From: Andreas Tille <tille@debian.org>
Date: Tue, 21 Jul 2015 09:30:39 +0000 (+0200)
Subject: Provide file tests/ex1.bam that is required in nosetest
X-Git-Tag: archive/raspbian/0.22.0+ds-1+rpi1~1^2^2~293
X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=8d933591b2c530612f84c1575289a0a9dfa3d597;p=python-pysam.git

Provide file tests/ex1.bam that is required in nosetest
---

diff --git a/debian/rules b/debian/rules
index 4315e30..41caf79 100755
--- a/debian/rules
+++ b/debian/rules
@@ -22,18 +22,24 @@ override_dh_auto_clean:
 	find . -name "tmp_*" -delete
 	find . -name "*.bai*" -delete
 	find . -name "*.cram*" -delete
+	find . -name "*.bam" -delete
 	rm -rf	tests/pysam_test_work \
 		tests/example_htslib.gtf.gz.tbi \
 		tests/log.txt \
 		tests/test.bam \
 		tests/_compile_test.c \
+		tests/pysam_ex2.sam \
 		pysam/calignmentfile.c \
 		pysam/cbcf.c
 
 override_dh_auto_test:
+	# Tests are stumbling upon missing ex1.bam file ...
+	ln -s pysam_data/ex1.bam tests
 	PYBUILD_SYSTEM=custom \
 	PYBUILD_TEST_ARGS="cd tests && make -C pysam_data && if [ {version} = 2.7 ] ; then echo ""This should be 2.7 / python2.7: {version} / {interpreter}"" ; nosetests -s -v ; else echo ""This should be 3 / python3.4: {version} / {interpreter}"" ; nosetests3 -s -v ; fi" dh_auto_test || \
 		echo "Ignoring test failures"
+	# remove ex1.bam that was created above
+	rm -f tests/ex1.bam
 
 get-orig-source:
 	uscan --verbose --force-download --repack --compression xz