swig sources from git tag (Closes: #589731) ++ * generate cython c files, requires python-mako and cython build depends ++ * ensure that all swig files are regenerated ++ * update debian/orig-tar.sh appropriately ++ * interpnd-generator.patch: fix the interpnd.pyx generation ++ ++ -- Julian Taylor Thu, 29 Nov 2012 21:56:31 +0100 ++ ++python-scipy (0.10.1+dfsg1-4) unstable; urgency=low ++ ++ [ Julian Taylor ] ++ * use dh_numpy3 ++ - build depend on python3-numpy >= 1:1.6.2~rc1-1~ ++ * debian/rules: remove reference to pyshared ++ ++ [ Varun Hiremath ] ++ * debian/patches: ++ - add dtype.diff (Closes: #682030) ++ - add up_minpack_ints.diff, thanks to Yaroslav Halchenko (Closes: #681270) ++ ++ -- Varun Hiremath Sat, 21 Jul 2012 17:23:02 -0400 ++ ++python-scipy (0.10.1+dfsg1-3) unstable; urgency=low ++ ++ * wrap-and-sort debian folder ++ * add python3 packages (Closes: #664785) ++ * debian/rules: ++ - split the build into build and install step ++ - use .install files instead of direct setup.py install ++ ++ -- Julian Taylor Fri, 20 Apr 2012 21:59:33 +0200 ++ ++python-scipy (0.10.1+dfsg1-2) unstable; urgency=low ++ ++ * debian/control: ++ - Recommends: python-imaging (Closes: #648036) ++ - Recommends: python-dev (Closes: #651760) ++ * debian/patches: ++ - Add kolmogorov.diff, thanks to Yaroslav Halchenko (Closes: #653948) ++ - Add kde.diff (Closes: #648034) ++ ++ -- Varun Hiremath Fri, 20 Apr 2012 02:37:28 -0400 ++ ++python-scipy (0.10.1+dfsg1-1) unstable; urgency=low ++ ++ * New upstream release (Closes: #653262) ++ * Update debian/orig-tar.sh script ++ * debian/patches ++ - updated restore_sys_argv.patch ++ - removed string_exception.patch, not needed ++ ++ -- Varun Hiremath Thu, 19 Apr 2012 16:14:28 -0400 ++ ++python-scipy (0.9.0+dfsg1-1) unstable; urgency=low ++ ++ * New upstream release (Closes: #614407, #579041, #569008) ++ * Convert to dh_python2 (Closes: #617028) ++ ++ -- Varun Hiremath Wed, 06 Apr 2011 21:26:25 -0400 ++ ++python-scipy (0.8.0+dfsg1-1) experimental; urgency=low ++ ++ [ Varun Hiremath ] ++ * New upstream release ++ * Build-Depend on python-numpy-* (>= 1:1.5.1) ++ * Update all the debian/patches/* ++ ++ [ Luca Falavigna ] ++ * Remove myself from Uploaders. ++ ++ [ Stefano Rivera ] ++ * debian/patches/blitz++.patch: Fix scipy.weave.inline compilations. Thanks ++ to Sameer Morar (Closes: #598520, LP: #302649) ++ ++ -- Varun Hiremath Fri, 24 Dec 2010 08:20:54 -0500 ++ ++python-scipy (0.7.2+dfsg1-1) unstable; urgency=low ++ ++ * Release with a new source tarball with missing cython source files ++ * debian/rules: Add get-orig-source target ++ * Add debian/README.source explaining the repackaging of source tarball ++ * Add debian/orig-tar.sh to add missing cython source files to the ++ source tarball (Closes: #589731) ++ * debian/rules: add call to dh_numpy to generate stricter versioned ++ depends on python-numpy (Closes: #590763) ++ * Bump Standards-Version to 3.9.1 ++ * Add myself to Uploaders ++ ++ -- Varun Hiremath Fri, 30 Jul 2010 18:29:18 -0400 ++ ++python-scipy (0.7.2-2) unstable; urgency=low ++ ++ * debian/patches/string_exceptions.patch: ++ - Do not use string exceptions, not supported by Python 2.6. ++ ++ -- Luca Falavigna Mon, 07 Jun 2010 14:52:40 +0200 ++ ++python-scipy (0.7.2-1) unstable; urgency=low ++ ++ * New upstream release. ++ * Switch to debhelper 7. ++ * Provide python-scipy-dbg package (Closes: #525329). ++ * Add myself to Uploaders. ++ ++ -- Luca Falavigna Sun, 25 Apr 2010 17:21:21 +0200 ++ ++python-scipy (0.7.1-1) unstable; urgency=low ++ ++ [ Sandro Tosi ] ++ * debian/control ++ - removed Marco Presi from uploaders: thanks for your work! ++ ++ [ Luca Falavigna ] ++ * New upstream release. ++ - Fix KeyError exception in sparse module (Closes: #525109). ++ - Fix SyntaxWarning exception with python2.6 (Closes: #567148). ++ * debian/patches/restore_sys_argv.patch: ++ - Restore sys.argv in case of exception (Closes: #500814). ++ * debian/control: ++ - Depend on ${misc:Depends}. ++ - Drop useless Conflicts/Replaces fields. ++ - Bump Standards-Version to 3.8.4, no changes required. ++ * debian/README.Debian: ++ - Remove obsolete information. ++ * debian/pycompat: ++ - Remove, useless. ++ ++ -- Debian Python Modules Team Mon, 05 Apr 2010 17:10:56 +0200 ++ ++python-scipy (0.7.0-2) unstable; urgency=medium ++ ++ [ Julien Lavergne ] ++ * debian/copyright : Update Copyright holders (Closes: #524131) ++ * From Ubuntu, prepare for the future python transition: ++ - debian/rules: ++ + Include /usr/share/python/python.mk ++ + Add $(py_setup_install_args) to setup.py install ++ + Replace site-packages by *-packages ++ - debian/control: ++ + Bump build-depends to python-all-dev (>= 2.5.4-1~) ++ ++ [ Luca Falavigna ] ++ * Remove patches, they are no longer needed and also causing FTBFS with ++ recent python-numpy. Remove quilt machinery too (Closes: #545606). ++ * debian/copyright: add missing copyright holder (Closes: #540504). ++ * debian/control: bump Standards-Version to 3.8.3, no changes required. ++ * debian/watch: fix regex to report correct upstream stable version. ++ ++ -- Debian Python Modules Team Tue, 15 Sep 2009 23:30:12 +0200 ++ ++python-scipy (0.7.0-1) unstable; urgency=low ++ ++ [ Ondrej Certik ] ++ * Beta version ++ * debian/patches: scipy_include_fix.diff and segfault.patch removed (applied ++ upstream), swig_ftbfs.dpatch and umfpack.dpatch updated to new paths ++ ++ [ Sandro Tosi ] ++ * debian/control ++ - switch Vcs-Browser field to viewsvn ++ ++ [ David Cournapeau ] ++ * New upstream version ++ * Remove obsolete dependencies on libfftw3-dev, libx11-dev and libnetcdf-dev ++ * Update version for numpy dependency: scipy requires version >= 1.2.0 ++ * Set ATLAS to None when building scipy to avoid depending on ATLAS API, and ++ only use BLAS/LAPACK public API, even when ATLAS is installed on the build ++ machine ++ ++ -- Ondrej Certik Sun, 08 Mar 2009 18:47:03 -0700 ++ ++python-scipy (0.6.0-12) unstable; urgency=low ++ ++ * The description updated to match the current SciPy (Closes: #489149). ++ * Standards-Version bumped to 3.8.0 (no action needed) ++ * Build-Depends: netcdf-dev changed to libnetcdf-dev ++ ++ -- Ondrej Certik Mon, 16 Jun 2008 22:58:01 +0200 ++ ++python-scipy (0.6.0-11.1) unstable; urgency=low ++ ++ * Non-maintainer upload. ++ * Change description to refer to python-numpy package instead of Numeric ++ to avoid confusion with python-numeric package. ++ ++ -- Chris AtLee Wed, 23 Apr 2008 15:45:22 -0400 ++ ++python-scipy (0.6.0-11) unstable; urgency=low ++ ++ * Fixes FTBFS, by unexporting LDFLAGS and setting FFLAGS directly, the same ++ hack as in numpy (Closes: #475990) ++ ++ -- Ondrej Certik Mon, 14 Apr 2008 14:53:57 +0200 ++ ++python-scipy (0.6.0-10) unstable; urgency=low ++ ++ [Sandro Tosi] ++ * Fixes a dangling symlink (Closes: #471825) ++ ++ -- Ondrej Certik Thu, 20 Mar 2008 14:50:31 +0100 ++ ++python-scipy (0.6.0-9) unstable; urgency=medium ++ ++ * Uses correct pycentral locations (Closes: #471549) ++ ++ -- Ondrej Certik Wed, 19 Mar 2008 21:41:12 +0100 ++ ++python-scipy (0.6.0-8) unstable; urgency=low ++ ++ * Build depend on libsuitesparse (>= 3.1.0-3) ++ * Build depends fixed to use gfortran based lapack and blas (Closes: #466868) ++ ++ -- Ondrej Certik Sat, 23 Feb 2008 01:21:51 +0100 ++ ++python-scipy (0.6.0-7) unstable; urgency=low ++ ++ * Bumped the version, because python-numpy conflicts with python-scipy (<= ++ 0.6.0-6). This compiles against the old suitesparse, but it makes the ++ package installable and working again. ++ ++ -- Ondrej Certik Thu, 21 Feb 2008 15:38:00 +0100 ++ ++python-scipy (0.6.0-6) UNRELEASED; urgency=low ++ ++ * debian/control ++ - uniforming both Vcs-Svn and Vcs-Browser fields ++ ++ -- Sandro Tosi Thu, 03 Jan 2008 12:18:46 +0100 ++ ++python-scipy (0.6.0-5.1) unstable; urgency=low ++ ++ * Non-maintainer upload. ++ * Changed `fftw3-dev' to `libfftw3-dev' to get rid of that dependency ++ on a virtual package. ++ * Fix FTBFS with relation to swig with a patch provided by ++ Kumar Appaiah (Closes: #456892) ++ ++ -- Philipp Kern Mon, 31 Dec 2007 13:45:10 +0100 ++ ++python-scipy (0.6.0-5) unstable; urgency=low ++ ++ * DM-Upload-Allowed changed to XS-DM-Upload-Allowed ++ * standards-version made uptodate (3.7.3) ++ * don't create an empty dir usr/share/doc/python-scipy/weave/ ++ ++ -- Ondrej Certik Tue, 04 Dec 2007 22:27:48 +0100 ++ ++python-scipy (0.6.0-4) unstable; urgency=low ++ ++ * Use quilt (much eaiser to use) instead of dpatch ++ * Paul's patch added (Closes: #452991) ++ * Add DM-Upload-Allowed: yes ++ ++ -- Ondrej Certik Mon, 03 Dec 2007 15:33:24 +0100 ++ ++python-scipy (0.6.0-3) unstable; urgency=low ++ ++ [ Piotr Ożarowski ] ++ * Rename XS-Vcs-* fields to Vcs-* (dpkg supports them now) ++ ++ [ Ondrej Certik ] ++ * Depending on libsuitesparse-dev directly instead of libufsparse-dev ++ (Closes: #445771) ++ ++ -- Ondrej Certik Mon, 15 Oct 2007 20:09:07 +0200 ++ ++python-scipy (0.6.0-2) unstable; urgency=medium ++ ++ * Replaced fftw-dev with fftw3-dev in Build-Depends (closes: #444124) ++ ++ -- Piotr Ożarowski Wed, 26 Sep 2007 23:52:25 +0200 ++ ++python-scipy (0.6.0-1) unstable; urgency=low ++ ++ [Ondřej Čertík] ++ * New upstream release ++ * watch file added ++ ++ [Piotr Ożarowski] ++ * Homepage field added ++ ++ -- Ondrej Certik Sun, 23 Sep 2007 16:14:35 +0200 ++ ++python-scipy (0.5.2.1-2) unstable; urgency=low ++ ++ * Got rid of all lintian and linda warnings (removed "SciPy is an open ++ source library of scientific tools for Python" (first sentence) from the ++ long description) ++ * debian/control: Added XS-Vcs-Svn and XS-Vcs-Browser fields to the Source ++ section ++ ++ -- Ondrej Certik Fri, 31 Aug 2007 04:29:55 +0200 ++ ++python-scipy (0.5.2.1-1) unstable; urgency=low ++ ++ * Adopting the package ++ * New upstream release (Closes: #426012) ++ * Removed unnecessary patches ++ * Removing LICENSE.txt, since it is unnecessary (and it fixes a lintian ++ warning) ++ ++ -- Ondrej Certik Tue, 28 Aug 2007 12:03:29 +0200 ++ ++python-scipy (0.5.2-9) experimental; urgency=low ++ ++ * Added Build-Dep on python-numpy (Closes: 422389) ++ * Made build independent of the python version (Closes: 414626) ++ * Added a new patch on sandbox/montecarlo to fix py2.5 compatibility ++ ++ -- Marco Presi (Zufus) Fri, 18 May 2007 11:12:31 +0100 ++ ++python-scipy (0.5.2-8) experimental; urgency=low ++ ++ * Fixed compatibility with numpy >= 1.0.2, by importing parts from upstream svn ++ ++ -- Marco Presi (Zufus) Sat, 21 Apr 2007 22:46:29 +0100 ++ ++python-scipy (0.5.2-7+b1) unstable; urgency=low ++ ++ * Binary-only non-maintainer upload for i386; no source changes. ++ * Rebuild to fix binaries built against experimental ++ ++ -- Debian/i386 Build Daemon Tue, 27 Feb 2007 02:01:45 -0600 ++ ++python-scipy (0.5.2-7) unstable; urgency=low ++ ++ * Added 'm86k' among the archs on which xplt should not build. ++ ++ -- Marco Presi (Zufus) Sat, 24 Feb 2007 13:40:42 +0000 ++ ++python-scipy (0.5.2-6) unstable; urgency=low ++ ++ * Merged patch for image viwer from upstream svn ++ ++ -- Marco Presi (Zufus) Sat, 24 Feb 2007 01:39:18 +0000 ++ ++python-scipy (0.5.2-5) experimental; urgency=low ++ ++ * Added a fix in sandbox/montecarlo tests that prevented installation ++ ++ -- Marco Presi (Zufus) Thu, 22 Feb 2007 01:33:18 +0000 ++ ++python-scipy (0.5.2-4) experimental; urgency=low ++ ++ * Incorporated code from setup_without_xplt.py into patches/sandbox.dpatch, in order to ++ build sandbox/xplt only on supported archs (Closes: #407869). ++ * Added libx11-dev among Build-Deps to support xplt. ++ ++ -- Marco Presi (Zufus) Thu, 22 Feb 2007 00:33:51 +0000 ++ ++python-scipy (0.5.2-3) experimental; urgency=low ++ ++ * Added netcdfg-dev Build-Deps (completed sandbox inclusion) ++ ++ -- Marco Presi (Zufus) Tue, 20 Feb 2007 23:28:43 +0000 ++ ++python-scipy (0.5.2-2) experimental; urgency=low ++ ++ * Enabled sandbox modules. To this aim randomkit.[ch] are included from ++ pyhon-numpy sources. See debian/patches/sandbox.dpatch ++ (Closes: #407869). ++ ++ -- Marco Presi (Zufus) Mon, 19 Feb 2007 19:26:22 +0000 ++ ++python-scipy (0.5.2-1) unstable; urgency=low ++ ++ * Fixed scipy.signal segfault (closes: #410757) ++ * Replaced hard-coded xv command with "see" (from mime-support). ++ Additionally, the environment variable SCIPY_PIL_IMAGE_VIEWER can be set. ++ (Closes: #395198) ++ ++ -- Marco Presi (Zufus) Sun, 18 Feb 2007 16:22:03 +0000 ++ ++python-scipy (0.5.2-0.1) unstable; urgency=medium ++ ++ * Remove build dependency on python-numpy-dev. ++ * python-scipy: Depend on python-numpy instead of python-numpy-dev. ++ * Package builds on other archs than i386. Closes: #402783. ++ ++ -- Matthias Klose Sun, 7 Jan 2007 14:12:12 +0100 ++ ++python-scipy (0.5.2-0) experimental; urgency=low ++ ++ * New upstream version (compatible with python-numpy-1.0.x). ++ * (Build-)depend on python-numpy (>= 1:1.0.1). ++ * Remove redundant (build-)dependencies. ++ * weave examples and docs are removed from the upstream tarball. ++ ++ -- Matthias Klose Wed, 3 