From: Drew Parsons Date: Thu, 8 Sep 2022 14:01:54 +0000 (+0100) Subject: scipy (1.8.1-14) unstable; urgency=medium X-Git-Tag: archive/raspbian/1.8.1-20+rpi1~1^2~8 X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=732a6ffa8eb91628cd493cd7321be4a3ac786826;p=scipy.git scipy (1.8.1-14) unstable; urgency=medium * Team upload. * debian/tests: skip all test_complex* tests on i386 with blis * once again drop pythran support on armhf. Still causes many packages to fail tests even after revised version of PR16646 (possibly due to memory exhaustion?) [dgit import unpatched scipy 1.8.1-14] --- 732a6ffa8eb91628cd493cd7321be4a3ac786826 diff --cc debian/changelog index 00000000,00000000..e9b36f22 new file mode 100644 --- /dev/null +++ b/debian/changelog @@@ -1,0 -1,0 +1,1517 @@@ ++scipy (1.8.1-14) unstable; urgency=medium ++ ++ * Team upload. ++ * debian/tests: skip all test_complex* tests on i386 with blis ++ * once again drop pythran support on armhf. ++ Still causes many packages to fail tests even after revised ++ version of PR16646 (possibly due to memory exhaustion?) ++ ++ -- Drew Parsons Thu, 08 Sep 2022 16:01:54 +0200 ++ ++scipy (1.8.1-13) unstable; urgency=medium ++ ++ * Team upload. ++ * skip build-time tests ++ - armel: test_random_exact in linalg/tests/test_basic.py (segfaults) ++ * update debian patch pythran_type_PR16646.patch to latest PR16646 ++ ++ -- Drew Parsons Wed, 07 Sep 2022 09:53:04 +0200 ++ ++scipy (1.8.1-12) unstable; urgency=medium ++ ++ * Team upload. ++ * skip build-time tests ++ - armel: linalg/tests/test_decomp.py (started segfaulting) ++ - hppa: test_nodata test_cont_basic[500-200-semicircular-arg89] ++ - riscv64: test_vector test_iterative_refinements_dense (segfaults) ++ * skip more tests in debian/test ++ - i386 with blis: test_complex_dotc (segfaults) ++ - armhf with openblas: test_solver_selection ++ - ppc64el with atlas: sparse test_svd_v0, test_svd_random_state{_2} ++ * update debian patch pythran_type_PR16646.patch to latest PR16646 ++ - reinstate TestMLS tests ++ - reinstate pythran on armhf to test if PR16646 now fixes problems ++ - Closes: #1017862 ++ ++ -- Drew Parsons Tue, 30 Aug 2022 20:12:18 +0200 ++ ++scipy (1.8.1-11) unstable; urgency=medium ++ ++ * Team upload. ++ * skip more tests in debian/tests ++ - arm64: test_atol[cgs] with blis ++ - armel: skip linalg test_aligned_mem in test_decomp.py ++ - armhf with openblas: some optimize tests in TestRRSVD, TestDogbox ++ - i386 with blis: test_complex_dotu ++ - ppc64el: test_svds_parameter_tol, test_bug_6139 (with atlas) ++ - s390x with atlas: test_bug_6139, test_solver_select ++ - riscv64: avoid failures and segfaults ++ * skip tests failing on powerpc in stats/tests/test_stats.py: ++ overflow encountered in _hypergeom_*. Skip test_hypergeom_cdf, ++ test_hypergeom_sf, test_nch_hypergeom, test_precision, ++ test_precise, test_less_greater ++ * debian/tests: restrict openblas tests to supported architectures ++ only (i.e. not armel) ++ ++ -- Drew Parsons Fri, 26 Aug 2022 00:29:59 +0200 ++ ++scipy (1.8.1-10) unstable; urgency=medium ++ ++ * Team upload. ++ * skip TestSmirnovp (test_kolmogorov) also on hurd-i386 ++ * skip test_first_step and test_classes on mips64el ++ (integrate/_ivp/tests/test_ivp.py) ++ See https://github.com/scipy/scipy/issues/16883 ++ * skip test_large_rank_deficient on armhf with blis. Segfaults in ++ test_lsq_linear.py::TestBVLS ++ * once again drop pythran support on armhf. ++ It does work successfully, but shifts numerical results enough to ++ break tests on a dozen packages (astropy, pandas, pyfai, skimage etc) ++ ++ -- Drew Parsons Wed, 24 Aug 2022 11:43:19 +0200 ++ ++scipy (1.8.1-9) unstable; urgency=medium ++ ++ * Team upload. ++ * drop asyncio_mode=auto from debian patch manage_tests.patch. ++ Only relevant when python3-pytest-asyncio is installed ++ (causes errors if not installed, but scipy doesn't need it) ++ * use runtests.py to manage build-time tests ++ * skip failing tests ++ - signal TestMLS fails due to broken pythran support on 32 bit ++ arches. See Bug#1017862. ++ - special test_kolmogorov.py (TestSmirnovp) segfaults on i386. ++ Closes: Bug#1017864. ++ - stats test_cont_basic[500-200-ncf-arg74] fails with ++ IntegrationWarning. See upstream Issue 14519 ++ * update debian/watch (uscan) for latest github format ++ ++ -- Drew Parsons Mon, 22 Aug 2022 17:24:17 +0200 ++ ++scipy (1.8.1-8) unstable; urgency=medium ++ ++ * Team upload. ++ * overhaul debian/tests to run debci tests using upstream's ++ runtests.py. Previous approach was overcomplicated and unable to ++ skip test_hermitian_modes for blis on i386. Keep specific skips for ++ BLAS tests but drop general tests previously skipped in order to ++ verify if they still need skipping. ++ * debian patch pythran_type_PR16646.patch applies upstream PR#16646 ++ to properly define pythran types for 32 bit arches. ++ - reinstate pythran support on armhf ++ * fix determination of python3 versions in debian/rules ++ ++ -- Drew Parsons Mon, 25 Jul 2022 00:20:58 +0200 ++ ++scipy (1.8.1-7) unstable; urgency=medium ++ ++ * Team upload. ++ * drop pythran completely from armhf. Still causes errors from built ++ components even if pythran is not installed at runtime. ++ cf. https://github.com/serge-sans-paille/pythran/issues/2002 ++ * reorganise test skip list in debian/tests to ensure i386 properly ++ skips test_hermitian_modes ++ ++ -- Drew Parsons Mon, 18 Jul 2022 13:36:40 +0200 ++ ++scipy (1.8.1-6) unstable; urgency=medium ++ ++ * Team upload. ++ * on armhf, demote python3-scipy Depends: pythran to Suggests. ++ Causes armhf debci test failure on dozens of dependent packages, ++ mainly with MemoryError. Only individual tests fail, probably ++ depends on the specific usage. ++ ++ -- Drew Parsons Thu, 30 Jun 2022 22:14:11 +0200 ++ ++scipy (1.8.1-5) unstable; urgency=medium ++ ++ * Team upload. ++ * debian/tests: skip more blas-specific tests ++ - armhf/openblas: test_large_rank_deficient and all TestTRF ++ (in optimize/tests/test_lsq_linear.py; times out or segfaults) ++ - armhf/openblas: test_disp in optimize/tests/test_linprog.py ++ (times out) ++ - armhf/atlas: test_aligned_mem in linalg/tests/test_decomp.py ++ (illegal value for DHSEQR parameter) ++ - fix i386 skip of test_hermitian_modes (_eigen not eigen) ++ * update debian patch manage_tests.patch ++ - alpha: special test_round.py skip all ++ * Depends: python3-pythran on all arches. Even arches without full ++ SIMD support should benefit from the dynamic C++ compilation. ++ cf. https://github.com/scipy/scipy/issues/13308#issuecomment-1168579164 ++ Closes: #1013568. ++ ++ -- Drew Parsons Wed, 29 Jun 2022 01:17:22 +0200 ++ ++scipy (1.8.1-4) unstable; urgency=medium ++ ++ * Team upload. ++ * update debian patch manage_tests.patch ++ - add asyncio_mode=auto to pytest.ini. Required in order to launch ++ tests from toplevel source directory. ++ - hppa (parisc64): io/arff test_arffread.py ++ skip TestNoData ++ - hppa (parisc64): special test_round.py skip all ++ - hurd: platform.machine() is 'i686-AT386', so use ++ machine.startswith('i686') instead of machine=='i686' ++ to skip tests for both i386 (linux) and hurd-i386 ++ * return an exit code from scipy.test() otherwise 0 is always ++ returned so test failure is not detected ++ * disable pythran support on i386 because of test errors ++ "TypeError: Invalid call to pythranized function" ++ cf. https://github.com/serge-sans-paille/pythran/issues/1025 ++ Revisit once pythran 0.11.0 is packaged. ++ * debian/tests: skip test_hermitian_modes with BLIS on i386 ++ (in sparse/linalg/eigen/arpack/arpack.py). Closes: Bug#1003880. ++ * in BLAS tests, only use first alternative for BLAS implementation ++ ++ -- Drew Parsons Wed, 15 Jun 2022 18:35:03 +0200 ++ ++scipy (1.8.1-3) unstable; urgency=medium ++ ++ * Team upload. ++ * debian/tests specific blas tests Depend on -dev versions of blas ++ packages in order to not hardcode ABI versions ++ (blis recently bumped to libblis.so.4) ++ * update debian patch manage_tests.patch: ++ - mips64el: fft test_fftlog.py skip test_fht_special_cases ++ - mips64el: sparse/csgraph test_shortest_path.py ++ skip test_NaN_warnings ++ - mips64el: stats test_distributions.py skip test_moments_warnings ++ - on i386 platform.machine() is 'i686' not 'i386' ++ - on armel and armhf platform.machine() is "armv7l' not simply 'arm' ++ Use startswith('arm') not =='arm' to allow the general case. ++ - on powerpc platform.machine() is "ppc" ++ * reinstate handling of nocheck in DEB_BUILD_OPTIONS to run tests ++ * run tests with set -e to ensure errors are not ignored. ++ Closes: #1003417. ++ * debian patch build_sh4_FE.patch ensures FE_UPWARD and FE_DOWNWARD ++ are defined for sh4 architecture. Closes: #1007769. ++ * add pythran support for i386 ++ ++ -- Drew Parsons Tue, 14 Jun 2022 16:11:24 +0200 ++ ++scipy (1.8.1-2) experimental; urgency=medium ++ ++ * Team upload. ++ * rename debian patch skip_tests.patch to manage_tests.patch and ++ update to increase test successes ++ - all: linalg test_lapack.py test_sygst ++ raise tol from 1e-4 to 2e-4 ++ - armel, powerpc: stats test_stats skip various tests ++ - armel: special test_round.py skip all ++ - armel: optimize test_linprog.py skip test_bounds_infeasible_2 ++ - armel: interpolate test_fitpack.py skip test_kink ++ - armhf: linalg test_interpolative.py ++ skip test_estimate_spectral_norm_diff ++ - i386: relax tolerance in spatial/transform test_rotation.py ++ and spatial test_distance.pytest_pdist_jensenshannon_iris ++ - i386: sparse/linalg/_isolve test_iterative.py skip ++ test_maxiter_worsening ++ - i386: signal test_spectral.py skip test_nd_axis_m1, ++ test_nd_axis_0 ++ - s390x, powerpc, ppc64, sparc64: io/arff test_arffread.py ++ skip TestNoData ++ ++ -- Drew Parsons Mon, 13 Jun 2022 01:36:20 +0200 ++ ++scipy (1.8.1-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - Depends: python3-numpy (>= 1:1.17.3~) ++ * Build-Depends: pybuild-plugin-pyproject to use pyproject.toml. ++ Closes: #1008680. ++ * Simplify debian/rules back to minimal dh (with python,sphinxdoc) ++ * drop debian/python3-scipy.install: pybuild/pyproject installs ++ directly into debian package dirs ++ * launch build-time tests from /tmp (needs to start outside the ++ source dir) ++ * debian patch skip_tests.patch skips failing tests ++ - linalg: test_decomp.py TestSchur.test_sort and ++ test_solvers.py test_solve_discrete_are ++ see https://github.com/scipy/scipy/issues/14517 ++ - optimize test_optimize.py: test_minimize_l_bfgs_maxls passes but ++ marked as expected to fail ++ * Standards-Version: 4.6.1 ++ ++ -- Drew Parsons Sun, 12 Jun 2022 02:03:37 +0200 ++ ++scipy (1.8.0-1exp2) experimental; urgency=medium ++ ++ * build scipy with pythran support where available [amd64 arm64 m68k] ++ Depends: python3-pythran [amd64 arm64 m68k] ++ Closes: #991753. ++ ++ -- Drew Parsons Tue, 15 Feb 2022 01:41:52 +0100 ++ ++scipy (1.8.0-1exp1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * update debian/copyright: vendored libraries SuperLU and arpack ++ used by sparse/linalg are now treated as private via an ++ _underscore prefix (_dsolve, _eigen) ++ ++ -- Drew Parsons Fri, 11 Feb 2022 22:05:09 +0100 ++ ++scipy (1.7.3-2) unstable; urgency=medium ++ ++ * Team upload. ++ * debian patch hppa-boost-long-double-config.patch disables ++ LONG_DOUBLE in the boost submodule on hppa. Adapted from the boost ++ patch hppa-long-double-config.patch. ++ See https://github.com/scipy/scipy/issues/15260 ++ for discussion of why boost has been vendored for scipy. ++ Closes: #1004197. ++ ++ -- Drew Parsons Fri, 11 Feb 2022 12:11:29 +0100 ++ ++scipy (1.7.3-1) unstable; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * Build-Depends-Indep: python3-sphinx-panels ++ Drop debian patch docs_skip_panels.patch. Closes: #991752. ++ * remove upper bound on python3-pybind11 build-dependency. It's not ++ used upstream in dev code, gets applied only to release versions ++ to make local pip virtualenv installations use known-good versions. ++ Closes: #1002065. ++ * remove upper bound in Build-Depends: python3-numpy, python3-wheel ++ * raise versioned Build-Depends python3-numpy (>= 1.21.4) for ++ python3.10 support. ++ * don't compress woff font files. Apply the same ++ override_dh_compress used for numpy. Closes: #1003282. ++ * add a source lintian override for fortran-si4-11x1x10.dat ++ (source-contains-prebuilt-windows-binary). It's a test data ++ file, not a DOS executable. ++ * Standards-Version: 4.6.0 ++ * update debian/copyright ++ - remove deprecated files debian/patches/css_font_OpenSans.patch, ++ doc/scipy-sphinx-theme/*, scipy/_lib/six.py ++ - acknowledge Jonathan Neal's code snippet "font-family: no-parens" ++ from https://codepen.io/jonneal/pen/bXLEdB (MIT licence) ++ in doc/source/_static/scipy.css ++ - scipy/fft/_pocketfft/ licence applies to all _pocketfft not only ++ pocketfft.cxx ++ - scipy/_lib/uarray/ renamed to _uarray ++ ++ -- Drew Parsons Sun, 09 Jan 2022 14:11:52 +0100 ++ ++scipy (1.7.1-2) unstable; urgency=medium ++ ++ * Drop -dbg package; Closes: #994375 ++ ++ -- Sandro Tosi Wed, 10 Nov 2021 23:57:11 -0500 ++ ++scipy (1.7.1-1) unstable; urgency=medium ++ ++ * Team upload. ++ ++ [ Debian Janitor ] ++ * Use secure URI in Homepage field. ++ * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, ++ Repository-Browse. ++ ++ [ Drew Parsons ] ++ * New upstream release ++ * update upper-versioned Build-Depends ++ - python3-numpy (<< 1.23.0) (see pyproject.toml) ++ - python3-pybind11 (<< 2.8) (build is stable with pybind11 2.7) ++ ++ -- Drew Parsons Wed, 18 Aug 2021 02:07:15 +0200 ++ ++scipy (1.7.0-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - deprecates debian patches css_font_OpenSans.patch and ++ css_font_local.patch ++ * Build with SCIPY_USE_PYTHRAN=0 since pythran is not yet available. ++ pythran packaging requested in Bug#991143. ++ * Build-Depends-Indep: python3-pydata-sphinx-theme, ++ python3-sphinx (>> 3.1) ++ * debian patch docs_skip_panels.patch skips use of sphinx-panels in ++ docs. Not available yet (RFP#991684). ++ * update debian/rules ++ - allow for spaces in filenames in override_dh_fixperms-arch. ++ sobol_vec.gz is no longer installed. ++ - drop special handling for weave. It was removed in scipy 0.15.0. ++ * mark python3-scipy as Multi-Arch: no ++ * lintian fixes ++ - mark scipy/optimize/lbfgsb_src/*.f as License: BSD-generic not BSD ++ - packages override bogus-mail-host-in-debian-changelog ++ Debian/i386 Build Daemon ++ - source override obsolete-url-in-packaging debian/copyright ++ https://code.google.com/archive/p/ampgo ++ * remove deprecated debian/README.source ++ ++ -- Drew Parsons Sat, 31 Jul 2021 01:40:57 +0200 ++ ++scipy (1.6.2-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - fixes matrix dtypes. Closes: #983404. ++ - introduces upper-versioned Build-Depends: cython3 (<< 3.0), ++ python3-pybind11 (<< 2.7), ++ python3-wheel (<< 0.37.0) ++ (leave python3-setuptools uncapped) ++ - also Build-Depends: python3-all-dev (>= 3.7) ++ * Stop ignoring build-time errors in debian/rules. Closes: #967977. ++ ++ -- Drew Parsons Fri, 26 Mar 2021 19:21:49 +0100 ++ ++scipy (1.6.1-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * Depends: python3-numpy (>= 1:1.16.5) ++ ++ -- Drew Parsons Sun, 21 Feb 2021 20:46:00 +0100 ++ ++scipy (1.6.0-2) unstable; urgency=medium ++ ++ * Team upload. ++ * upload new upstream version to unstable ++ ++ -- Drew Parsons Sat, 16 Jan 2021 23:26:56 +1100 ++ ++scipy (1.6.0-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * Standards-Version: 4.5.1 ++ * drop debian/python3-scipy.docs: Thanks.txt no longer shipped. ++ * update debian/copyright for new features ++ - benchmarks/benchmarks/go_benchmark_functions/*.py ++ Copyright: 2013 Andrea Gavana ++ License: expat ++ - scipy/fft/_pocketfft/pocketfft.cxx ++ Copyright: 2010-2019 Max-Planck-Society, Martin Reinecke ++ 2019 Peter Bell. License: BSD-3-clause ++ - scipy/fft/_pocketfft/pocketfft_hdronly.h ++ Copyright: 2010-2019 Max-Planck-Society, Martin Reinecke ++ 2019 Peter Bell, 2003,2007-2014 Matteo Frigo, ++ Massachusetts Institute of Technology. License: BSD-3-clause ++ - scipy/optimize/_highs/* ++ Copyright: 2020 ERGO-Code ++ License: Expat ++ - scipy/sparse/csgraph/_matching.pyx ++ Copyright: 1987, A. Volgenant/Amsterdam School of Economics, ++ University of Amsterdam. License: BSD-3-clause ++ - scipy/_lib/uarray/* ++ Copyright: 2018, Quansight-Labs ++ License: BSD-3-clause ++ ++ -- Drew Parsons Wed, 06 Jan 2021 19:57:43 +1100 ++ ++scipy (1.5.4-1) unstable; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ ++ -- Drew Parsons Sat, 14 Nov 2020 13:36:06 +0800 ++ ++scipy (1.5.3-2) unstable; urgency=medium ++ ++ * Team upload. ++ * push new upstream release to unstable ++ ++ -- Drew Parsons Thu, 05 Nov 2020 03:33:52 +0800 ++ ++scipy (1.5.3-1) experimental; urgency=medium ++ ++ * Team upload. ++ ++ [ Ondřej Nový ] ++ * d/control: Update Maintainer field with new Debian Python Team ++ contact address. ++ * d/control: Update Vcs-* fields with new Debian Python Team Salsa ++ layout. ++ ++ [ Drew Parsons ] ++ * New upstream release. ++ ++ -- Drew Parsons Tue, 03 Nov 2020 13:32:21 +0800 ++ ++scipy (1.5.2-2) unstable; urgency=medium ++ ++ * Team upload. ++ * debian/tests (autopkgtest): add a new test case using BLAS=libblis3 ++ ++ -- Drew Parsons Sat, 01 Aug 2020 12:49:57 +0800 ++ ++scipy (1.5.2-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - update versioned Build-Depends: cython3 (>= 0.29.18), ++ python3-numpy (>= 1:1.14.5), python3-pybind11 (>= 2.4.3) ++ - builds with gfortran 10. Closes: #957780. ++ * debhelper compatibility level 13 ++ ++ -- Drew Parsons Fri, 24 Jul 2020 15:17:18 +0800 ++ ++scipy (1.4.1-2) unstable; urgency=medium ++ ++ * Team upload. ++ * bring new upstream version to unstable ++ ++ -- Drew Parsons Sat, 18 Apr 2020 11:08:42 +0800 ++ ++scipy (1.4.1-1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - applies debian patches fix_custom_sampling_input_2b3ed61.patch ++ and fix_test_NAN_input_iv_7806757.diff ++ - deprecates debian patch use_local_objects.inv.patch ++ - Build-Depends: python3-pybind11 (>= 2.4.0) ++ - Build-Depends-Indep: python3-sphinx (>= 2~) ++ * provide PYTHONPATH as env variable with make doc ++ * Standards-Version: 4.5.0 ++ ++ -- Drew Parsons Fri, 17 Apr 2020 01:11:18 +0800 ++ ++scipy (1.3.3-3) unstable; urgency=medium ++ ++ * Team upload. ++ * skip sparsetools.TestInt32Overflow tests test_bsr_1_block and ++ test_bsr_n_block (they regularly timeout) ++ ++ -- Drew Parsons Fri, 06 Dec 2019 10:22:05 +0800 ++ ++scipy (1.3.3-2) unstable; urgency=medium ++ ++ * Team upload. ++ * add debian patches to avoid internet connections when using docs ++ - css_font_OpenSans.patch adapts font settings from ++ https://fonts.googleapis.com/css?family=Open+Sans ++ (Apache 2.0 licence) ++ - css_font_local.patch uses local font_OpenSans.css from ++ css_font_OpenSans.patch ++ - python-scipy-doc Depends: fonts-open-sans ++ - Closes: #873433. ++ * debian patch fix_custom_sampling_input_2b3ed61.patch applies ++ upstream commit 2b3ed61 to fix syntax. Closes: #945093. ++ ++ -- Drew Parsons Thu, 05 Dec 2019 00:30:25 +0800 ++ ++scipy (1.3.3-1) unstable; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * change source package name to scipy for python3-only, to ++ distinguish from python-scipy which supports python2. ++ * update Vcs salsa repo name to scipy (from python-scipy) ++ ++ -- Drew Parsons Wed, 27 Nov 2019 20:53:58 +0800 ++ ++python-scipy (1.3.1-1exp3) experimental; urgency=medium ++ ++ * Team upload. ++ * update versioned Build-Depends: python3-numpy (>= 1:1.13.3) ++ and cython3 (>= 0.29.2) ++ * Patch fix_test_NAN_input_iv_7806757.diff applies upstream commit ++ 7806757 to fix tests on hppa, riscv64, sparc64. Closes: #934806. ++ ++ -- Drew Parsons Fri, 16 Aug 2019 13:20:27 +0800 ++ ++python-scipy (1.3.1-1exp2) experimental; urgency=medium ++ ++ * Team upload. ++ * build binaries before building docs ++ ++ -- Drew Parsons Tue, 13 Aug 2019 18:45:38 +0800 ++ ++python-scipy (1.3.1-1exp1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ - drops support for Python 2 (python-scipy is no longer provided) ++ - applies patches ++ matrix_API_614847c5.patch ++ matrix_API_filter_check_87e48c3c5.patch ++ matrix_API_more_e0cfa29e2.patch ++ fix_test_optim_canonical_constraint_2d7e7e8c.patch ++ * adjust skipping of spatial tests according to context of test ++ (openblas,atlas specify scipy.spatial) ++ ++ -- Drew Parsons Tue, 13 Aug 2019 15:04:07 +0800 ++ ++python-scipy (1.2.2-8) unstable; urgency=medium ++ ++ * Team upload. ++ ++ [ Ondřej Nový ] ++ * Bump Standards-Version to 4.4.1. ++ ++ [ Drew Parsons ] ++ * only build docs for default python3. Closes: #942794. ++ - apply dh_auto_install to arch-dependent packages only ++ ++ -- Drew Parsons Tue, 19 Nov 2019 02:32:19 +0800 ++ ++python-scipy (1.2.2-7) unstable; urgency=medium ++ ++ * Team upload. ++ * Patch fix_test_NAN_input_iv_7806757.diff applies upstream commit ++ 7806757 to fix tests on mipsel, hppa, riscv64, sparc64 ++ (taken from 1.3.1-1exp3) ++ ++ -- Drew Parsons Sun, 25 Aug 2019 20:37:32 +0800 ++ ++python-scipy (1.2.2-6) unstable; urgency=medium ++ ++ * Team upload. ++ * atlas, openblas tests Depends: python3 ++ ++ -- Drew Parsons Sun, 25 Aug 2019 01:47:34 +0800 ++ ++python-scipy (1.2.2-5) unstable; urgency=medium ++ ++ * Team upload. ++ * adjust skipping of sparse and spatial tests according to context ++ of test (openblas and atlas specify scipy.sparse, scipy.spatial) ++ * run atlas and openblas tests with python3 not python2 ++ ++ -- Drew Parsons Sat, 24 Aug 2019 11:42:02 +0800 ++ ++python-scipy (1.2.2-4) unstable; urgency=medium ++ ++ * Team upload. ++ * debian patch Use-system-LBFGSB.patch: ++ run test_minimize_l_bfgs_maxls with rtol=1e-5 ++ ++ -- Drew Parsons Tue, 30 Jul 2019 09:28:55 +0800 ++ ++python-scipy (1.2.2-3) unstable; urgency=medium ++ ++ * Team upload. ++ * run build-time tests over all versions of python3 ++ * Build-Depends: liblbfgsb-dev and add Debian patch ++ Use-system-LBFGSB.patch to use the system L-BFGS-B library (which ++ uses LAPACK rather than the scipy-bundled LINPACK) ++ Enables test_minimize_l_bfgs_maxls in scipy.optimize to succeed. ++ Thanks Gard Spreemann. Closes: #778635. ++ ++ -- Drew Parsons Tue, 30 Jul 2019 00:26:20 +0800 ++ ++python-scipy (1.2.2-2) unstable; urgency=medium ++ ++ * Team upload. ++ * debhelper compatibility level 12 ++ - run configure build step through pybuild to get consistent ++ build directories ++ - set PYLIBPATH to pybuild build directory ++ * debian/rules: use AUTOPKGTEST_TMP instead of ADTTMP to run tests ++ * v1.2.2 fixes indexing in fftpack. Closes: #924396. ++ * drop ignore_DeprecationWarning_diff1.2.patch (already applied in ++ scipy 1.2) ++ * Register docs with doc-base. Closes: #846253. ++ * debian/tests/python3: skip tests of ++ scipy.spatial.tests.test__plotutils.TestPlotting ++ (see https://github.com/scipy/scipy/issues/9946) ++ ++ -- Drew Parsons Mon, 29 Jul 2019 18:43:34 +0800 ++ ++python-scipy (1.2.2-1) unstable; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ * configure debian/watch to grab tar.xz rather than tar.gz ++ (for smaller tarballs) ++ * debian/rules: build with dh --buildsystem=pybuild ++ * Standards-Version: 4.4.0 ++ ++ -- Drew Parsons Fri, 26 Jul 2019 15:22:36 +0800 ++ ++python-scipy (1.2.1-1exp1) experimental; urgency=medium ++ ++ * Team upload. ++ * New upstream release. ++ ++ -- Drew Parsons Thu, 28 Feb 2019 11:16:38 +0800 ++ ++python-scipy (1.2.0-1) experimental; urgency=medium ++ ++ * New upstream release ++ ++ -- Julian Taylor Tue, 15 Jan 2019 12:27:45 +0100 ++ ++python-scipy (1.1.0-7) unstable; urgency=medium ++ ++ * Team upload. ++ * Patch fix_test_optim_canonical~onstraint_2d7e7e8c.patch applies ++ upstream patch 2d7e7e8 to fix occasional random failures in ++ test_canonical_constraint.test_concatenation. ++ ++ -- Drew Parsons Fri, 12 Apr 2019 00:46:35 +0800 ++ ++python-scipy (1.1.0-6) unstable; urgency=medium ++ ++ * Team upload. ++ * skip sparsetools.TestInt32Overflow matvec tests on python3 also. ++ ++ -- Drew Parsons Thu, 11 Apr 2019 09:38:17 +0800 ++ ++python-scipy (1.1.0-5) unstable; urgency=medium ++ ++ * Team upload. ++ * Skip sparsetools.TestInt32Overflow matvec tests on python2 ++ (MemoryError). Closes: #919929. ++ ++ -- Drew Parsons Wed, 10 Apr 2019 16:41:47 +0800 ++ ++python-scipy (1.1.0-4) unstable; urgency=medium ++ ++ * Team upload. ++ * Replace patch ignore_DeprecationWarning_diff1.2.patch with ++ matrix_API_614847c5.patch ++ matrix_API_filter_check_87e48c3c5.patch ++ matrix_API_more_e0cfa29e2.patch ++ adapting the indicated upstream commits to scipy 1.1.0 ++ (use numpy.matmul instead of @ for matrix multiplication, since @ ++ is not available in python2) ++ Removes sources of matrix DeprecationWarnings. ++ Addresses: Bug#919929. ++ ++ -- Drew Parsons Thu, 14 Mar 2019 14:12:00 +0800 ++ ++python-scipy (1.1.0-3) unstable; urgency=medium ++ ++ * Team upload. ++ * Debian patch ignore_DeprecationWarning_diff1.2.patch applies diff ++ of pytest.ini between scipy 1.1 and 1.2 to ignore ++ DeprecationWarnings from numpy 1.16. Addresses Bug#919929. ++ * Use default gfortran-8 on s390x. unroll-loops was fixed in ++ gcc-8 8.2.0-18. Closes: #906198, #915738. ++ ++ -- Drew Parsons Fri, 08 Mar 2019 00:31:29 +0800 ++ ++python-scipy (1.1.0-2) unstable; urgency=medium ++ ++ * Team upload. ++ * Remove Alexandre Fayolle from the Uploaders list. Thanks for your ++ previous contributions! Closes: #833329 ++ * Use gfortran-7 on s390x to work around a regression causing the imexam ++ test suite to fail when scipy is built with gfortran 8. Addresses: #906198 ++ * Add some Multi-Arch markers suggested by the m-a hinter. ++ ++ -- Mattia Rizzolo Sun, 04 Nov 2018 19:01:19 +0100 ++ ++python-scipy (1.1.0-1) unstable; urgency=medium ++ ++ [ Julian Taylor ] ++ * New upstream release ++ Closes: #896060, #901380, #896635 ++ * update to debian/compat 9 and standard 4.1.4 ++ ++ [ Ondřej Nový ] ++ * d/control: Set Vcs-* to salsa.debian.org ++ * d/copyright: Use https protocol in Format field ++ * d/tests: Use AUTOPKGTEST_TMP instead of ADTTMP ++ * d/control: Remove ancient X-Python-Version field ++ * d/control: Remove ancient X-Python3-Version field ++ ++ -- Julian Taylor Sun, 01 Jul 2018 14:34:28 +0200 ++ ++python-scipy (0.19.1-2) unstable; urgency=medium ++ ++ * Replace python-imaging recomments with python-pil (Closes: #866468) ++ * build documentation with python3-sphinx ++ * Fix atlas and openblas tests for openblas and atlas multiarch locations ++ Thanks to Matthias Klose for the patch (Closes: #876007) ++ * Depend on python-all-dbg for autopkgtests ++ Thanks to Michael Hudson-Doyle for the patch (Closes: #864699) ++ * bump standard to 4.1.3 ++ - debian/control: replace priority extra with optional ++ ++ -- Julian Taylor Sun, 07 Jan 2018 14:38:57 +0100 ++ ++python-scipy (0.19.1-1) unstable; urgency=medium ++ ++ * New upstream release ++ * weave has been removed, drop its patch blitz++.patch ++ * drop cap-ld-precision.patch, fixed in numpy ++ ++ -- Julian Taylor Wed, 06 Sep 2017 18:07:38 +0200 ++ ++python-scipy (0.18.1-2.1) unstable; urgency=high ++ ++ * Non-maintainer upload. ++ * No-change rebuild to build without _PyFPE symbols. ++ ++ -- Matthias Klose Tue, 05 Sep 2017 16:36:34 +0200 ++ ++python-scipy (0.18.1-2) unstable; urgency=medium ++ ++ * fix dbg package import (Closes: #840264) ++ * add dbg package import adt tests ++ ++ -- Julian Taylor Fri, 21 Oct 2016 16:10:57 +0200 ++ ++python-scipy (0.18.1-1) unstable; urgency=medium ++ ++ [ Julian Taylor ] ++ * New upstream bugfix release ++ ++ [ Sebastian Humenda ] ++ * make the build-indep target execute the build target to allow the usage of ++ the module for generating the documentation (Closes: #806867) ++ ++ -- Julian Taylor Sun, 25 Sep 2016 11:25:21 +0200 ++ ++python-scipy (0.18.0-1) unstable; urgency=medium ++ ++ * New upstream release ++ * add python-setuptools to build depends ++ ++ -- Julian Taylor Sat, 30 Jul 2016 19:05:17 +0200 ++ ++python-scipy (0.17.1-1) unstable; urgency=medium ++ ++ [ Julian Taylor ] ++ * New upstream bugfix release ++ * enable parallel build based on DEB_BUILD_OPTIONS ++ * bump standard to 3.9.7, no changes required ++ ++ [ Ondřej Nový ] ++ * Fixed VCS URL (https) ++ ++ -- Julian Taylor Mon, 23 May 2016 20:02:14 +0200 ++ ++python-scipy (0.17.0-1) unstable; urgency=medium ++ ++ * New upstream release ++ ++ -- Julian Taylor Sat, 23 Jan 2016 20:39:44 +0100 ++ ++python-scipy (0.16.1-1) unstable; urgency=medium ++ ++ * New upstream bugfix release ++ * update adt-tests to new layout ++ * remove duplicate files in -doc package ++ ++ -- Julian Taylor Sun, 25 Oct 2015 11:51:34 +0100 ++ ++python-scipy (0.16.0-2) unstable; urgency=medium ++ ++ [ Julian Taylor ] ++ * bump cython build-depend to required 0.22 ++ ++ [ Jean-Christophe Jaskula ] ++ * fix build of documentation in arch only builds ++ ++ -- Julian Taylor Mon, 24 Aug 2015 09:51:10 +0200 ++ ++python-scipy (0.16.0-1) unstable; urgency=medium ++ ++ [ Varun Hiremath ] ++ * New upstream release ++ * Bump Standards-Version to 3.9.6 ++ * Remove upstream applied patches: ++ - fitpack-alias.patch ++ - fix-undefined-behavior-in-alngam.patch ++ - relax-bounds-of-interpolate-test.patch ++ * d/rules: minor build fixes ++ ++ [ Jean-Christophe Jaskula ] ++ * Pointed debian/watch to github.com (cleaner sources) ++ * d/control: ++ - Added dh_python to B-d ++ - Removed unnecessary XS-Testsuite field ++ * Linking to local javascript libraries ++ - use_local_mathjax.patch ++ * Using local intersphinx objects ++ - use_local_objects.patch ++ * Cleaned debian/copyright ++ ++ -- Varun Hiremath Sun, 23 Aug 2015 23:01:46 -0400 ++ ++python-scipy (0.14.1-1) unstable; urgency=medium ++ ++ * New upstream bugfix release ++ remove upstream applied patches: ++ - numpy-version-fix.patch ++ - numpy_ufunc.patch ++ - put-_gen-classes-back.patch ++ - put-back-veccdf.patch ++ - sparse-fix-omitted-types.patch ++ - sparse-superlu-fix.patch ++ * add python-gmpy2 dependency to autopkgtest to speed up mpmath tests ++ * add suggest on python-scipy-doc (Closes: #760522) ++ * debian/copyright: add bootstrap Apache 2.0 license ++ ++ -- Julian Taylor Fri, 05 Sep 2014 18:56:54 +0200 ++ ++python-scipy (0.14.0-2) unstable; urgency=medium ++ ++ * add patches to fix test failures on i386 and mips: ++ - fix-undefined-behavior-in-alngam.patch (Closes: #756905) ++ - relax-bounds-of-interpolate-test.patch ++ * add patches from 0.14.x maintenance branch: ++ - sparse-superlu-fix.patch: fix crash ++ - sparse-fix-omitted-types.patch: fix crash ++ - put-back-veccdf.patch: restore stats api ++ - put-_gen-classes-back.patch: restore stats api ++ - numpy-version-fix.patch: fix wrong version check ++ - numpy_ufunc.patch: compatibility with numpy 1.9 ++ ++ -- Julian Taylor Wed, 27 Aug 2014 14:40:24 +0200 ++ ++python-scipy (0.14.0-1) unstable; urgency=low ++ ++ [ Denis Laxalde ] ++ * Add the documentation binary package (Closes: #600547). ++ ++ [ Julian Taylor ] ++ * New upstream release ++ * drop not swig build dependency and reswig.patch, not needed anymore ++ * use embedded six, current unstable version not compatible ++ * fitpack-alias.patch: fix wrong aliasing in interpolate.splder ++ ++ -- Julian Taylor Fri, 23 May 2014 10:37:06 +0200 ++ ++python-scipy (0.13.3-2) unstable; urgency=medium ++ ++ * upload to unstable ++ * add build-essential dependency to adt tests, needed for weave ++ ++ -- Julian Taylor Mon, 31 Mar 2014 23:32:16 +0200 ++ ++python-scipy (0.13.3-1) experimental; urgency=low ++ ++ * New upstream release ++ * ignore TestSplder.test_kink adt failure, probably numerical error ++ ++ -- Julian Taylor Tue, 04 Feb 2014 19:48:01 +0100 ++ ++python-scipy (0.13.2-1) experimental; urgency=low ++ ++ * New upstream release ++ * update X-Python-Version to >= 2.6 ++ * require python3-numpy (>= 1:1.7.2) for hashing fixes ++ * bump standard to 3.9.5, no changes required ++ * bump cython dependency to >= 0.19 to avoid leaks with fused types ++ ++ -- Julian Taylor Mon, 21 Oct 2013 18:59:29 +0200 ++ ++python-scipy (0.13.0~b1-1) experimental; urgency=low ++ ++ [ Julian Taylor ] ++ * New upstream beta release ++ * require python-six >= 1.3.0, scipy ships a slightly patched 1.2.0, ++ version 1.3.0 includes the patches ++ ++ [ Varun Hiremath ] ++ * Fix debian/watch file ++ ++ -- Julian Taylor Sat, 07 Sep 2013 18:06:00 +0200 ++ ++python-scipy (0.12.0-3) unstable; urgency=high ++ ++ * temporary-directory-usage.patch: ++ fix insecure temporary directory usage of weave module. (Closes: #726093) ++ Thanks to Tomas Tomecek for the patch. ++ ++ -- Julian Taylor Tue, 22 Oct 2013 23:44:47 +0200 ++ ++python-scipy (0.12.0-2) unstable; urgency=low ++ ++ * ignore testsuite failures to not block python3.3 transition ++ only masks issues on hardly used ports ++ ++ -- Julian Taylor Mon, 01 Jul 2013 20:09:40 +0200 ++ ++python-scipy (0.12.0-1) unstable; urgency=low ++ ++ [ Julian Taylor ] ++ * New upstream release, no repackaging required anymore ++ - Closes: #707315 ++ - Closes: #691254 ++ * also fail on test failures not only test errors ++ * skip failing test_mio on big endian python3 >= 3.2 ++ * print skipped tests and unused skips in autopkgtest scripts ++ * add-swig-filetypes.patch, reswig.patch: ++ reswigging from setup.py, dropped from debian/rules ++ * cython-wraparound.patch: fix issue in ckdtree.pyx ++ * qhull-lfs.patch: enable large file support ++ * cap-ld-precision.patch: fix test failures due to broken np.finfo on ppc ++ * refresh patches and remove upstream applied: ++ - BUG-fix-dependency-on-dict-ordering-in-test.patch ++ - BUG-remove-inline-statement-rejected-by-cython.patch ++ - fix-dbg-crash.patch ++ - fix-f2py-dependencies.patch ++ - fix-test_basic.py-cephes_vs_amos_mass_te.patch ++ - python3.3-incdir.diff ++ * Bump standard to 3.9.4, no changes required ++ * drop unused sharutils build depend and python-profiler from suggests ++ * use system python-six and python-decorator instead of embedded copies ++ * don't install setup.py and generator scripts ++ ++ [ Jakub Wilk ] ++ * Use canonical URIs for Vcs-* fields. ++ * Remove DM-Upload-Allowed; it's no longer used by the archive ++ software. ++ ++ -- Julian Taylor Thu, 09 May 2013 11:35:07 +0200 ++ ++python-scipy (0.11.0+dfsg1-1) experimental; urgency=low ++ ++ * New upstream release ++ * bump required cython to >= 0.17 ++ * refresh patches: ++ - drop upstream applied: ++ - interpnd-generator.patch ++ - dtype.diff, ++ - kolmogorov.diff, ++ - up_minpack_ints.diff ++ - kde.diff ++ - new patches for python3.3 compatibility and test fixing: ++ - BUG-remove-inline-statement-rejected-by-cython.patch ++ - BUG-fix-dependency-on-dict-ordering-in-test.patch ++ - fix-test_basic.py-cephes_vs_amos_mass_te.patch ++ - python3.3-incdir.diff ++ - fix-dbg-crash.patch ++ - fix-f2py-dependencies.patch ++ * add autopkgtests ++ * run fast tests during build ++ * update debian/copyright to dep5 ++ ++ -- Julian Taylor Fri, 25 Jan 2013 23:54:43 +0100 ++ ++python-scipy (0.10.1+dfsg2-1) unstable; urgency=low ++ ++ * add missing cython and swig sources from git tag (Closes: #589731) ++ * generate cython c files, requires python-mako and cython build depends ++ * ensure that all swig files are regenerated ++ * update debian/orig-tar.sh appropriately ++ * interpnd-generator.patch: fix the interpnd.pyx