Jan 2007 22:37:49 +0100 ++ ++python-scipy (0.5.1-3) unstable; urgency=low ++ ++ * Moved weave/examples into /usr/share/doc/python-scipy/ ++ and removed *.so files that prevented building on non x86 archs ++ (closes: #397241) ++ ++ -- Marco Presi (Zufus) Sat, 16 Sep 2006 18:46:56 +0200 ++ ++python-scipy (0.5.1-2) unstable; urgency=low ++ ++ * Added swig and libufsparse-dev among Build-deps ++ ++ -- Marco Presi (Zufus) Mon, 11 Sep 2006 22:05:45 +0200 ++ ++python-scipy (0.5.1-1) unstable; urgency=low ++ ++ * New upstream release ++ ++ -- Marco Presi (Zufus) Thu, 7 Sep 2006 00:32:07 +0200 ++ ++python-scipy (0.5.0-3) unstable; urgency=low ++ ++ * Re-compiled to reflect C-API changes in numpy. ++ ++ -- Marco Presi (Zufus) Fri, 18 Aug 2006 01:06:06 +0200 ++ ++python-scipy (0.5.0-2) unstable; urgency=low ++ ++ * Re-added fftw-dev among build-deps. ++ ++ -- Marco Presi (Zufus) Tue, 8 Aug 2006 17:34:44 -0400 ++ ++python-scipy (0.5.0-1) unstable; urgency=low ++ ++ * New upstream release ++ * Removed debian/patches/python2.3.dpatch now included in upstream release ++ ++ -- Marco Presi (Zufus) Sun, 30 Jul 2006 00:33:21 +0200 ++ ++python-scipy (0.4.9-2) unstable; urgency=low ++ ++ * Build against new release of python-numpy. ++ ++ -- José Fonseca Wed, 05 Jul 2006 18:06:41 +0100 ++ ++python-scipy (0.4.9-1) unstable; urgency=low ++ ++ * New upstream version. ++ ++ -- José Fonseca Tue, 04 Jul 2006 16:11:01 +0100 ++ ++python-scipy (0.3.2-9) unstable; urgency=low ++ ++ * Updated to new python policy (closes: #373352) ++ * Updated standards to 3.7.2 ++ ++ -- Alexandre Fayolle Thu, 15 Jun 2006 17:10:49 +0200 ++ ++python-scipy (0.3.2-8) unstable; urgency=low ++ ++ * Changed dependency on libwxgtk2.4-1-python to python-wxgtk2.4 (closes: #333795) ++ * Added cow progress bar fix by Glen W. Mabey (closes: #322796) ++ ++ -- Alexandre Fayolle Tue, 8 Nov 2005 11:56:51 +0100 ++ ++python-scipy (0.3.2-7) unstable; urgency=low ++ ++ * Depend on libwxgtk2.4-1-python due to new C++ ABI. ++ * Do not depend on obsolete blas-dev (Closes: #320441) ++ * Drop the python2.2 version due to python2.2-numeric removal. ++ * Applied Andreas Jochens' patch fixing gcc4.0 storage class ++ error (Closes: #302598) ++ ++ -- José Fonseca Sun, 31 Jul 2005 11:11:42 +0100 ++ ++python-scipy (0.3.2-6) unstable; urgency=low ++ ++ * Added a Suggests: python2.X-profiler in debian/control, made the ++ import of pstats optional by patching stats/__init__.py ++ (Closes: #296796) ++ ++ -- Alexandre Fayolle Fri, 11 Mar 2005 10:54:35 +0100 ++ ++python-scipy (0.3.2-5) unstable; urgency=low ++ ++ * Applied Adam Conrad's patch to allow build on m68k (Closes: #292919) ++ * Applied Andreas Jochens' patch fixing gcc4.0 incompatibility and ++ syntax error in debian/control (Closes: #288181) ++ ++ -- Alexandre Fayolle Thu, 17 Feb 2005 14:49:03 +0100 ++ ++python-scipy (0.3.2-4) unstable; urgency=low ++ ++ * Build for python 2.4. ++ ++ -- José Fonseca Mon, 24 Jan 2005 12:25:16 +0000 ++ ++python-scipy (0.3.2-3) unstable; urgency=low ++ ++ * fixed build dependencies on arm (Closes: #277897) ++ ++ -- Alexandre Fayolle Sat, 23 Oct 2004 11:28:51 +0200 ++ ++python-scipy (0.3.2-2) unstable; urgency=low ++ ++ * Updated package description ++ * removed scipy.xplt on hppa, s390, ia64, mips, mipsel (Closes: #277485) ++ * Added note about the missing module in README.Debian ++ ++ -- Alexandre Fayolle Fri, 22 Oct 2004 15:05:00 +0200 ++ ++python-scipy (0.3.2-1) unstable; urgency=low ++ ++ * New version. ++ ++ -- José Fonseca Mon, 18 Oct 2004 16:28:16 +0100 ++ ++python-scipy (0.3.0+266.4239-1) unstable; urgency=low ++ ++ * Updated to release. ++ * Recommends c++-compiler. ++ * Dropped python2.1 support. ++ * Official package (closes: #126037). ++ * Added Alexandre Fayolle and Marco Presi as uploaders ++ * Added missing build dependencies ++ ++ -- Alexandre Fayolle Mon, 13 Sep 2004 23:04:34 +0200 ++ ++python-scipy (0.2.0+cvs20031002-1) unstable; urgency=low ++ ++ * Moved scipy_core into a seperate package. ++ * Default to python-2.3. ++ ++ -- José Fonseca Thu, 02 Oct 2003 13:31:30 +0100 ++ ++python-scipy (0.2.0+alpha144.4350-1) unstable; urgency=low ++ ++ * Initial Release. ++ ++ -- José Fonseca Tue, 01 Jul 2003 13:35:03 +0100 diff --cc debian/control index 00000000,00000000..32c392a8 new file mode 100644 --- /dev/null +++ b/debian/control @@@ -1,0 -1,0 +1,103 @@@ ++Source: scipy ++Section: python ++Priority: optional ++Maintainer: Debian Python Team ++Uploaders: Ondrej Certik , ++ David Cournapeau , ++ Varun Hiremath ++Build-Depends: cython3 (>= 0.29.18), ++ debhelper-compat (= 13), ++ dh-python, ++ gfortran, ++ libblas-dev, ++ liblapack-dev, ++ liblbfgsb-dev, ++ libsuitesparse-dev (>= 3.1.0-3), ++ python3-all-dbg, ++ python3-all-dev, ++ python3-decorator, ++ python3-numpy (>= 1:1.14.5), ++ python3-numpy-dbg, ++ python3-pybind11 (>= 2.4.3), ++ python3-pytest, ++ python3-setuptools ++Build-Depends-Indep: dvipng, ++ python3-doc, ++ python3-docutils, ++ python3-matplotlib, ++ python3-numpydoc, ++ python3-sphinx (>= 2~), ++ rdfind, ++ symlinks, ++ texlive-latex-base, ++ texlive-latex-extra ++Standards-Version: 4.5.1 ++Homepage: http://www.scipy.org/ ++Vcs-Git: https://salsa.debian.org/python-team/packages/scipy.git ++Vcs-Browser: https://salsa.debian.org/python-team/packages/scipy ++ ++Package: python3-scipy ++Architecture: any ++Depends: python3-decorator, ++ python3-numpy (>= 1:1.7.2), ++ ${misc:Depends}, ++ ${python3:Depends}, ++ ${shlibs:Depends} ++Recommends: g++ | c++-compiler, python3-pil ++Suggests: python-scipy-doc ++Description: scientific tools for Python 3 ++ SciPy supplements the popular NumPy module (python-numpy package), gathering a ++ variety of high level science and engineering modules together as a single ++ package. ++ . ++ SciPy is a set of Open Source scientific and numeric tools for Python. It ++ currently supports special functions, integration, ordinary differential ++ equation (ODE) solvers, gradient optimization, genetic algorithms, parallel ++ programming tools, an expression-to-C++ compiler for fast execution, and ++ others. ++ ++Package: python3-scipy-dbg ++Section: debug ++Architecture: any ++Multi-Arch: same ++Depends: python3-dbg, ++ python3-numpy-dbg (>= 1:1.7.2), ++ python3-scipy (= ${binary:Version}), ++ ${misc:Depends}, ++ ${python3:Depends}, ++ ${shlibs:Depends} ++Description: scientific tools for Python 3 - debugging symbols ++ SciPy supplements the popular NumPy module (python-numpy package), gathering a ++ variety of high level science and engineering modules together as a single ++ package. ++ . ++ SciPy is a set of Open Source scientific and numeric tools for Python. It ++ currently supports special functions, integration, ordinary differential ++ equation (ODE) solvers, gradient optimization, genetic algorithms, parallel ++ programming tools, an expression-to-C++ compiler for fast execution, and ++ others. ++ . ++ This package provides debugging symbols for python3-scipy. ++ ++Package: python-scipy-doc ++Depends: fonts-open-sans, ++ libjs-jquery, ++ libjs-mathjax, ++ libjs-underscore, ++ ${misc:Depends}, ++ ${sphinxdoc:Depends} ++Section: doc ++Architecture: all ++Multi-Arch: foreign ++Description: scientific library for Python - documentation ++ SciPy supplements the popular NumPy module (python-numpy package), gathering a ++ variety of high level science and engineering modules together as a single ++ package. ++ . ++ SciPy is a set of Open Source scientific and numeric tools for Python. It ++ currently supports special functions, integration, ordinary differential ++ equation (ODE) solvers, gradient optimization, genetic algorithms, parallel ++ programming tools, an expression-to-C++ compiler for fast execution, and ++ others. ++ . ++ This package contains documentation for the SciPy library. diff --cc debian/copyright index 00000000,00000000..beeb2601 new file mode 100644 --- /dev/null +++ b/debian/copyright @@@ -1,0 -1,0 +1,405 @@@ ++Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ ++Upstream-Name: SciPy ++Source: http://www.scipy.org/ ++ ++Files: * ++Copyright: 2003-2019 SciPy Developers ++ 1999-2005 Travis Oliphant ++ 2001-2002 Enthought, Inc. ++ 2002 Eric Jones ++ 2002 Patrick J. Miller ++ 2002-2003 Jochen Kuepper ++ 2002-2004 Pearu Peterson ++ 2002-2005 Jean-Sebastien Roy ++ 2003-2005 Peter J. Verveer ++ 2003-2006 Ed Schofield ++ 2003-2012 SciPy Developers. ++ 2004 David M. Cooke ++ 2006 Bart Vandereycken ++ 2006 BasSw ++ 2006 Johannes Loehnert ++ 2007 Andrew D Straw ++ 2007 John Travers, Robert Hetland ++ 2007-2008 Damian Eads ++ 2008 Tiziano Zito ++ Gary Strangman ++ 2010 Pauli Virtanen ++ 2010, 2011 Pim Schellart ++ 2009 Yosef Meller ++License: BSD-3-clause ++Comment: the files in scipy/io/tests/data/*.sav are IDL formatted test data files ++ and can be read with the functions in scipy/io/idl.py ++ they contain a EULA notice which is likely invalid and ignored by debian, see ++ also https://lists.debian.org/debian-legal/2014/06/msg00001.html ++ ++Files: debian/patches/css_font_OpenSans.patch ++Copyright: 2010-2011, Google Corporation. ++License: Apache-2.0 ++Comment: ++ Adapted from https://fonts.googleapis.com/css?family=Open+Sans ++ ++Files: doc/scipy-sphinx-theme/_theme/scipy/static/less/* ++ doc/scipy-sphinx-theme/_theme/scipy/static/less/bootstrap/* ++ doc/scipy-sphinx-theme/_theme/scipy/static/img/glyphicons-* ++ doc/scipy-sphinx-theme/_theme/scipy/static/css/spc-bootstrap.css ++Copyright: Copyright 2012 Twitter, Inc ++License: Apache-2.0 ++Comment: Twitter Bootstrap v2.3.1 (and generated output CSS files) ++ ++Files: doc/scipy-sphinx-theme/_theme/scipy/static/copybutton.js ++Copyright: 2014 PSF (Python Software Foundation) ++License: PSF-2 ++Comment: File originates from the cpython source ++ found in Doc/tools/sphinxext/static/copybutton.js ++ ++Files: doc/source/_static/scipy-mathjax/* ++Copyright: 2009-2017 The MathJax Consortium ++License: Apache-2.0 ++ ++Files: doc/sphinxext/* doc/sphinxext/numpydoc/* ++Copyright: 2008 Stefan van der Walt , ++ Pauli Virtanen ++License: BSD-2-clause ++ ++Files: benchmarks/benchmarks/go_benchmark_functions/*.py ++Copyright: 2013 Andrea Gavana ++License: expat ++Comment: Functions for testing global optimizers, ++ forked from the AMPGO project, https://code.google.com/archive/p/ampgo ++ ++Files: scipy/fft/_pocketfft/pocketfft.cxx ++Copyright: 2010-2019 Max-Planck-Society, Martin Reinecke ++ 2019 Peter Bell ++License: BSD-3-clause ++ ++Files: scipy/fft/_pocketfft/pocketfft_hdronly.h ++Copyright: 2010-2019 Max-Planck-Society, Martin Reinecke ++ 2019 Peter Bell ++ 2003,2007-2014 Matteo Frigo, Massachusetts Institute of Technology ++License: BSD-3-clause ++ ++Files: scipy/linalg/src/id_dist/* ++Copyright: 2014, P.-G. Martinsson, V. Rokhlin, Y. Shkolnisky, M. Tygert ++License: BSD-3-clause ++ ++Files: scipy/misc/ascent.dat ++Copyright: public-domain ++License: public-domain ++ No permission whatsoever is needed to copy or use public domain works. Public ++ domain material is available for anyone to use for any purpose, private and ++ commercial. Public domain works can serve as the foundation for new creative ++ works. Public domain works can also be copied and distributed without any ++ permission or paying royalties ++ ++Files: scipy/ndimage/* ++Copyright: 2003-2005, Peter J. Verveer ++License: BSD-3-clause ++ ++Files: scipy/optimize/_highs/* ++Copyright: 2020 ERGO-Code ++License: Expat ++ ++Files: scipy/optimize/lbfgsb_src/*.f ++Copyright: 2011 Ciyou Zhu, Richard Byrd, and Jorge Nocedal ++License: BSD ++ The version included here (in lbfgsb.f) is 3.0 (released April 25, 2011). It was ++ written by Ciyou Zhu, Richard Byrd, and Jorge Nocedal . It ++ carries the following condition for use: ++ . ++ """ ++ This software is freely available, but we expect that all publications ++ describing work using this software, or all commercial products using it, ++ quote at least one of the references given below. This software is released ++ under the BSD License. ++ . ++ References ++ * R. H. Byrd, P. Lu and J. Nocedal. A Limited Memory Algorithm for Bound ++ Constrained Optimization, (1995), SIAM Journal on Scientific and ++ Statistical Computing, 16, 5, pp. 1190-1208. ++ * C. Zhu, R. H. Byrd and J. Nocedal. L-BFGS-B: Algorithm 778: L-BFGS-B, ++ FORTRAN routines for large scale bound constrained optimization (1997), ++ ACM Transactions on Mathematical Software, 23, 4, pp. 550 - 560. ++ * J.L. Morales and J. Nocedal. L-BFGS-B: Remark on Algorithm 778: L-BFGS-B, ++ FORTRAN routines for large scale bound constrained optimization (2011), ++ ACM Transactions on Mathematical Software, 38, 1. ++ """ ++ ++Files: scipy/optimize/lbfgsb_src/lbfgsb.pyf ++Copyright: 2004 David M. Cooke ++ 2012 Joonas Paalasmaa ++License: Expat ++ ++Files: scipy/sparse/csgraph/_matching.pyx ++Copyright: 1987, A. Volgenant/Amsterdam School of Economics, ++ University of Amsterdam ++License: BSD-3-clause ++ ++Files: scipy/sparse/linalg/dsolve/SuperLU/* ++Copyright: 2003, The Regents of the University of