generation ++ ++ -- Julian Taylor Thu, 29 Nov 2012 21:56:31 +0100 ++ ++python-scipy (0.10.1+dfsg1-4) unstable; urgency=low ++ ++ [ Julian Taylor ] ++ * use dh_numpy3 ++ - build depend on python3-numpy >= 1:1.6.2~rc1-1~ ++ * debian/rules: remove reference to pyshared ++ ++ [ Varun Hiremath ] ++ * debian/patches: ++ - add dtype.diff (Closes: #682030) ++ - add up_minpack_ints.diff, thanks to Yaroslav Halchenko (Closes: #681270) ++ ++ -- Varun Hiremath Sat, 21 Jul 2012 17:23:02 -0400 ++ ++python-scipy (0.10.1+dfsg1-3) unstable; urgency=low ++ ++ * wrap-and-sort debian folder ++ * add python3 packages (Closes: #664785) ++ * debian/rules: ++ - split the build into build and install step ++ - use .install files instead of direct setup.py install ++ ++ -- Julian Taylor Fri, 20 Apr 2012 21:59:33 +0200 ++ ++python-scipy (0.10.1+dfsg1-2) unstable; urgency=low ++ ++ * debian/control: ++ - Recommends: python-imaging (Closes: #648036) ++ - Recommends: python-dev (Closes: #651760) ++ * debian/patches: ++ - Add kolmogorov.diff, thanks to Yaroslav Halchenko (Closes: #653948) ++ - Add kde.diff (Closes: #648034) ++ ++ -- Varun Hiremath Fri, 20 Apr 2012 02:37:28 -0400 ++ ++python-scipy (0.10.1+dfsg1-1) unstable; urgency=low ++ ++ * New upstream release (Closes: #653262) ++ * Update debian/orig-tar.sh script ++ * debian/patches ++ - updated restore_sys_argv.patch ++ - removed string_exception.patch, not needed ++ ++ -- Varun Hiremath Thu, 19 Apr 2012 16:14:28 -0400 ++ ++python-scipy (0.9.0+dfsg1-1) unstable; urgency=low ++ ++ * New upstream release (Closes: #614407, #579041, #569008) ++ * Convert to dh_python2 (Closes: #617028) ++ ++ -- Varun Hiremath Wed, 06 Apr 2011 21:26:25 -0400 ++ ++python-scipy (0.8.0+dfsg1-1) experimental; urgency=low ++ ++ [ Varun Hiremath ] ++ * New upstream release ++ * Build-Depend on python-numpy-* (>= 1:1.5.1) ++ * Update all the debian/patches/* ++ ++ [ Luca Falavigna ] ++ * Remove myself from Uploaders. ++ ++ [ Stefano Rivera ] ++ * debian/patches/blitz++.patch: Fix scipy.weave.inline compilations. Thanks ++ to Sameer Morar (Closes: #598520, LP: #302649) ++ ++ -- Varun Hiremath Fri, 24 Dec 2010 08:20:54 -0500 ++ ++python-scipy (0.7.2+dfsg1-1) unstable; urgency=low ++ ++ * Release with a new source tarball with missing cython source files ++ * debian/rules: Add get-orig-source target ++ * Add debian/README.source explaining the repackaging of source tarball ++ * Add debian/orig-tar.sh to add missing cython source files to the ++ source tarball (Closes: #589731) ++ * debian/rules: add call to dh_numpy to generate stricter versioned ++ depends on python-numpy (Closes: #590763) ++ * Bump Standards-Version to 3.9.1 ++ * Add myself to Uploaders ++ ++ -- Varun Hiremath Fri, 30 Jul 2010 18:29:18 -0400 ++ ++python-scipy (0.7.2-2) unstable; urgency=low ++ ++ * debian/patches/string_exceptions.patch: ++ - Do not use string exceptions, not supported by Python 2.6. ++ ++ -- Luca Falavigna Mon, 07 Jun 2010 14:52:40 +0200 ++ ++python-scipy (0.7.2-1) unstable; urgency=low ++ ++ * New upstream release. ++ * Switch to debhelper 7. ++ * Provide python-scipy-dbg package (Closes: #525329). ++ * Add myself to Uploaders. ++ ++ -- Luca Falavigna Sun, 25 Apr 2010 17:21:21 +0200 ++ ++python-scipy (0.7.1-1) unstable; urgency=low ++ ++ [ Sandro Tosi ] ++ * debian/control ++ - removed Marco Presi from uploaders: thanks for your work! ++ ++ [ Luca Falavigna ] ++ * New upstream release. ++ - Fix KeyError exception in sparse module (Closes: #525109). ++ - Fix SyntaxWarning exception with python2.6 (Closes: #567148). ++ * debian/patches/restore_sys_argv.patch: ++ - Restore sys.argv in case of exception (Closes: #500814). ++ * debian/control: ++ - Depend on ${misc:Depends}. ++ - Drop useless Conflicts/Replaces fields. ++ - Bump Standards-Version to 3.8.4, no changes required. ++ * debian/README.Debian: ++ - Remove obsolete information. ++ * debian/pycompat: ++ - Remove, useless. ++ ++ -- Debian Python Modules Team Mon, 05 Apr 2010 17:10:56 +0200 ++ ++python-scipy (0.7.0-2) unstable; urgency=medium ++ ++ [ Julien Lavergne ] ++ * debian/copyright : Update Copyright holders (Closes: #524131) ++ * From Ubuntu, prepare for the future python transition: ++ - debian/rules: ++ + Include /usr/share/python/python.mk ++ + Add $(py_setup_install_args) to setup.py install ++ + Replace site-packages by *-packages ++ - debian/control: ++ + Bump build-depends to python-all-dev (>= 2.5.4-1~) ++ ++ [ Luca Falavigna ] ++ * Remove patches, they are no longer needed and also causing FTBFS with ++ recent python-numpy. Remove quilt machinery too (Closes: #545606). ++ * debian/copyright: add missing copyright holder (Closes: #540504). ++ * debian/control: bump Standards-Version to 3.8.3, no changes required. ++ * debian/watch: fix regex to report correct upstream stable version. ++ ++ -- Debian Python Modules Team Tue, 15 Sep 2009 23:30:12 +0200 ++ ++python-scipy (0.7.0-1) unstable; urgency=low ++ ++ [ Ondrej Certik ] ++ * Beta version ++ * debian/patches: scipy_include_fix.diff and segfault.patch removed (applied ++ upstream), swig_ftbfs.dpatch and umfpack.dpatch updated to new paths ++ ++ [ Sandro Tosi ] ++ * debian/control ++ - switch Vcs-Browser field to viewsvn ++ ++ [ David Cournapeau ] ++ * New upstream version ++ * Remove obsolete dependencies on libfftw3-dev, libx11-dev and libnetcdf-dev ++ * Update version for numpy dependency: scipy requires version >= 1.2.0 ++ * Set ATLAS to None when building scipy to avoid depending on ATLAS API, and ++ only use BLAS/LAPACK public API, even when ATLAS is installed on the build ++ machine ++ ++ -- Ondrej Certik Sun, 08 Mar 2009 18:47:03 -0700 ++ ++python-scipy (0.6.0-12) unstable; urgency=low ++ ++ * The description updated to match the current SciPy (Closes: #489149). ++ * Standards-Version bumped to 3.8.0 (no action needed) ++ * Build-Depends: netcdf-dev changed to libnetcdf-dev ++ ++ -- Ondrej Certik Mon, 16 Jun 2008 22:58:01 +0200 ++ ++python-scipy (0.6.0-11.1) unstable; urgency=low ++ ++ * Non-maintainer upload. ++ * Change description to refer to python-numpy package instead of Numeric ++ to avoid confusion with python-numeric package. ++ ++ -- Chris AtLee Wed, 23 Apr 2008 15:45:22 -0400 ++ ++python-scipy (0.6.0-11) unstable; urgency=low ++ ++ * Fixes FTBFS, by unexporting LDFLAGS and setting FFLAGS directly, the same ++ hack as in numpy (Closes: #475990) ++ ++ -- Ondrej Certik Mon, 14 Apr 2008 14:53:57 +0200 ++ ++python-scipy (0.6.0-10) unstable; urgency=low ++ ++ [Sandro Tosi] ++ * Fixes a dangling symlink (Closes: #471825) ++ ++ -- Ondrej Certik Thu, 20 Mar 2008 14:50:31 +0100 ++ ++python-scipy (0.6.0-9) unstable; urgency=medium ++ ++ * Uses correct pycentral locations (Closes: #471549) ++ ++ -- Ondrej Certik Wed, 19 Mar 2008 21:41:12 +0100 ++ ++python-scipy (0.6.0-8) unstable; urgency=low ++ ++ * Build depend on libsuitesparse (>= 3.1.0-3) ++ * Build depends fixed to use gfortran based lapack and blas (Closes: #466868) ++ ++ -- Ondrej Certik Sat, 23 Feb 2008 01:21:51 +0100 ++ ++python-scipy (0.6.0-7) unstable; urgency=low ++ ++ * Bumped the version, because python-numpy conflicts with python-scipy (<= ++ 0.6.0-6). This compiles against the old suitesparse, but it makes the ++ package installable and working again. ++ ++ -- Ondrej Certik Thu, 21 Feb 2008 15:38:00 +0100 ++ ++python-scipy (0.6.0-6) UNRELEASED; urgency=low ++ ++ * debian/control ++ - uniforming both Vcs-Svn and Vcs-Browser fields ++ ++ -- Sandro Tosi Thu, 03 Jan 2008 12:18:46 +0100 ++ ++python-scipy (0.6.0-5.1) unstable; urgency=low ++ ++ * Non-maintainer upload. ++ * Changed `fftw3-dev' to `libfftw3-dev' to get rid of that dependency ++ on a virtual package. ++ * Fix FTBFS with relation to swig with a patch provided by ++ Kumar Appaiah (Closes: #456892) ++ ++ -- Philipp Kern Mon, 31 Dec 2007 13:45:10 +0100 ++ ++python-scipy (0.6.0-5) unstable; urgency=low ++ ++ * DM-Upload-Allowed changed to XS-DM-Upload-Allowed ++ * standards-version made uptodate (3.7.3) ++ * don't create an empty dir usr/share/doc/python-scipy/weave/ ++ ++ -- Ondrej Certik Tue, 04 Dec 2007 22:27:48 +0100 ++ ++python-scipy (0.6.0-4) unstable; urgency=low ++ ++ * Use quilt (much eaiser to use) instead of dpatch ++ * Paul's patch added (Closes: #452991) ++ * Add DM-Upload-Allowed: yes ++ ++ -- Ondrej Certik Mon, 03 Dec 2007 15:33:24 +0100 ++ ++python-scipy (0.6.0-3) unstable; urgency=low ++ ++ [ Piotr Ożarowski ] ++ * Rename XS-Vcs-* fields to Vcs-* (dpkg supports them now) ++ ++ [ Ondrej Certik ] ++ * Depending on libsuitesparse-dev directly instead of libufsparse-dev ++ (Closes: #445771) ++ ++ -- Ondrej Certik Mon, 15 Oct 2007 20:09:07 +0200 ++ ++python-scipy (0.6.0-2) unstable; urgency=medium ++ ++ * Replaced fftw-dev with fftw3-dev in Build-Depends (closes: #444124) ++ ++ -- Piotr Ożarowski Wed, 26 Sep 2007 23:52:25 +0200 ++ ++python-scipy (0.6.0-1) unstable; urgency=low ++ ++ [Ondřej Čertík] ++ * New upstream release ++ * watch file added ++ ++ [Piotr Ożarowski] ++ * Homepage field added ++ ++ -- Ondrej Certik Sun, 23 Sep 2007 16:14:35 +0200 ++ ++python-scipy (0.5.2.1-2) unstable; urgency=low ++ ++ * Got rid of all lintian and linda warnings (removed "SciPy is an open ++ source library of scientific tools for Python" (first sentence) from the ++ long description) ++ * debian/control: Added XS-Vcs-Svn and XS-Vcs-Browser fields to the Source ++ section ++ ++ -- Ondrej Certik Fri, 31 Aug 2007 04:29:55 +0200 ++ ++python-scipy (0.5.2.1-1) unstable; urgency=low ++ ++ * Adopting the package ++ * New upstream release (Closes: #426012) ++ * Removed unnecessary patches ++ * Removing LICENSE.txt, since it is unnecessary (and it fixes a lintian ++ warning) ++ ++ -- Ondrej Certik Tue, 28 Aug 2007 12:03:29 +0200 ++ ++python-scipy (0.5.2-9) experimental; urgency=low ++ ++ * Added Build-Dep on python-numpy (Closes: 422389) ++ * Made build independent of the python version (Closes: 414626) ++ * Added a new patch on sandbox/montecarlo to fix py2.5 compatibility ++ ++ -- Marco Presi (Zufus) Fri, 18 May 2007 11:12:31 +0100 ++ ++python-scipy (0.5.2-8) experimental; urgency=low ++ ++ * Fixed compatibility with numpy >= 1.0.2, by importing parts from upstream svn ++ ++ -- Marco Presi (Zufus) Sat, 21 Apr 2007 22:46:29 +0100 ++ ++python-scipy (0.5.2-7+b1) unstable; urgency=low ++ ++ * Binary-only non-maintainer upload for i386; no source changes. ++ * Rebuild to fix binaries built against experimental ++ ++ -- Debian/i386 Build Daemon Tue, 27 Feb 2007 02:01:45 -0600 ++ ++python-scipy (0.5.2-7) unstable; urgency=low ++ ++ * Added 'm86k' among the archs on which xplt should not build. ++ ++ -- Marco Presi (Zufus) Sat, 24 Feb 2007 13:40:42 +0000 ++ ++python-scipy (0.5.2-6) unstable; urgency=low ++ ++ * Merged patch for image viwer from upstream svn ++ ++ -- Marco Presi (Zufus) Sat, 24 Feb 2007 01:39:18 +0000 ++ ++python-scipy (0.5.2-5) experimental; urgency=low ++ ++ * Added a fix in sandbox/montecarlo tests that prevented installation ++ ++ -- Marco Presi (Zufus) Thu, 22 Feb 2007 01:33:18 +0000 ++ ++python-scipy (0.5.2-4) experimental; urgency=low ++ ++ * Incorporated code from setup_without_xplt.py into patches/sandbox.dpatch, in order to ++ build sandbox/xplt only on supported archs (Closes: #407869). ++ * Added libx11-dev among Build-Deps to support xplt. ++ ++ -- Marco Presi (Zufus) Thu, 22 Feb 2007 00:33:51 +0000 ++ ++python-scipy (0.5.2-3) experimental; urgency=low ++ ++ * Added netcdfg-dev Build-Deps (completed sandbox inclusion) ++ ++ -- Marco Presi (Zufus) Tue, 20 Feb 2007 23:28:43 +0000 ++ ++python-scipy (0.5.2-2) experimental; urgency=low ++ ++ * Enabled sandbox modules. To this aim randomkit.