California, ++ through Lawrence Berkeley National Laboratory (subject to receipt ++ of any required approvals from U.S. Dept. of Energy) ++License: BSD-3-clause ++ ++Files: scipy/sparse/linalg/eigen/arpack/* ++Copyright: 1996-2008 Rice University, ++ 1996-2008 D.C. Sorensen, R.B. Lehoucq, C. Yang, and K. Maschhoff ++ 2001-2011 Scilab Enterprises, Allan Cornet, Sylvestre Ledru ++ 2007 - Sébastien Fabbro (gentoo patch) ++ 2010 - Jordi Gutiérrez Hermoso (Octave patch) ++License: BSD-3-clause ++ ++Files: scipy/spatial/qhull_src/* ++Copyright: 1993-2015, The Geometry Center (University of Minnesota) ++ 1993-2015, C.B. Barber ++License: qhullbsd ++ This software includes Qhull from C.B. Barber and The Geometry Center. ++ Qhull is copyrighted as noted above. Qhull is free software and may ++ be obtained via http from www.qhull.org. It may be freely copied, modified, ++ and redistributed under the following conditions: ++ . ++ 1. All copyright notices must remain intact in all files. ++ . ++ 2. A copy of this text file must be distributed along with any copies ++ of Qhull that you redistribute; this includes copies that you have ++ modified, or copies of programs or other software products that ++ include Qhull. ++ . ++ 3. If you modify Qhull, you must include a notice giving the ++ name of the person performing the modification, the date of ++ modification, and the reason for such modification. ++ . ++ 4. When distributing modified versions of Qhull, or other software ++ products that include Qhull, you must provide notice that the original ++ source code may be obtained as noted above. ++ . ++ 5. There is no warranty or other guarantee of fitness for Qhull, it is ++ provided solely "as is". Bug reports or fixes may be sent to ++ qhull_bug@qhull.org; the authors may or may not act on them as ++ they desire. ++ ++Files: scipy/special/cephes/* ++Copyright: 1984, 1987, 1989, 2000 Stephen L. Moshier ++License: BSD-3-clause ++ ++Files: scipy/special/cephes/dd_*.c scipy/special/cephes/dd_*.h ++Copyright: 2003-2009, The Regents of the University of California, ++ through Lawrence Berkeley National Laboratory (subject to receipt of ++ any required approvals from U.S. Dept. of Energy) ++License: BSD-LBNL ++Comment: This work was supported by the Director, Office of Science, Division ++ of Mathematical, Information, and Computational Sciences of the ++ U.S. Department of Energy under contract numbers DE-AC03-76SF00098 and ++ DE-AC02-05CH11231. ++ ++Files: scipy/special/Faddeeva.cc scipy/special/Faddeeva.hh ++Copyright: 2012 Massachusetts Institute of Technology ++License: Expat ++ ++Files: scipy/_lib/six.py ++Copyright: 2010-2012 Benjamin Peterson ++License: Expat ++ ++Files: scipy/_lib/uarray/* ++Copyright: 2018, Quansight-Labs ++License: BSD-3-clause ++ ++Files: scipy/_lib/decorator.py ++Copyright: 2005-2015 Michele Simionato ++License: bsdlike ++ All rights reserved. ++ . ++ Redistributions of source code must retain the above copyright ++ notice, this list of conditions and the following disclaimer. ++ Redistributions in bytecode form must reproduce the above copyright ++ notice, this list of conditions and the following disclaimer in ++ the documentation and/or other materials provided with the ++ distribution. ++ . ++ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ++ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT ++ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR ++ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT ++ HOLDERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, ++ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, ++ BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS ++ OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ++ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR ++ TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE ++ USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH ++ DAMAGE. ++ ++License: Apache-2.0 ++ Licensed under the Apache License, Version 2.0 (the "License"); you may not ++ use this file except in compliance with the License. You may obtain a copy ++ of the License at ++ . ++ http://www.apache.org/licenses/LICENSE-2.0 ++ . ++ Unless required by applicable law or agreed to in writing, software ++ distributed under the License is distributed on an "AS IS" BASIS, WITHOUT ++ WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the ++ License for the specific language governing permissions and limitations ++ under the License. ++ . ++ On Debian systems, the full text of the Apache License, Version 2.0 ++ can be found in the file ++ `/usr/share/common-licenses/Apache-2.0'. ++ ++License: BSD-2-clause ++ Redistribution and use in source and binary forms, with or without ++ modification, are permitted provided that the following conditions are ++ met: ++ . ++ 1. Redistributions of source code must retain the above copyright ++ notice, this list of conditions and the following disclaimer. ++ 2. Redistributions in binary form must reproduce the above copyright ++ notice, this list of conditions and the following disclaimer in ++ the documentation and/or other materials provided with the ++ distribution. ++ . ++ THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR ++ IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED ++ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE ++ DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, ++ INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES ++ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR ++ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) ++ HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, ++ STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING ++ IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE ++ POSSIBILITY OF SUCH DAMAGE. ++ ++License: BSD-3-clause ++ Redistribution and use in source and binary forms, with or without ++ modification, are permitted provided that the following conditions are met: ++ . ++ a. Redistributions of source code must retain the above copyright notice, ++ this list of conditions and the following disclaimer. ++ b. 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By copying, installing or otherwise using Python, Licensee ++ agrees to be bound by the terms and conditions of this License ++ Agreement. diff --cc debian/patches/Use-system-LBFGSB.patch index 00000000,00000000..248cf59a new file mode 100644 --- /dev/null +++ b/debian/patches/Use-system-LBFGSB.patch @@@ -1,0 -1,0 +1,38 @@@ ++From: Gard Spreemann ++Date: Tue, 2 Apr 2019 11:25:26 +0200 ++Subject: Use system LBFGSB. ++ ++--- ++ scipy/optimize/setup.py | 4 +++- ++ 1 file changed, 3 insertions(+), 1 deletion(-) ++ ++Index: scipy/scipy/optimize/setup.py ++=================================================================== ++--- scipy.orig/scipy/optimize/setup.py 2021-01-06 16:20:52.593854525 +1100 +++++ scipy/scipy/optimize/setup.py 2021-01-06 16:20:52.589854530 +1100 ++@@ -62,8 +62,10 @@ ++ pre_build_hook = None ++ ++ lapack = combine_dict(lapack, numpy_nodepr_api) +++ lapack.setdefault('libraries', []) +++ lapack['libraries'].append('lbfgsb') ++ ++- sources = ['lbfgsb.pyf', 'lbfgsb.f', 'linpack.f', 'timer.f'] +++ sources = ['lbfgsb.pyf'] ++ ext = config.add_extension('_lbfgsb', ++ sources=[join('lbfgsb_src', x) ++ for x in sources], ++Index: scipy/scipy/optimize/tests/test_optimize.py ++=================================================================== ++--- scipy.orig/scipy/optimize/tests/test_optimize.py 2021-01-06 16:20:52.593854525 +1100 +++++ scipy/scipy/optimize/tests/test_optimize.py 2021-01-06 16:20:52.589854530 +1100 ++@@ -867,7 +867,8 @@ ++ sol = optimize.minimize(optimize.rosen, np.array([-1.2, 1.0]), ++ method='L-BFGS-B', jac=optimize.rosen_der, ++ options={'disp': False, 'maxls': 1}) ++- assert_(not sol.success) +++ assert_(sol.success) +++ assert_allclose(sol.x,[1,1],rtol=1e-5) ++ ++ def test_minimize_l_bfgs_b_maxfun_interruption(self): ++ # gh-6162 diff --cc debian/patches/css_font_OpenSans.patch index 00000000,00000000..b51c0d10 new file mode 100644 --- /dev/null +++ b/debian/patches/css_font_OpenSans.patch @@@ -1,0 -1,0 +1,59 @@@ ++--- /dev/null +++++ b/doc/scipy-sphinx-theme/_theme/scipy/static/css/font_OpenSans.css ++@@ -0,0 +1,56 @@ +++/* cyrillic-ext */ +++@font-face { +++ font-family: 'Open Sans'; +++ font-style: normal; +++ font-weight: 400; +++ src: local('Open Sans Regular'), local('OpenSans-Regular'), url(file:///usr/share/fonts/truetype/open-sans/OpenSans-Regular.ttf) format('truetype'); +++ unicode-range: U+0460-052F, U+1C80-1C88, U+20B4, U+2DE0-2DFF, U+A640-A69F, U+FE2E-FE2F; +++} +++/* cyrillic */ +++@font-face { +++ font-family: 'Open Sans'; +++ font-style: normal; +++ font-weight: 400; +++ src: local('Open Sans Regular'), local('OpenSans-Regular'), url(file:///usr/share/fonts/truetype/open-sans/OpenSans-Regular.ttf) format('truetype'); +++ unicode-range: U+0400-045F, U+0490-0491, U+04B0-04B1, U+2116; +++} +++/* greek-ext */ +++@font-face { +++ font-family: 'Open Sans'; +++ font-style: normal; +++ font-weight: 400; +++ src: local('Open Sans Regular'), local('OpenSans-Regular'), url(file:///usr/share/fonts/truetype/open-sans/OpenSans-Regular.ttf) format('truetype'); +++ unicode-range: U+1F00-1FFF; +++} +++/* greek */ +++@font-face { +++ font-family: 'Open Sans'; +++ font-style: normal; +++ font-weight: 400; +++ src: local('Open Sans Regular'), local('OpenSans-Regular'), url(file://fonts.gstatic.com/s/opensans/v17/mem8YaGs126MiZpBA-UFVp0bbck.woff2) format('truetype'); +++ unicode-range: U+0370-03FF; +++} +++/* vietnamese */ +++@font-face { +++ font-family: 'Open Sans'; +++ font-style: normal; +++ font-weight: 400; +++ src: local('Open Sans Regular'), local('OpenSans-Regular'), url(file://fonts.gstatic.com/s/opensans/v17/mem8YaGs126MiZpBA-UFWp0bbck.woff2) format('truetype'); +++ unicode-range: U+0102-0103, U+0110-0111, U+1EA0-1EF9, U+20AB; +++} +++/* latin-ext */ +++@font-face { +++ font-family: 'Open Sans'; +++ font-style: normal; +++ font-weight: 400; +++ src: local('Open Sans Regular'), local('OpenSans-Regular'), url(file:///usr/share/fonts/truetype/open-sans/OpenSans-Regular.ttf) format('truetype'); +++ unicode-range: U+0100-024F, U+0259, U+1E00-1EFF, U+2020, U+20A0-20AB, U+20AD-20CF, U+2113, U+2C60-2C7F, U+A720-A7FF; +++} +++/* latin */ +++@font-face { +++ font-family: 'Open Sans'; +++ font-style: normal; +++ font-weight: 400; +++ src: local('Open Sans Regular'), local('OpenSans-Regular'), url(file:///usr/share/fonts/truetype/open-sans/OpenSans-Regular.ttf) format('truetype'); +++ unicode-range: U+0000-00FF, U+0131, U+0152-0153, U+02BB-02BC, U+02C6, U+02DA, U+02DC, U+2000-206F, U+2074, U+20AC, U+2122, U+2191, U+2193, U+2212, U+2215, U+FEFF, U+FFFD; +++} diff --cc debian/patches/css_font_local.patch index 00000000,00000000..a4b1946b new file mode 100644 --- /dev/null +++ b/debian/patches/css_font_local.patch @@@ -1,0 -1,0 +1,19 @@@ ++--- a/doc/scipy-sphinx-theme/_theme/scipy/static/css/spc-bootstrap.css +++++ b/doc/scipy-sphinx-theme/_theme/scipy/static/css/spc-bootstrap.css ++@@ -1,4 +1,4 @@ ++-@import url(https://fonts.googleapis.com/css?family=Open+Sans); +++@import 'font_OpenSans.css'; ++ /*! ++ * Bootstrap v2.3.1 ++ * ++--- a/doc/scipy-sphinx-theme/_theme/scipy/static/less/spc-bootstrap.less +++++ b/doc/scipy-sphinx-theme/_theme/scipy/static/less/spc-bootstrap.less ++@@ -3,7 +3,7 @@ ++ @import "bootstrap/responsive.less"; ++ ++ // google webfont ++-@import url(https://fonts.googleapis.com/css?family=Open+Sans); +++@import '../css/font_OpenSans.css'; ++ ++ //Typography ++ @sansFontFamily: 'Open Sans', sans-serif !important; diff --cc debian/patches/qhull-lfs.patch index 00000000,00000000..c6a852bb new file mode 100644 --- /dev/null +++ b/debian/patches/qhull-lfs.patch @@@ -1,0 -1,0 +1,26 @@@ ++From: Julian Taylor ++Date: Mon, 12 Oct 2015 15:17:23 -0700 ++Subject: enable large file support ++ ++ probably not needed as the file open api of qhull is not available in python ++Forwarded: no ++ ++Patch-Name: qhull-lfs.patch ++--- ++ scipy/spatial/setup.py | 3 +++ ++ 1 file changed, 3 insertions(+) ++ ++Index: scipy/scipy/spatial/setup.py ++=================================================================== ++--- scipy.orig/scipy/spatial/setup.py 2020-07-01 13:48:23.397732252 +0800 +++++ scipy/scipy/spatial/setup.py 2020-07-01 13:48:23.393732347 +0800 ++@@ -37,6 +37,9 @@ ++ config.add_extension('qhull', ++ sources=['qhull.c', 'qhull_misc.c'] + qhull_src, ++ **cfg) +++ cfg.setdefault('define_macros', []).append(('_FILE_OFFSET_BITS','64')) +++ cfg.setdefault('define_macros', []).append(('_LARGEFILE_SOURCE','1')) +++ cfg.setdefault('define_macros', []).append(('_LARGEFILE64_SOURCE','1')) ++ ++ # cKDTree ++ ckdtree_src = ['query.cxx', diff --cc debian/patches/series index 00000000,00000000..bc15073d new file mode 100644 --- /dev/null +++ b/debian/patches/series @@@ -1,0 -1,0 +1,5 @@@ ++use_local_mathjax.patch ++qhull-lfs.patch ++Use-system-LBFGSB.patch ++css_font_OpenSans.patch ++css_font_local.patch diff --cc debian/patches/use_local_mathjax.patch index 00000000,00000000..63750542 new file mode 100644 --- /dev/null +++ b/debian/patches/use_local_mathjax.patch @@@ -1,0 -1,0 +1,22 @@@ ++From: SVN-Git Migration ++Date: Mon, 12 Oct 2015 15:17:20 -0700 ++Subject: use_local_mathjax ++ ++Setting mathjax_path variable to use the local mathjax javascript library ++Patch-Name: use_local_mathjax.patch ++--- ++ doc/source/conf.py | 3 ++- ++ 1 file changed, 2 insertions(+), 1 deletion(-) ++ ++Index: scipy/doc/source/conf.py ++=================================================================== ++--- scipy.orig/doc/source/conf.py 2021-01-06 16:20:38.801872056 +1100 +++++ scipy/doc/source/conf.py 2021-01-06 16:20:38.797872061 +1100 ++@@ -211,6 +211,7 @@ ++ htmlhelp_basename = 'scipy' ++ ++ mathjax_path = "scipy-mathjax/MathJax.js?config=scipy-mathjax" +++mathjax_path='/usr/share/javascript/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML' ++ ++ ++ # ----------------------------------------------------------------------------- diff --cc debian/python-scipy-doc.doc-base index 00000000,00000000..0490e435 new file mode 100644 --- /dev/null +++ b/debian/python-scipy-doc.doc-base @@@ -1,0 -1,0 +1,14 @@@ ++Document: python-scipy-doc ++Title: SciPy Manual ++Author: The SciPy community ++Abstract: This guide is intended as an introductory overview of SciPy ++ and explains how to install and make use of the most important ++ features of SciPy. ++ There is also a tutorial and an API reference manual which details ++ functions, modules, and objects included in SciPy, describing what ++ they are and what they do. ++Section: Programming/Python ++ ++Format: HTML ++Index: /usr/share/doc/python-scipy-doc/html/index.html ++Files: /usr/share/doc/python-scipy-doc/html/* diff --cc debian/python-scipy-doc.docs index 00000000,00000000..8137b041 new file mode 100644 --- /dev/null +++ b/debian/python-scipy-doc.docs @@@ -1,0 -1,0 +1,1 @@@ ++doc/build/html diff --cc debian/python3-scipy-dbg.install index 00000000,00000000..20ba7d2a new file mode 100644 --- /dev/null +++ b/debian/python3-scipy-dbg.install @@@ -1,0 -1,0 +1,2 @@@ ++# extra stuff deleted in rules ++usr/lib/python3*/*-packages/ diff --cc debian/python3-scipy.install index 00000000,00000000..eb5441e5 new file mode 100644 --- /dev/null +++ b/debian/python3-scipy.install @@@ -1,0 -1,0 +1,1 @@@ ++usr/lib/python3*/dist-packages diff --cc debian/rules index 00000000,00000000..620f17e5 new file mode 100755 --- /dev/null +++ b/debian/rules @@@ -1,0 -1,0 +1,113 @@@ ++#!/usr/bin/make -f ++ ++export PYBUILD_NAME=scipy ++ ++include /usr/share/dpkg/architecture.mk ++ ++unexport LDFLAGS ++export FFLAGS="-fPIC" ++export ATLAS=None ++export PATH := $(CURDIR)/debian/extra_bin:$(PATH) ++ ++PY3VERS:= $(shell py3versions -v -r debian/control) ++PY3_DEFAULT:= $(shell py3versions -d) ++TMPDIR := $(CURDIR)/build/tmp ++BASE=$(shell pwd)/debian ++ ++ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) ++ export NPY_NUM_BUILD_JOBS = $(patsubst parallel=%,%,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) ++endif ++ ++%: ++ dh $@ --with python3 --buildsystem=pybuild ++ ++override_dh_auto_clean: ++ rm -rf build ++ -rm -rf doc/source/fontList.cache ++ -rm -rf doc/build ++ -rm -rf debian/extra_bin ++ find . -name "*.pyc" -exec rm {} \; ++ dh_clean ++ ++override_dh_auto_configure: ++ rm -f cythonize.dat ++ touch scipy/linalg/_generate_pyx.py scipy/special/_generate_pyx.py ++ python3 tools/cythonize.py ++ ++build-python%: ++ pybuild -p$* --configure --configure-args "config_fc --noarch build" ++ CFLAGS="-g -ggdb" \ ++ pybuild -p$* -ipython$*-dbg --configure --configure-args "config_fc --noarch build" ++ ++override_dh_auto_build-arch: $(PY3VERS:%=build-python%) ++ ++override_dh_auto_build-indep: build-$(PY3_DEFAULT) ++ # generate documentation (see comment below) needs compiled scipy ++ (export MPLCONFIGDIR=. ; \ ++ PYLIBPATH=`pybuild --print build_dir | grep $(PY3_DEFAULT) | awk '{print $$3}'`; \ ++ echo "building docs using PYLIBPATH=$$PYLIBPATH"; \ ++ PYTHONPATH=$$PYLIBPATH make -C doc html PYTHONPATH=$$PYLIBPATH PYVER=3) ++ ++override_dh_auto_test: ++ echo "Build-time tests will be run after the installation dir is installed" ++ ++override_dh_auto_install: ++ dh_auto_install -a -- --install-args "--root $(BASE)/tmp --force --no-compile --install-layout=deb"; ++ ++override_dh_install-arch: ++ dh_install ++ find debian/python3-scipy -type f -name '*.cpython-3?d*.so' -delete ++ find debian/python3-scipy-dbg ! -type d ! -name '*.cpython-3?d*.so' -delete ++ find debian/python3-scipy-dbg -depth -empty -exec rmdir {} \; ++ rm -fr $(BASE)/python-scipy*/usr/lib/python*/*-packages/scipy/weave/examples/ ++ ++ # drop all the installed setup.py files ++ find $(BASE)/ -name setup.py -delete ++ find $(BASE)/ -name generate_ufuncs.py -delete ++ ++ set -e && for py in $(PY3VERS); do \ ++ ln -sf /usr/lib/python3/dist-packages/decorator.py $(BASE)/python3-scipy/usr/lib/python$$py/dist-packages/scipy/_lib/decorator.py; \ ++ done ++ ++ # not ported to py3 in 0.10.1 ++ rm -rf $(BASE)/python3-scipy/usr/lib/python3/dist-packages/scipy/weave ++ ++ dh_numpy3 ++ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) ++ mkdir -p $(TMPDIR) ++ -set -e && for pyvers in $(PY3VERS); do \ ++ AUTOPKGTEST_TMP=$(TMPDIR) \ ++ PYTHONPATH=$(BASE)/python3-scipy/usr/lib/python$$pyvers/dist-packages/ \ ++ PYS=python$$pyvers TESTMODE=fast $(BASE)/tests/python3; \ ++ done ++endif ++ ++override_dh_fixperms-arch: ++ dh_fixperms ++ set -e; for i in `find debian -mindepth 2 -type f ! -perm 755`; do \ ++ if head -1 $$i | grep -q '^#!' ; then \ ++ chmod +x $$i; \ ++ fi ; \ ++ done ++ chmod a-x debian/python3-scipy/usr/lib/python3/dist-packages/scipy/optimize/_shgo_lib/sobol_vec.gz ++ sed -i '1s|.|#!/usr/bin/python3\n&|' $(BASE)/python3-scipy/usr/lib/python3/dist-packages/scipy/cluster/tests/test_vq.py ++ sed -i '1s|.|#!