[ch] are included from ++ pyhon-numpy sources. See debian/patches/sandbox.dpatch ++ (Closes: #407869). ++ ++ -- Marco Presi (Zufus) Mon, 19 Feb 2007 19:26:22 +0000 ++ ++python-scipy (0.5.2-1) unstable; urgency=low ++ ++ * Fixed scipy.signal segfault (closes: #410757) ++ * Replaced hard-coded xv command with "see" (from mime-support). ++ Additionally, the environment variable SCIPY_PIL_IMAGE_VIEWER can be set. ++ (Closes: #395198) ++ ++ -- Marco Presi (Zufus) Sun, 18 Feb 2007 16:22:03 +0000 ++ ++python-scipy (0.5.2-0.1) unstable; urgency=medium ++ ++ * Remove build dependency on python-numpy-dev. ++ * python-scipy: Depend on python-numpy instead of python-numpy-dev. ++ * Package builds on other archs than i386. Closes: #402783. ++ ++ -- Matthias Klose Sun, 7 Jan 2007 14:12:12 +0100 ++ ++python-scipy (0.5.2-0) experimental; urgency=low ++ ++ * New upstream version (compatible with python-numpy-1.0.x). ++ * (Build-)depend on python-numpy (>= 1:1.0.1). ++ * Remove redundant (build-)dependencies. ++ * weave examples and docs are removed from the upstream tarball. ++ ++ -- Matthias Klose Wed, 3 Jan 2007 22:37:49 +0100 ++ ++python-scipy (0.5.1-3) unstable; urgency=low ++ ++ * Moved weave/examples into /usr/share/doc/python-scipy/ ++ and removed *.so files that prevented building on non x86 archs ++ (closes: #397241) ++ ++ -- Marco Presi (Zufus) Sat, 16 Sep 2006 18:46:56 +0200 ++ ++python-scipy (0.5.1-2) unstable; urgency=low ++ ++ * Added swig and libufsparse-dev among Build-deps ++ ++ -- Marco Presi (Zufus) Mon, 11 Sep 2006 22:05:45 +0200 ++ ++python-scipy (0.5.1-1) unstable; urgency=low ++ ++ * New upstream release ++ ++ -- Marco Presi (Zufus) Thu, 7 Sep 2006 00:32:07 +0200 ++ ++python-scipy (0.5.0-3) unstable; urgency=low ++ ++ * Re-compiled to reflect C-API changes in numpy. ++ ++ -- Marco Presi (Zufus) Fri, 18 Aug 2006 01:06:06 +0200 ++ ++python-scipy (0.5.0-2) unstable; urgency=low ++ ++ * Re-added fftw-dev among build-deps. ++ ++ -- Marco Presi (Zufus) Tue, 8 Aug 2006 17:34:44 -0400 ++ ++python-scipy (0.5.0-1) unstable; urgency=low ++ ++ * New upstream release ++ * Removed debian/patches/python2.3.dpatch now included in upstream release ++ ++ -- Marco Presi (Zufus) Sun, 30 Jul 2006 00:33:21 +0200 ++ ++python-scipy (0.4.9-2) unstable; urgency=low ++ ++ * Build against new release of python-numpy. ++ ++ -- José Fonseca Wed, 05 Jul 2006 18:06:41 +0100 ++ ++python-scipy (0.4.9-1) unstable; urgency=low ++ ++ * New upstream version. ++ ++ -- José Fonseca Tue, 04 Jul 2006 16:11:01 +0100 ++ ++python-scipy (0.3.2-9) unstable; urgency=low ++ ++ * Updated to new python policy (closes: #373352) ++ * Updated standards to 3.7.2 ++ ++ -- Alexandre Fayolle Thu, 15 Jun 2006 17:10:49 +0200 ++ ++python-scipy (0.3.2-8) unstable; urgency=low ++ ++ * Changed dependency on libwxgtk2.4-1-python to python-wxgtk2.4 (closes: #333795) ++ * Added cow progress bar fix by Glen W. Mabey (closes: #322796) ++ ++ -- Alexandre Fayolle Tue, 8 Nov 2005 11:56:51 +0100 ++ ++python-scipy (0.3.2-7) unstable; urgency=low ++ ++ * Depend on libwxgtk2.4-1-python due to new C++ ABI. ++ * Do not depend on obsolete blas-dev (Closes: #320441) ++ * Drop the python2.2 version due to python2.2-numeric removal. ++ * Applied Andreas Jochens' patch fixing gcc4.0 storage class ++ error (Closes: #302598) ++ ++ -- José Fonseca Sun, 31 Jul 2005 11:11:42 +0100 ++ ++python-scipy (0.3.2-6) unstable; urgency=low ++ ++ * Added a Suggests: python2.X-profiler in debian/control, made the ++ import of pstats optional by patching stats/__init__.py ++ (Closes: #296796) ++ ++ -- Alexandre Fayolle Fri, 11 Mar 2005 10:54:35 +0100 ++ ++python-scipy (0.3.2-5) unstable; urgency=low ++ ++ * Applied Adam Conrad's patch to allow build on m68k (Closes: #292919) ++ * Applied Andreas Jochens' patch fixing gcc4.0 incompatibility and ++ syntax error in debian/control (Closes: #288181) ++ ++ -- Alexandre Fayolle Thu, 17 Feb 2005 14:49:03 +0100 ++ ++python-scipy (0.3.2-4) unstable; urgency=low ++ ++ * Build for python 2.4. ++ ++ -- José Fonseca Mon, 24 Jan 2005 12:25:16 +0000 ++ ++python-scipy (0.3.2-3) unstable; urgency=low ++ ++ * fixed build dependencies on arm (Closes: #277897) ++ ++ -- Alexandre Fayolle Sat, 23 Oct 2004 11:28:51 +0200 ++ ++python-scipy (0.3.2-2) unstable; urgency=low ++ ++ * Updated package description ++ * removed scipy.xplt on hppa, s390, ia64, mips, mipsel (Closes: #277485) ++ * Added note about the missing module in README.Debian ++ ++ -- Alexandre Fayolle Fri, 22 Oct 2004 15:05:00 +0200 ++ ++python-scipy (0.3.2-1) unstable; urgency=low ++ ++ * New version. ++ ++ -- José Fonseca Mon, 18 Oct 2004 16:28:16 +0100 ++ ++python-scipy (0.3.0+266.4239-1) unstable; urgency=low ++ ++ * Updated to release. ++ * Recommends c++-compiler. ++ * Dropped python2.1 support. ++ * Official package (closes: #126037). ++ * Added Alexandre Fayolle and Marco Presi as uploaders ++ * Added missing build dependencies ++ ++ -- Alexandre Fayolle Mon, 13 Sep 2004 23:04:34 +0200 ++ ++python-scipy (0.2.0+cvs20031002-1) unstable; urgency=low ++ ++ * Moved scipy_core into a seperate package. ++ * Default to python-2.3. ++ ++ -- José Fonseca Thu, 02 Oct 2003 13:31:30 +0100 ++ ++python-scipy (0.2.0+alpha144.4350-1) unstable; urgency=low ++ ++ * Initial Release. ++ ++ -- José Fonseca Tue, 01 Jul 2003 13:35:03 +0100 diff --cc debian/control index 00000000,00000000..0fdb0e6e new file mode 100644 --- /dev/null +++ b/debian/control @@@ -1,0 -1,0 +1,85 @@@ ++Source: scipy ++Section: python ++Priority: optional ++Maintainer: Debian Python Team ++Uploaders: Ondrej Certik , ++ David Cournapeau , ++ Varun Hiremath ++Build-Depends: cython3 (>= 0.29.18), cython3 (<< 3.0), ++ debhelper-compat (= 13), ++ dh-python, ++ pybuild-plugin-pyproject, ++ gfortran, ++ libblas-dev, ++ liblapack-dev, ++ liblbfgsb-dev, ++ libsuitesparse-dev (>= 3.1.0-3), ++ python3-all-dev (>= 3.7), ++ python3-decorator, ++ python3-numpy (>= 1:1.21.4), ++ python3-pybind11 (>= 2.4.3), ++ python3-pytest, ++ python3-setuptools, ++ python3-sphinx | sphinx, ++ python3-wheel, ++ python3-pythran [!armhf] ++Build-Depends-Indep: dvipng, ++ python3-doc, ++ python3-docutils, ++ python3-matplotlib, ++ python3-numpydoc, ++ python3-pydata-sphinx-theme, ++ python3-sphinx-panels, ++ rdfind, ++ symlinks, ++ texlive-latex-base, ++ texlive-latex-extra ++Standards-Version: 4.6.1 ++Homepage: https://www.scipy.org/ ++Vcs-Git: https://salsa.debian.org/python-team/packages/scipy.git ++Vcs-Browser: https://salsa.debian.org/python-team/packages/scipy ++ ++Package: python3-scipy ++Architecture: any ++Multi-Arch: no ++Depends: python3-decorator, ++ python3-numpy (>= 1:1.17.3~), ++ python3-pythran [!armhf], ++ ${misc:Depends}, ++ ${python3:Depends}, ++ ${shlibs:Depends} ++Recommends: g++ | c++-compiler, python3-pil ++Suggests: python-scipy-doc ++Description: scientific tools for Python 3 ++ SciPy supplements the popular NumPy module (python-numpy package), gathering a ++ variety of high level science and engineering modules together as a single ++ package. ++ . ++ SciPy is a set of Open Source scientific and numeric tools for Python. It ++ currently supports special functions, integration, ordinary differential ++ equation (ODE) solvers, gradient optimization, genetic algorithms, parallel ++ programming tools, an expression-to-C++ compiler for fast execution, and ++ others. ++ ++Package: python-scipy-doc ++Depends: fonts-open-sans, ++ libjs-jquery, ++ libjs-mathjax, ++ libjs-underscore, ++ ${misc:Depends}, ++ ${sphinxdoc:Depends} ++Section: doc ++Architecture: all ++Multi-Arch: foreign ++Description: scientific library for Python - documentation ++ SciPy supplements the popular NumPy module (python-numpy package), gathering a ++ variety of high level science and engineering modules together as a single ++ package. ++ . ++ SciPy is a set of Open Source scientific and numeric tools for Python. It ++ currently supports special functions, integration, ordinary differential ++ equation (ODE) solvers, gradient optimization, genetic algorithms, parallel ++ programming tools, an expression-to-C++ compiler for fast execution, and ++ others. ++ . ++ This package contains documentation for the SciPy library. diff --cc debian/copyright index 00000000,00000000..a01c62bc new file mode 100644 --- /dev/null +++ b/debian/copyright @@@ -1,0 -1,0 +1,411 @@@ ++Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ ++Upstream-Name: SciPy ++Source: http://www.scipy.org/ ++ ++Files: * ++Copyright: 2003-2019 SciPy Developers ++ 1999-2005 Travis Oliphant ++ 2001-2002 Enthought, Inc. ++ 2002 Eric Jones ++ 2002 Patrick J. Miller ++ 2002-2003 Jochen Kuepper ++ 2002-2004 Pearu Peterson ++ 2002-2005 Jean-Sebastien Roy ++ 2003-2005 Peter J. Verveer ++ 2003-2006 Ed Schofield ++ 2003-2012 SciPy Developers. ++ 2004 David M. Cooke ++ 2006 Bart Vandereycken ++ 2006 BasSw ++ 2006 Johannes Loehnert ++ 2007 Andrew D Straw ++ 2007 John Travers, Robert Hetland ++ 2007-2008 Damian Eads ++ 2008 Tiziano Zito ++ Gary Strangman ++ 2010 Pauli Virtanen ++ 2010, 2011 Pim Schellart ++ 2009 Yosef Meller ++License: BSD-3-clause ++Comment: the files in scipy/io/tests/data/*.sav are IDL formatted test data files ++ and can be read with the functions in scipy/io/idl.py ++ they contain a EULA notice which is likely invalid and ignored by debian, see ++ also https://lists.debian.org/debian-legal/2014/06/msg00001.html ++ ++Files: doc/source/_static/scipy-mathjax/* ++Copyright: 2009-2017 The MathJax Consortium ++License: Apache-2.0 ++ ++Files: doc/source/_static/scipy.css ++Copyright: 2009-2017 The MathJax Consortium ++ 2019 Jonathan Neal "font-family: no-parens" ++Comments: ++ Code snippet "font-family: no-parens" retrieved ++ from https://codepen.io/jonneal/pen/bXLEdB (MIT) ++License: Apache-2.0+MIT ++ Code snippet "font-family: no-parens" under MIT licence: ++ Permission is hereby granted, free of charge, to any person obtaining ++ a copy of this software and associated documentation files (the ++ "Software"), to deal in the Software without restriction, including ++ without limitation the rights to use, copy, modify, merge, publish, ++ distribute, sublicense, and/or sell copies of the Software, and to ++ permit persons to whom the Software is furnished to do so, subject to ++ the following conditions: ++ . ++ The above copyright notice and this permission notice shall be ++ included in all copies or substantial portions of the Software. ++ . ++ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, ++ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF ++ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND ++ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS ++ BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ++ ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN ++ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE ++ SOFTWARE. ++ . ++ Other parts of scipy.css released under the standard SciPy Apache-2.0 ++ licence. ++ ++Files: doc/sphinxext/* doc/sphinxext/numpydoc/* ++Copyright: 2008 Stefan van der Walt , ++ Pauli Virtanen ++License: BSD-2-clause ++ ++Files: benchmarks/benchmarks/go_benchmark_functions/*.py ++Copyright: 2013 Andrea Gavana ++License: expat ++Comment: Functions for testing global optimizers, ++ forked from the AMPGO project, https://code.google.com/archive/p/ampgo ++ ++Files: scipy/fft/_pocketfft/* ++Copyright: 2010-2019 Max-Planck-Society ++License: BSD-3-clause ++ ++Files: scipy/fft/_pocketfft/pocketfft_hdronly.h ++Copyright: 2010-2019 Max-Planck-Society, Martin Reinecke ++ 2019 Peter Bell ++ 2003,2007-2014 Matteo Frigo, Massachusetts Institute of Technology ++License: BSD-3-clause ++ ++Files: scipy/linalg/src/id_dist/* ++Copyright: 2014, P.-G. Martinsson, V. Rokhlin, Y. Shkolnisky, M. Tygert ++License: BSD-3-clause ++ ++Files: scipy/misc/ascent.dat ++Copyright: public-domain ++License: public-domain ++ No permission whatsoever is needed to copy or use public domain works. Public ++ domain material is available for anyone to use for any purpose, private and ++ commercial. Public domain works can serve as the foundation for new creative ++ works. Public domain works can also be copied and distributed without any ++ permission or paying royalties ++ ++Files: scipy/ndimage/* ++Copyright: 2003-2005, Peter J. Verveer ++License: BSD-3-clause ++ ++Files: scipy/optimize/_highs/* ++Copyright: 2020 ERGO-Code ++License: Expat ++ ++Files: scipy/optimize/lbfgsb_src/*.f ++Copyright: 2011 Ciyou Zhu, Richard Byrd, and Jorge Nocedal ++License: BSD-generic ++ The version included here (in lbfgsb.f) is 3.0 (released April 25, 2011). It was ++ written by Ciyou Zhu, Richard Byrd, and Jorge Nocedal . It ++ carries the following condition for use: ++ . ++ """ ++ This software is freely available, but we expect that all publications ++ describing work using this software, or all commercial products using it, ++ quote at least one of the references given below. This software is released ++ under the BSD License. ++ . ++ References ++ * R. H. Byrd, P. Lu and J. Nocedal. A Limited Memory Algorithm for Bound ++ Constrained Optimization, (1995), SIAM Journal on Scientific and ++ Statistical Computing, 16, 5, pp. 1190-1208. ++ * C. Zhu, R. H. Byrd and J. Nocedal. L-BFGS-B: Algorithm 778: L-BFGS-B, ++ FORTRAN routines for large scale bound constrained optimization (1997), ++ ACM Transactions on Mathematical Software, 23, 4, pp. 550 - 560. ++ * J.L. Morales and J. Nocedal. L-BFGS-B: Remark on Algorithm 778: L-BFGS-B, ++ FORTRAN routines for large scale bound constrained optimization (2011), ++ ACM Transactions on Mathematical Software, 38, 1. ++ """ ++ ++Files: scipy/optimize/lbfgsb_src/lbfgsb.pyf ++Copyright: 2004 David M. Cooke ++ 2012 Joonas Paalasmaa ++License: Expat ++ ++Files: scipy/sparse/csgraph/_matching.pyx ++Copyright: 1987, A. Volgenant/Amsterdam School of Economics, ++ University of Amsterdam ++License: BSD-3-clause ++ ++Files: scipy/sparse/linalg/_dsolve/SuperLU/* ++Copyright: 2003, The Regents of the University of California, ++ through Lawrence Berkeley National Laboratory (subject to receipt ++ of any required approvals from U.S. Dept. of Energy) ++License: BSD-3-clause ++ ++Files: scipy/sparse/linalg/_eigen/arpack/* ++Copyright: 1996-2008 Rice University, ++ 1996-2008 D.C. Sorensen, R.B. Lehoucq, C. Yang, and K. Maschhoff ++ 2001-2011 Scilab Enterprises, Allan Cornet, Sylvestre Ledru ++ 2007 - Sébastien Fabbro (gentoo patch) ++ 2010 - Jordi Gutiérrez Hermoso (Octave patch) ++License: BSD-3-clause ++ ++Files: scipy/spatial/qhull_src/* ++Copyright: 1993-2015, The Geometry Center (University of Minnesota) ++ 1993-2015, C.B. Barber ++License: qhullbsd ++ This software includes Qhull from C.B. Barber and The Geometry Center. ++ Qhull is copyrighted as noted above. Qhull is free software and may ++ be obtained via http from www.qhull.org. It may be freely copied, modified, ++ and redistributed under the following conditions: ++ . ++ 1. All copyright notices must remain intact in all files. ++ . ++ 2. A copy of this text file must be distributed along with any copies ++ of Qhull that you redistribute; this includes copies that you have ++ modified, or copies of programs or other software products that ++ include Qhull. ++ . ++ 3. If you modify Qhull, you must include a notice giving the ++ name of the person performing the modification, the date of ++ modification, and the reason for such modification. ++ . ++ 4. When distributing modified versions of Qhull, or other software ++ products that include Qhull, you must provide notice that the original ++ source code may be obtained as noted above. ++ . ++ 5. There is no warranty or other guarantee of fitness for Qhull, it is ++ provided solely "as is". Bug reports or fixes may be sent to ++ qhull_bug@qhull.org; the authors may or may not act on them as ++ they desire. ++ ++Files: scipy/special/cephes/* ++Copyright: 1984, 1987, 1989, 2000 Stephen L. Moshier ++License: BSD-3-clause ++ ++Files: scipy/special/cephes/dd_*.c scipy/special/cephes/dd_*.h ++Copyright: 2003-2009, The Regents of the University of California, ++ through Lawrence Berkeley National Laboratory (subject to receipt of ++ any required approvals from U.S. Dept. of Energy) ++License: BSD-LBNL ++Comment: This work was supported by the Director, Office of Science, Division ++ of Mathematical, Information, and Computational Sciences of the ++ U.S. Department of Energy under contract numbers DE-AC03-76SF00098 and ++ DE-AC02-05CH11231. ++ ++Files: scipy/special/Faddeeva.cc scipy/special/Faddeeva.hh ++Copyright: 2012 Massachusetts Institute of Technology ++License: Expat ++ ++Files: scipy/_lib/_uarray/* ++Copyright: 2018, Quansight-Labs ++License: BSD-3-clause ++ ++Files: scipy/_lib/decorator.py ++Copyright: 2005-2015 Michele Simionato ++License: bsdlike ++ All rights reserved. ++ . ++ Redistributions of source code must retain the above copyright ++ notice, this list of conditions and the following disclaimer. ++ Redistributions in bytecode form must reproduce the above copyright ++ notice, this list of conditions and the following disclaimer in ++ the documentation and/or other materials provided with the ++ distribution. ++ . ++ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ++ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT ++ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR ++ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT ++ HOLDERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, ++ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, ++ BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS ++ OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ++ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR ++ TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE ++ USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH ++ DAMAGE. ++ ++License: Apache-2.0 ++ Licensed under the Apache License, Version 2.0 (the "License"); you may not ++ use this file except in compliance with the License. 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By copying, installing or otherwise using Python, Licensee ++ agrees to be bound by the terms and conditions of this License ++ Agreement. diff --cc debian/patches/Use-system-LBFGSB.patch index 00000000,00000000..eb59c05c new file mode 100644 --- /dev/null +++ b/debian/patches/Use-system-LBFGSB.patch @@@ -1,0 -1,0 +1,24 @@@ ++From: Gard Spreemann ++Date: Tue, 2 Apr 2019 11:25:26 +0200 ++Subject: Use system LBFGSB. ++ ++--- ++ scipy/optimize/setup.py | 4 +++- ++ 1 file changed, 3 insertions(+), 1 deletion(-) ++ ++Index: scipy/scipy/optimize/setup.py ++=================================================================== ++--- scipy.orig/scipy/optimize/setup.py 2022-02-11 18:56:19.803689586 +0100 +++++ scipy/scipy/optimize/setup.py 2022-02-11 18:56:19.803689586 +0100 ++@@ -63,8 +63,10 @@ ++ pre_build_hook = None ++ ++ lapack = combine_dict(lapack, numpy_nodepr_api) +++ lapack.setdefault('libraries', []) +++ lapack['libraries'].append('lbfgsb') ++ ++- sources = ['lbfgsb.pyf', 'lbfgsb.f', 'linpack.f', 'timer.f'] +++ sources = ['lbfgsb.pyf'] ++ ext = config.add_extension('_lbfgsb', ++ sources=[join('lbfgsb_src', x) ++ for x in sources], diff --cc debian/patches/build_sh4_FE.patch index 00000000,00000000..a1685a79 new file mode 100644 --- /dev/null +++ b/debian/patches/build_sh4_FE.patch @@@ -1,0 -1,0 +1,17 @@@ ++Index: scipy/scipy/special/_round.h ++=================================================================== ++--- scipy.orig/scipy/special/_round.h 2021-08-17 17:46:09.254650951 +0200 +++++ scipy/scipy/special/_round.h 2022-06-14 08:40:23.531748220 +0200 ++@@ -69,5 +69,12 @@ ++ ++ #endif ++ +++/* SH4 is not C99 compliant, see https://github.com/scipy/scipy/issues/15584 */ +++#ifndef FE_UPWARD +++#define FE_UPWARD -1 +++#endif +++#ifndef FE_DOWNWARD +++#define FE_DOWNWARD -1 +++#endif ++ ++ #endif /* _round.h */ diff --cc debian/patches/hppa-boost-long-double-config.patch index 00000000,00000000..724c0eb5 new file mode 100644 --- /dev/null +++ b/debian/patches/hppa-boost-long-double-config.patch @@@ -1,0 -1,0 +1,14 @@@ ++Index: scipy/scipy/_lib/boost/boost/math/tools/config.hpp ++=================================================================== ++--- scipy.orig/scipy/_lib/boost/boost/math/tools/config.hpp 2021-08-17 17:46:08.822648218 +0200 +++++ scipy/scipy/_lib/boost/boost/math/tools/config.hpp 2022-01-10 13:11:06.796416639 +0100 ++@@ -29,7 +29,8 @@ ++ #include ++ ++ #if (defined(__CYGWIN__) || defined(__FreeBSD__) || defined(__NetBSD__) || defined(__EMSCRIPTEN__)\ ++- || (defined(__hppa) && !defined(__OpenBSD__)) || (defined(__NO_LONG_DOUBLE_MATH) && (DBL_MANT_DIG != LDBL_MANT_DIG))) \ +++ || (defined(__hppa) && !defined(__OpenBSD__) && !defined(__linux__)) \ +++ || (defined(__NO_LONG_DOUBLE_MATH) && (DBL_MANT_DIG != LDBL_MANT_DIG))) \ ++ && !defined(BOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS) ++ # define BOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS ++ #endif diff --cc debian/patches/manage_tests.patch index 00000000,00000000..f2839fdf new file mode 100644 --- /dev/null +++ b/debian/patches/manage_tests.patch @@@ -1,0 -1,0 +1,332 @@@ ++Index: scipy/scipy/linalg/tests/test_decomp.py ++=================================================================== ++--- scipy.orig/scipy/linalg/tests/test_decomp.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/linalg/tests/test_decomp.py 2022-07-26 22:50:06.195812392 +0200 ++@@ -1909,6 +1909,7 @@ ++ tc2, zc2 = rsf2csf(tc, zc) ++ assert_array_almost_equal(zc2 @ tc2 @ zc2.conj().T, a) ++ +++ @pytest.mark.skip(reason="test fails, see https://github.com/scipy/scipy/issues/14517") ++ def test_sort(self): ++ a = [[4., 3., 1., -1.], ++ [-4.5, -3.5, -1., 1.], ++Index: scipy/scipy/linalg/tests/test_solvers.py ++=================================================================== ++--- scipy.orig/scipy/linalg/tests/test_solvers.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/linalg/tests/test_solvers.py 2022-07-26 22:50:06.195812392 +0200 ++@@ -306,7 +306,7 @@ ++ for ind, case in enumerate(cases): ++ _test_factory(case, min_decimal[ind]) ++ ++- +++@pytest.mark.skip(reason="test fails, see https://github.com/scipy/scipy/issues/14517") ++ def test_solve_discrete_are(): ++ ++ cases = [ ++Index: scipy/scipy/optimize/tests/test_optimize.py ++=================================================================== ++--- scipy.orig/scipy/optimize/tests/test_optimize.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/optimize/tests/test_optimize.py 2022-07-26 22:50:06.195812392 +0200 ++@@ -992,6 +992,7 @@ ++ ++ assert_allclose(v, self.func(self.solution), rtol=tol) ++ +++ @pytest.mark.skip(reason="contradictory: expected to fail but succeeds") ++ def test_minimize_l_bfgs_maxls(self): ++ # check that the maxls is passed down to the Fortran routine ++ sol = optimize.minimize(optimize.rosen, np.array([-1.2, 1.0]), ++Index: scipy/scipy/linalg/tests/test_lapack.py ++=================================================================== ++--- scipy.orig/scipy/linalg/tests/test_lapack.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/linalg/tests/test_lapack.py 2022-07-26 22:50:06.199812425 +0200 ++@@ -1032,7 +1032,7 @@ ++ ++ eig, _, info = syevd(a) ++ assert_(info == 0) ++- assert_allclose(eig, eig_gvd, rtol=1e-4) +++ assert_allclose(eig, eig_gvd, rtol=2e-4) ++ ++ ++ def test_hegst(): ++Index: scipy/scipy/interpolate/tests/test_fitpack.py ++=================================================================== ++--- scipy.orig/scipy/interpolate/tests/test_fitpack.