/usr/bin/python3\n&|' $(BASE)/python3-scipy/usr/lib/python3/dist-packages/scipy/stats/tests/test_stats.py ++ #replace all the usr/bin/env python ++ find $(BASE)/python3-scipy/usr/lib/python3/ -name "*.py" -type f | xargs sed -i -e "1s#usr/bin/env\s\+python\s*\$$#usr/bin/env python3#" ++ ++override_dh_strip: ++ dh_strip -ppython3-scipy --dbg-package=python3-scipy-dbg ++ ++override_dh_installdocs-indep: ++ dh_installdocs -i ++ ++ rm -rf debian/python-scipy-doc/usr/share/doc/python-scipy-doc/html/_static/jquery.js ++ dh_link -ppython-scipy-doc /usr/share/javascript/jquery/jquery.js /usr/share/doc/python-scipy-doc/html/_static/jquery.js ++ ++ rm -rf debian/python-scipy-doc/usr/share/doc/python-scipy-doc/html/_static/underscore.js ++ dh_link -ppython-scipy-doc /usr/share/javascript/underscore/underscore.js /usr/share/doc/python-scipy-doc/html/_static/underscore.js ++ ++ dh_sphinxdoc -i -XMathJax.js ++ find debian/python-scipy-doc/ -name scipy-mathjax | xargs rm -rf ++ rdfind -outputname /dev/null -makesymlinks true -removeidentinode false debian/python-scipy-doc ++ symlinks -r -s -c debian/python-scipy-doc diff --cc debian/source/format index 00000000,00000000..163aaf8d new file mode 100644 --- /dev/null +++ b/debian/source/format @@@ -1,0 -1,0 +1,1 @@@ ++3.0 (quilt) diff --cc debian/tests/atlas index 00000000,00000000..6d65db32 new file mode 120000 --- /dev/null +++ b/debian/tests/atlas @@@ -1,0 -1,0 +1,1 @@@ ++openblas diff --cc debian/tests/blis index 00000000,00000000..6d65db32 new file mode 120000 --- /dev/null +++ b/debian/tests/blis @@@ -1,0 -1,0 +1,1 @@@ ++openblas diff --cc debian/tests/control index 00000000,00000000..89f39b8d new file mode 100644 --- /dev/null +++ b/debian/tests/control @@@ -1,0 -1,0 +1,21 @@@ ++Tests: python3 ++Depends: build-essential, python3-scipy, python3-pytest, python3-all, python3-all-dev, python3-pil ++ ++# short test on all python versions including debug ++Tests: python3-smoke ++Depends: python3-scipy, python3-scipy-dbg, python3-pytest, python3-all, python3-all-dbg ++ ++#needs root for update-alternatives, build-essential for libc6-dev (ctype libm.so) ++Tests: openblas ++Restrictions: needs-root ++Depends: build-essential, python3-scipy, python3-pytest, python3, libopenblas0 ++ ++#needs root for update-alternatives, build-essential for libc6-dev (ctype libm.so) ++Tests: atlas ++Restrictions: needs-root ++Depends: build-essential, python3-scipy, python3-pytest, python3, libatlas3-base ++ ++#needs root for update-alternatives, build-essential for libc6-dev (ctype libm.so) ++Tests: blis ++Restrictions: needs-root ++Depends: build-essential, python3-scipy, python3-pytest, python3, libblis3 diff --cc debian/tests/openblas index 00000000,00000000..a2dc3820 new file mode 100755 --- /dev/null +++ b/debian/tests/openblas @@@ -1,0 -1,0 +1,21 @@@ ++#!/bin/sh ++set -efu ++ma=$(dpkg-architecture -qDEB_HOST_MULTIARCH) ++blaslib=$(update-alternatives --list libblas.so.3-$ma | grep $(basename $0)) ++update-alternatives --set libblas.so.3-$ma $blaslib ++ ++echo "=== testing "$(basename $0)" ===" ++ ++# one python is enough ++PYS=${PYS:-"$(py3versions -d 2>/dev/null)"} ++ ++#test only modules that link against libblas ++PYS=$PYS TESTPKG=scipy.odr debian/tests/python3 ++PYS=$PYS TESTPKG=scipy.optimize debian/tests/python3 ++PYS=$PYS TESTPKG=scipy.spatial debian/tests/python3 ++PYS=$PYS TESTPKG=scipy.special debian/tests/python3 ++PYS=$PYS TESTPKG=scipy.cluster debian/tests/python3 ++PYS=$PYS TESTPKG=scipy.integrate debian/tests/python3 ++PYS=$PYS TESTPKG=scipy.interpolate debian/tests/python3 ++PYS=$PYS TESTPKG=scipy.sparse debian/tests/python3 ++PYS=$PYS TESTPKG=scipy.linalg debian/tests/python3 diff --cc debian/tests/python3 index 00000000,00000000..a8d2033e new file mode 100755 --- /dev/null +++ b/debian/tests/python3 @@@ -1,0 -1,0 +1,74 @@@ ++#!/bin/sh ++set -efu ++ ++PYS=${PYS:-"$(py3versions -r 2>/dev/null)"} ++TESTMODE=${TESTMODE:-full} ++TESTPKG=${TESTPKG:-scipy} ++export HOME=$AUTOPKGTEST_TMP ++export TMPDIR=$AUTOPKGTEST_TMP ++ ++if [ ${TESTPKG} = "scipy.sparse" ]; then ++ SPARSE=""; ++else ++ SPARSE="sparse."; ++fi ++ ++if [ ${TESTPKG} = "scipy.spatial" ]; then ++ SPATIAL=""; ++else ++ SPATIAL="spatial."; ++fi ++ ++cd "$AUTOPKGTEST_TMP" ++#nosetest does not handle knowfailures ++cat << EOF > runtest.py ++import $TESTPKG ++# add failures to skip here ++skip = [ ++# i386 failures ++"special.tests.test_mpmath.TestSystematic.test_pcfw", ++"special.tests.test_orthogonal.test_roots_jacobi", ++"linalg.tests.test_solvers.test_solve_generalized_discrete_are", ++# fails with atlas ++"linalg.tests.test_solvers.test_solve_discrete_are", ++# postscriptum on Bug#919929 ++"${SPARSE}tests.test_sparsetools.TestInt32Overflow.test_matvecs", ++"${SPARSE}tests.test_sparsetools.TestInt32Overflow.test_dia_matvec", ++"${SPARSE}tests.test_sparsetools.TestInt32Overflow.test_bsr_1_block", ++"${SPARSE}tests.test_sparsetools.TestInt32Overflow.test_bsr_n_block", ++# a new, unresolved bug in matplotlib, see https://github.com/scipy/scipy/issues/9946 ++"${SPATIAL}tests.test__plotutils.TestPlotting.test_delaunay", ++"${SPATIAL}tests.test__plotutils.TestPlotting.test_voronoi", ++"${SPATIAL}tests.test__plotutils.TestPlotting.test_convex_hull" ++] ++ ++junit = "$TMPDIR/junit.xml" ++r= $TESTPKG.test(label='$TESTMODE', verbose=2, extra_argv=["--junit-xml=" + junit]) ++import xml.etree.ElementTree as ET ++ET.parse(junit) ++tree =ET.parse(junit) ++root = tree.getroot() ++errors = [] ++for testcase in root: ++ for result in testcase: ++ if result.tag in ("failure", "error"): ++ testid = testcase.attrib["classname"].split("scipy.")[-1] + "." + testcase.attrib["name"] ++ print("skipped:", testid) ++ if testid in skip: ++ del skip[skip.index(testid)] ++ else: ++ print("failed:", testid) ++ errors.append(testid) ++ ++print("#errors: %d" % len(errors)) ++for s in skip: ++ print("unused skips:", s) ++assert len(errors) == 0 ++EOF ++ ++ ++for py in $PYS; do ++ echo "=== Testing: $py $TESTPKG ===" ++ $py runtest.py 2>&1 ++ echo "=== Done: $py $TESTPKG ===" ++done diff --cc debian/tests/python3-smoke index 00000000,00000000..300e08fc new file mode 100755 --- /dev/null +++ b/debian/tests/python3-smoke @@@ -1,0 -1,0 +1,19 @@@ ++#!/bin/sh ++set -efu ++echo "=== testing "$(basename $0)" ===" ++ ++PYS=${PYS:-"$(py3versions -r 2>/dev/null)"} ++TESTMODE=${TESTMODE:-full} ++TESTPKG=${TESTPKG:-scipy} ++export HOME=$AUTOPKGTEST_TMP ++export TMPDIR=$AUTOPKGTEST_TMP ++ ++cd "$AUTOPKGTEST_TMP" ++ ++# test imports and a fast test ++for py in $PYS; do ++ echo "=== Testing: $py $TESTPKG ===" ++ $py -c "import scipy.interpolate, scipy.stats, scipy.ndimage; scipy.interpolate.test()" 2>&1 ++ ${py}-dbg -c "import scipy.interpolate, scipy.stats, scipy.ndimage; scipy.interpolate.test()" 2>&1 ++ echo "=== Done: $py $TESTPKG ===" ++done diff --cc debian/watch index 00000000,00000000..1620bd6c new file mode 100644 --- /dev/null +++ b/debian/watch @@@ -1,0 -1,0 +1,3 @@@ ++version=3 ++opts=uversionmangle=s/(\d)[_\.\-\+]?((RC|rc|pre|dev|beta|alpha|b|a)[\-\.]?\d*)$/$1~$2/ \ ++https://github.com/scipy/scipy/releases (?:.*?/)?scipy-v?(\d[\d.]*)\.tar\.xz