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/interpolate/tests/test_fitpack.py 2022-07-26 22:50:06.199812425 +0200 ++@@ -6,6 +6,7 @@ ++ assert_almost_equal, assert_array_almost_equal) ++ from pytest import raises as assert_raises ++ import pytest +++import platform ++ from scipy._lib._testutils import check_free_memory ++ ++ from numpy import array, asarray, pi, sin, cos, arange, dot, ravel, sqrt, round ++@@ -353,6 +354,7 @@ ++ def test_order0_diff(self): ++ assert_raises(ValueError, splder, self.spl, 4) ++ +++ @pytest.mark.skipif(platform.machine().startswith('arm'), reason="test known to fail on armel") ++ def test_kink(self): ++ # Should refuse to differentiate splines with kinks ++ ++Index: scipy/scipy/optimize/tests/test_linprog.py ++=================================================================== ++--- scipy.orig/scipy/optimize/tests/test_linprog.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/optimize/tests/test_linprog.py 2022-07-26 22:50:06.199812425 +0200 ++@@ -13,6 +13,7 @@ ++ from scipy.linalg import LinAlgWarning ++ import scipy.sparse ++ import pytest +++import platform ++ ++ has_umfpack = True ++ try: ++@@ -527,6 +528,7 @@ ++ if do_presolve: ++ assert_equal(res.nit, 0) ++ +++ @pytest.mark.skipif(platform.machine().startswith('arm'), reason="test known to fail on armel") ++ def test_bounds_infeasible_2(self): ++ ++ # Test ill-valued bounds (lower inf, upper -inf) ++Index: scipy/scipy/special/tests/test_round.py ++=================================================================== ++--- scipy.orig/scipy/special/tests/test_round.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/special/tests/test_round.py 2022-07-26 22:50:06.199812425 +0200 ++@@ -1,8 +1,14 @@ ++ import numpy as np ++ import pytest +++import platform ++ ++ from scipy.special import _test_round ++ +++machine=platform.machine() +++if ( machine.startswith('arm') or +++ machine=='alpha' or +++ machine=='parisc64' ): +++ pytest.skip("rounding tests known to fail on armel, alpha and hppa", allow_module_level=True) ++ ++ @pytest.mark.skipif(not _test_round.have_fenv(), reason="no fenv()") ++ def test_add_round_up(): ++Index: scipy/scipy/stats/tests/test_stats.py ++=================================================================== ++--- scipy.orig/scipy/stats/tests/test_stats.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/stats/tests/test_stats.py 2022-07-26 22:50:06.199812425 +0200 ++@@ -18,6 +18,7 @@ ++ assert_array_less) ++ import pytest ++ from pytest import raises as assert_raises +++import platform ++ import numpy.ma.testutils as mat ++ from numpy import array, arange, float32, float64, power ++ import numpy as np ++@@ -465,6 +466,7 @@ ++ [1] 1.701815e-09 ++ """ ++ +++ @pytest.mark.skipif(platform.machine()=='ppc', reason="test known to fail on powerpc") ++ def test_basic(self): ++ fisher_exact = stats.fisher_exact ++ ++@@ -5736,14 +5738,17 @@ ++ with pytest.raises(ValueError, match='Invalid array input'): ++ stats.gstd('This should fail as it can not be cast to an array.') ++ +++ @pytest.mark.skipif(platform.machine().startswith('arm'), reason="test known to fail on armel") ++ def test_raises_value_error_zero_entry(self): ++ with pytest.raises(ValueError, match='Non positive value'): ++ stats.gstd(np.append(self.array_1d, [0])) ++ +++ @pytest.mark.skipif(platform.machine().startswith('arm'), reason="test known to fail on armel") ++ def test_raises_value_error_negative_entry(self): ++ with pytest.raises(ValueError, match='Non positive value'): ++ stats.gstd(np.append(self.array_1d, [-1])) ++ +++ @pytest.mark.skipif(platform.machine().startswith('arm'), reason="test known to fail on armel") ++ def test_raises_value_error_inf_entry(self): ++ with pytest.raises(ValueError, match='Infinite value'): ++ stats.gstd(np.append(self.array_1d, [np.inf])) ++Index: scipy/scipy/signal/tests/test_spectral.py ++=================================================================== ++--- scipy.orig/scipy/signal/tests/test_spectral.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/signal/tests/test_spectral.py 2022-07-26 22:50:06.199812425 +0200 ++@@ -4,6 +4,7 @@ ++ assert_array_almost_equal_nulp, suppress_warnings) ++ import pytest ++ from pytest import raises as assert_raises +++import platform ++ ++ from scipy import signal ++ from scipy.fft import fftfreq ++@@ -94,6 +95,7 @@ ++ assert_raises(ValueError, periodogram, np.zeros(4, np.complex128), ++ scaling='foo') ++ +++ @pytest.mark.skipif(platform.machine().startswith('i686'), reason="test known to fail on i386 linux and hurd") ++ def test_nd_axis_m1(self): ++ x = np.zeros(20, dtype=np.float64) ++ x = x.reshape((2,1,10)) ++@@ -104,6 +106,7 @@ ++ f0, p0 = periodogram(x[0,0,:]) ++ assert_array_almost_equal_nulp(p0[np.newaxis,:], p[1,:], 60) ++ +++ @pytest.mark.skipif(platform.machine().startswith('i686'), reason="test known to fail on i386 linux and hurd") ++ def test_nd_axis_0(self): ++ x = np.zeros(20, dtype=np.float64) ++ x = x.reshape((10,2,1)) ++Index: scipy/scipy/sparse/linalg/_isolve/tests/test_iterative.py ++=================================================================== ++--- scipy.orig/scipy/sparse/linalg/_isolve/tests/test_iterative.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/sparse/linalg/_isolve/tests/test_iterative.py 2022-07-26 22:50:06.199812425 +0200 ++@@ -10,6 +10,7 @@ ++ assert_, assert_allclose, suppress_warnings) ++ import pytest ++ from pytest import raises as assert_raises +++import platform ++ ++ from numpy import zeros, arange, array, ones, eye, iscomplexobj ++ from scipy.linalg import norm ++@@ -468,6 +469,7 @@ ++ pytest.param(bicgstab, marks=pytest.mark.xfail), ++ pytest.param(gcrotmk, marks=pytest.mark.xfail), ++ pytest.param(tfqmr, marks=pytest.mark.xfail)]) +++@pytest.mark.skipif(platform.machine().startswith('i686'), reason="needs tol=9 not 5 on i386 (linux and hurd)") ++ def test_maxiter_worsening(solver): ++ # Check error does not grow (boundlessly) with increasing maxiter. ++ # This can occur due to the solvers hitting close to breakdown, ++Index: scipy/scipy/spatial/tests/test_distance.py ++=================================================================== ++--- scipy.orig/scipy/spatial/tests/test_distance.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/spatial/tests/test_distance.py 2022-07-26 22:50:06.203812457 +0200 ++@@ -1155,7 +1155,7 @@ ++ def test_pdist_jensenshannon_iris(self): ++ if _is_32bit(): ++ # Test failing on 32-bit Linux on Azure otherwise, see gh-12810 ++- eps = 1.5e-10 +++ eps = 2.5e-10 ++ else: ++ eps = 1e-12 ++ ++Index: scipy/scipy/spatial/transform/tests/test_rotation.py ++=================================================================== ++--- scipy.orig/scipy/spatial/transform/tests/test_rotation.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/spatial/transform/tests/test_rotation.py 2022-07-26 22:50:06.203812457 +0200 ++@@ -1,4 +1,5 @@ ++ import pytest +++import platform ++ ++ import numpy as np ++ from numpy.testing import assert_equal, assert_array_almost_equal ++@@ -1115,9 +1116,14 @@ ++ ++ ++ def test_align_vectors_single_vector(): +++ if platform.machine().startswith("i686"): +++ # Test failing on 32-bit i386 (linux and hurd) +++ eps = 3e-8 +++ else: +++ eps = 1e-16 ++ with pytest.warns(UserWarning, match="Optimal rotation is not"): ++ r_estimate, rmsd = Rotation.align_vectors([[1, -1, 1]], [[1, 1, -1]]) ++- assert_allclose(rmsd, 0, atol=1e-16) +++ assert_allclose(rmsd, 0, atol=eps) ++ ++ ++ def test_align_vectors_invalid_input(): ++Index: scipy/scipy/io/arff/tests/test_arffread.py ++=================================================================== ++--- scipy.orig/scipy/io/arff/tests/test_arffread.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/io/arff/tests/test_arffread.py 2022-07-26 22:50:06.203812457 +0200 ++@@ -11,6 +11,7 @@ ++ assert_array_equal, assert_equal, assert_) ++ import pytest ++ from pytest import raises as assert_raises +++import platform ++ ++ from scipy.io.arff import loadarff ++ from scipy.io.arff._arffread import read_header, ParseArffError ++@@ -97,7 +98,12 @@ ++ for i in ['yop', 'yap']: ++ assert_array_almost_equal(data[i], expect_missing[i]) ++ ++- +++machine=platform.machine() +++@pytest.mark.skipif(machine=='s390x' +++ or machine.startswith('ppc') +++ or machine=='parisc64' +++ or machine=='sparc64', +++ reason="test known to fail on s390x, powerpc, ppc64, hppa and sparc64") ++ class TestNoData: ++ def test_nodata(self): ++ # The file nodata.arff has no data in the @DATA section. ++Index: scipy/scipy/linalg/tests/test_interpolative.py ++=================================================================== ++--- scipy.orig/scipy/linalg/tests/test_interpolative.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/linalg/tests/test_interpolative.py 2022-07-26 22:50:06.203812457 +0200 ++@@ -36,6 +36,7 @@ ++ assert_array_equal) ++ import pytest ++ from pytest import raises as assert_raises +++import platform ++ import sys ++ _IS_32BIT = (sys.maxsize < 2**32) ++ ++@@ -146,6 +147,7 @@ ++ norm_2_est = pymatrixid.estimate_spectral_norm(A) ++ assert_allclose(norm_2_est, s[0], rtol=1e-6, atol=1e-8) ++ +++ @pytest.mark.skipif(platform.machine().startswith('arm'), reason="test known to fail on armhf") ++ def test_estimate_spectral_norm_diff(self, A): ++ B = A.copy() ++ B[:, 0] *= 1.2 ++Index: scipy/scipy/fft/tests/test_fftlog.py ++=================================================================== ++--- scipy.orig/scipy/fft/tests/test_fftlog.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/fft/tests/test_fftlog.py 2022-07-26 22:50:06.203812457 +0200 ++@@ -2,6 +2,7 @@ ++ import numpy as np ++ from numpy.testing import assert_allclose ++ import pytest +++import platform ++ ++ from scipy.fft._fftlog import fht, ifht, fhtoffset ++ from scipy.special import poch ++@@ -99,6 +100,7 @@ ++ assert_allclose(a, a_) ++ ++ +++@pytest.mark.skipif(platform.machine().startswith('mips64'), reason="test known to fail on mips64el") ++ def test_fht_special_cases(): ++ rng = np.random.RandomState(3491349965) ++ ++Index: scipy/scipy/sparse/csgraph/tests/test_shortest_path.py ++=================================================================== ++--- scipy.orig/scipy/sparse/csgraph/tests/test_shortest_path.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/sparse/csgraph/tests/test_shortest_path.py 2022-07-26 22:50:06.203812457 +0200 ++@@ -7,6 +7,7 @@ ++ NegativeCycleError) ++ import scipy.sparse ++ import pytest +++import platform ++ ++ directed_G = np.array([[0, 3, 3, 0, 0], ++ [0, 0, 0, 2, 4], ++@@ -314,6 +315,7 @@ ++ shortest_path(G, method=method) ++ ++ +++@pytest.mark.skipif(platform.machine().startswith('mips64'), reason="test known to fail on mips64el") ++ def test_NaN_warnings(): ++ with warnings.catch_warnings(record=True) as record: ++ shortest_path(np.array([[0, 1], [np.nan, 0]])) ++Index: scipy/scipy/stats/tests/test_distributions.py ++=================================================================== ++--- scipy.orig/scipy/stats/tests/test_distributions.py 2022-07-26 22:50:06.207812491 +0200 +++++ scipy/scipy/stats/tests/test_distributions.py 2022-07-26 22:50:06.203812457 +0200 ++@@ -2261,6 +2261,7 @@ ++ assert_(np.isfinite(s)) ++ assert_(not np.isfinite(k)) ++ +++ @pytest.mark.skipif(platform.machine().startswith('mips64'), reason="test known to fail on mips64el") ++ def test_moments_warnings(self): ++ # no warnings should be generated for dfd = 2, 4, 6, 8 (div by zero) ++ with warnings.catch_warnings(): diff --cc debian/patches/pythran_type_PR16646.patch index 00000000,00000000..5923cefa new file mode 100644 --- /dev/null +++ b/debian/patches/pythran_type_PR16646.patch @@@ -1,0 -1,0 +1,82 @@@ ++From 82ad101e8a9317a2c5d7640b64d31c3ecb53b022 Mon Sep 17 00:00:00 2001 ++From: serge-sans-paille ++Date: Mon, 29 Aug 2022 08:15:49 +0200 ++Subject: [PATCH] WIP ++ ++--- ++ scipy/optimize/_group_columns.py | 8 ++++---- ++ scipy/signal/_max_len_seq.py | 5 +++-- ++ scipy/signal/_max_len_seq_inner.py | 4 ++-- ++ scipy/sparse/_sputils.py | 3 ++- ++ 4 files changed, 11 insertions(+), 9 deletions(-) ++ ++Index: scipy/scipy/optimize/_group_columns.py ++=================================================================== ++--- scipy.orig/scipy/optimize/_group_columns.py 2022-09-07 09:51:42.992170041 +0200 +++++ scipy/scipy/optimize/_group_columns.py 2022-09-07 09:51:42.992170041 +0200 ++@@ -52,10 +52,10 @@ ++ return groups ++ ++ ++-#pythran export group_sparse(int, int, intc[], intc[]) ++-#pythran export group_sparse(int, int, int[], int[]) ++-#pythran export group_sparse(int, int, intc[::], intc[::]) ++-#pythran export group_sparse(int, int, int[::], int[::]) +++#pythran export group_sparse(int, int, int32[], int32[]) +++#pythran export group_sparse(int, int, int64[], int64[]) +++#pythran export group_sparse(int, int, int32[::], int32[::]) +++#pythran export group_sparse(int, int, int64[::], int64[::]) ++ def group_sparse(m, n, indices, indptr): ++ groups = -np.ones(n, dtype=np.intp) ++ current_group = 0 ++Index: scipy/scipy/signal/_max_len_seq.py ++=================================================================== ++--- scipy.orig/scipy/signal/_max_len_seq.py 2022-09-07 09:51:42.992170041 +0200 +++++ scipy/scipy/signal/_max_len_seq.py 2022-09-07 09:51:42.992170041 +0200 ++@@ -101,14 +101,15 @@ ++ >>> plt.show() ++ ++ """ +++ taps_dtype = np.int32 if np.intp().itemsize == 4 else np.int64 ++ if taps is None: ++ if nbits not in _mls_taps: ++ known_taps = np.array(list(_mls_taps.keys())) ++ raise ValueError('nbits must be between %s and %s if taps is None' ++ % (known_taps.min(), known_taps.max())) ++- taps = np.array(_mls_taps[nbits], np.intp) +++ taps = np.array(_mls_taps[nbits], taps_dtype) ++ else: ++- taps = np.unique(np.array(taps, np.intp))[::-1] +++ taps = np.unique(np.array(taps, taps_dtype))[::-1] ++ if np.any(taps < 0) or np.any(taps > nbits) or taps.size < 1: ++ raise ValueError('taps must be non-empty with values between ' ++ 'zero and nbits (inclusive)') ++Index: scipy/scipy/signal/_max_len_seq_inner.py ++=================================================================== ++--- scipy.orig/scipy/signal/_max_len_seq_inner.py 2022-09-07 09:51:42.992170041 +0200 +++++ scipy/scipy/signal/_max_len_seq_inner.py 2022-09-07 09:51:42.992170041 +0200 ++@@ -3,8 +3,8 @@ ++ ++ import numpy as np ++ ++-#pythran export _max_len_seq_inner(intp[], int8[], int, int, int8[]) ++-#pythran export _max_len_seq_inner(int[], int8[], int, int, int8[]) +++#pythran export _max_len_seq_inner(int32[], int8[], int, int, int8[]) +++#pythran export _max_len_seq_inner(int64[], int8[], int, int, int8[]) ++ ++ # Fast inner loop of max_len_seq. ++ def _max_len_seq_inner(taps, state, nbits, length, seq): ++Index: scipy/scipy/sparse/_sputils.py ++=================================================================== ++--- scipy.orig/scipy/sparse/_sputils.py 2022-09-07 09:51:42.992170041 +0200 +++++ scipy/scipy/sparse/_sputils.py 2022-09-07 09:51:42.992170041 +0200 ++@@ -153,7 +153,8 @@ ++ int32min = np.iinfo(np.int32).min ++ int32max = np.iinfo(np.int32).max ++ ++- dtype = np.intc +++ # not using intc directly due to misinteractions with pythran +++ dtype = np.int32 if np.intc().itemsize == 4 else np.int64 ++ if maxval is not None: ++ if maxval > int32max: ++ dtype = np.int64 diff --cc debian/patches/qhull-lfs.patch index 00000000,00000000..5f7aced7 new file mode 100644 --- /dev/null +++ b/debian/patches/qhull-lfs.patch @@@ -1,0 -1,0 +1,26 @@@ ++From: Julian Taylor ++Date: Mon, 12 Oct 2015 15:17:23 -0700 ++Subject: enable large file support ++ ++ probably not needed as the file open api of qhull is not available in python ++Forwarded: no ++ ++Patch-Name: qhull-lfs.patch ++--- ++ scipy/spatial/setup.py | 3 +++ ++ 1 file changed, 3 insertions(+) ++ ++Index: scipy/scipy/spatial/setup.py ++=================================================================== ++--- scipy.orig/scipy/spatial/setup.py 2022-02-11 18:59:49.481435693 +0100 +++++ scipy/scipy/spatial/setup.py 2022-02-11 18:59:49.477435659 +0100 ++@@ -53,6 +53,9 @@ ++ config.add_extension('_qhull', ++ sources=['_qhull.c', 'qhull_misc.c'] + qhull_src, ++ **cfg) +++ cfg.setdefault('define_macros', []).append(('_FILE_OFFSET_BITS','64')) +++ cfg.setdefault('define_macros', []).append(('_LARGEFILE_SOURCE','1')) +++ cfg.setdefault('define_macros', []).append(('_LARGEFILE64_SOURCE','1')) ++ ++ # cKDTree ++ ckdtree_src = ['query.cxx', diff --cc debian/patches/series index 00000000,00000000..2a539a84 new file mode 100644 --- /dev/null +++ b/debian/patches/series @@@ -1,0 -1,0 +1,7 @@@ ++use_local_mathjax.patch ++qhull-lfs.patch ++Use-system-LBFGSB.patch ++hppa-boost-long-double-config.patch ++manage_tests.patch ++build_sh4_FE.patch ++pythran_type_PR16646.patch diff --cc debian/patches/use_local_mathjax.patch index 00000000,00000000..fc0870ef new file mode 100644 --- /dev/null +++ b/debian/patches/use_local_mathjax.patch @@@ -1,0 -1,0 +1,22 @@@ ++From: SVN-Git Migration ++Date: Mon, 12 Oct 2015 15:17:20 -0700 ++Subject: use_local_mathjax ++ ++Setting mathjax_path variable to use the local mathjax javascript library ++Patch-Name: use_local_mathjax.patch ++--- ++ doc/source/conf.py | 3 ++- ++ 1 file changed, 2 insertions(+), 1 deletion(-) ++ ++Index: scipy/doc/source/conf.py ++=================================================================== ++--- scipy.orig/doc/source/conf.py 2022-06-13 17:46:20.658259519 +0200 +++++ scipy/doc/source/conf.py 2022-06-13 17:46:20.650259451 +0200 ++@@ -224,6 +224,7 @@ ++ htmlhelp_basename = 'scipy' ++ ++ mathjax_path = "scipy-mathjax/MathJax.js?config=scipy-mathjax" +++mathjax_path='/usr/share/javascript/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML' ++ ++ ++ # ----------------------------------------------------------------------------- diff --cc debian/python-scipy-doc.doc-base index 00000000,00000000..0490e435 new file mode 100644 --- /dev/null +++ b/debian/python-scipy-doc.doc-base @@@ -1,0 -1,0 +1,14 @@@ ++Document: python-scipy-doc ++Title: SciPy Manual ++Author: The SciPy community ++Abstract: This guide is intended as an introductory overview of SciPy ++ and explains how to install and make use of the most important ++ features of SciPy. ++ There is also a tutorial and an API reference manual which details ++ functions, modules, and objects included in SciPy, describing what ++ they are and what they do. ++Section: Programming/Python ++ ++Format: HTML ++Index: /usr/share/doc/python-scipy-doc/html/index.html ++Files: /usr/share/doc/python-scipy-doc/html/* diff --cc debian/python-scipy-doc.docs index 00000000,00000000..8137b041 new file mode 100644 --- /dev/null +++ b/debian/python-scipy-doc.docs @@@ -1,0 -1,0 +1,1 @@@ ++doc/build/html diff --cc debian/python-scipy-doc.lintian-overrides index 00000000,00000000..91bb3f73 new file mode 100644 --- /dev/null +++ b/debian/python-scipy-doc.lintian-overrides @@@ -1,0 -1,0 +1,1 @@@ ++bogus-mail-host-in-debian-changelog Debian/i386 Build Daemon * diff --cc debian/python3-scipy.lintian-overrides index 00000000,00000000..91bb3f73 new file mode 100644 --- /dev/null +++ b/debian/python3-scipy.lintian-overrides @@@ -1,0 -1,0 +1,1 @@@ ++bogus-mail-host-in-debian-changelog Debian/i386 Build Daemon * diff --cc debian/rules index 00000000,00000000..da61f2fb new file mode 100755 --- /dev/null +++ b/debian/rules @@@ -1,0 -1,0 +1,101 @@@ ++#!/usr/bin/make -f ++ ++export PYBUILD_NAME=scipy ++ ++include /usr/share/dpkg/architecture.mk ++ ++unexport LDFLAGS ++export FFLAGS="-fPIC" ++export ATLAS=None ++export PATH := $(CURDIR)/debian/extra_bin:$(PATH) ++export SCIPY_USE_PYTHRAN=0 ++ ++PY3VERS:= $(shell py3versions -v -s) ++PY3_DEFAULT:= $(shell py3versions -dv) ++TMPDIR := $(CURDIR)/build/tmp ++BASE=$(shell pwd)/debian ++ ++ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) ++ export NPY_NUM_BUILD_JOBS = $(patsubst parallel=%,%,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) ++endif ++ ++export SCIPY_USE_PYTHRAN = $(shell if dpkg-query -s python3-pythran >/dev/null 2>/dev/null; then echo 1; else echo 0; fi ) ++ ++# stats/tests/test_continuous_basic.py::test_cont_basic[500-200-ncf-arg74] test fails with IntegrationWarning ++# https://github.com/scipy/scipy/issues/14519 ++SKIP_TEST_LIST += "test_cont_basic[500-200-ncf-arg74]" ++ ++# linalg/tests/test_decomp.py started segfaulting on armel ++ifneq (,$(findstring $(DEB_HOST_ARCH), armel)) ++ SKIP_TEST_LIST += test_decomp test_random_exact ++endif ++ ++# Bug#1017864 test_kolmogorov.py segfaults on i386 (including hurd) ++SKIP_KOLMOGOROV_ARCH_LIST := i386 hurd-i386 ++ifneq (,$(findstring $(space)$(DEB_HOST_ARCH)$(space), $(space)$(SKIP_KOLMOGOROV_ARCH_LIST)$(space))) ++ SKIP_TEST_LIST += TestSmirnovp ++endif ++ ++# integrate/_ivp/tests/test_ivp.py fail on mips64el ++# see https://github.com/scipy/scipy/issues/16883 ++ifneq (,$(findstring $(DEB_HOST_ARCH), mips64el)) ++ SKIP_TEST_LIST += test_first_step test_classes ++endif ++ ++ifneq (,$(findstring $(DEB_HOST_ARCH), hppa)) ++ SKIP_TEST_LIST += test_nodata test_cont_basic[500-200-semicircular-arg89] ++endif ++ ++# powerpc: failures in stats/tests/test_stats.py: overflow encountered in _hypergeom_* ++ifneq (,$(findstring $(DEB_HOST_ARCH), powerpc)) ++ SKIP_TEST_LIST += test_hypergeom_cdf test_hypergeom_sf test_nch_hypergeom test_precision test_precise test_less_greater ++endif ++ ++%: ++ dh $@ --with python3,sphinxdoc --buildsystem=pybuild ++ ++execute_after_dh_auto_clean: ++ rm -rf build .pybuild ++ -find $(CURDIR) -name __pycache__ -type d -exec rm -rf {} + ++ -rm -rf doc/source/fontList* ++ -rm -rf doc/source/reference/generated ++ -rm -rf doc/build ++ ++execute_before_dh_auto_configure: ++ echo "Building scipy with SCIPY_USE_PYTHRAN=$(SCIPY_USE_PYTHRAN)" ++ ++execute_before_dh_installdocs-indep: ++ (export MPLCONFIGDIR=. ; \ ++ PYLIBPATH=`pybuild --print build_dir -p$(PY3_DEFAULT) | awk '{print $$3}'`; \ ++ echo "building docs using PYLIBPATH=$$PYLIBPATH"; \ ++ PYTHONPATH=$$PYLIBPATH make -C doc html PYTHONPATH=$$PYLIBPATH PYVER=3) ++ ++override_dh_auto_test: ++ echo "Build-time tests will be run after the installation dir is installed" ++ ++ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) ++execute_after_dh_auto_install: ++ set -e; \ ++ SKIP_TESTS=""; \ ++ list_initialised=0; \ ++ for t in $(SKIP_TEST_LIST); do \ ++ if [ $${list_initialised} = 0 ]; then \ ++ SKIP_TESTS=$$t; \ ++ list_initialised=1; \ ++ else \ ++ SKIP_TESTS="$${SKIP_TESTS} or $$t"; \ ++ fi; \ ++ done; \ ++ if [ "x$${SKIP_TESTS}" != "x" ]; then \ ++ SKIP_TESTS="not ( $${SKIP_TESTS} )"; \ ++ fi; \ ++ echo "skipping tests: $${SKIP_TESTS}"; \ ++ for py in $(PY3VERS); do \ ++ PYLIBPATH=`pybuild --print build_dir -p$$py | awk '{print $$3}'`; \ ++ PYTHONPATH=$$PYLIBPATH python$$py \ ++ $(CURDIR)/runtests.py -n -- -k "$${SKIP_TESTS}"; \ ++ done ++endif ++ ++execute_after_dh_install: ++ dh_numpy3 diff --cc debian/source/format index 00000000,00000000..163aaf8d new file mode 100644 --- /dev/null +++ b/debian/source/format @@@ -1,0 -1,0 +1,1 @@@ ++3.0 (quilt) diff --cc debian/source/lintian-overrides index 00000000,00000000..aed80725 new file mode 100644 --- /dev/null +++ b/debian/source/lintian-overrides @@@ -1,0 -1,0 +1,2 @@@ ++obsolete-url-in-packaging https://code.google.com/archive/p/ampgo [debian/copyright] ++source-contains-prebuilt-windows-binary [scipy/io/tests/data/fortran-si4-11x1x10.dat] diff --cc debian/tests/atlas index 00000000,00000000..6d65db32 new file mode 120000 --- /dev/null +++ b/debian/tests/atlas @@@ -1,0 -1,0 +1,1 @@@ ++openblas diff --cc debian/tests/blis index 00000000,00000000..6d65db32 new file mode 120000 --- /dev/null +++ b/debian/tests/blis @@@ -1,0 -1,0 +1,1 @@@ ++openblas diff --cc debian/tests/control index 00000000,00000000..cb0253ff new file mode 100644 --- /dev/null +++ b/debian/tests/control @@@ -1,0 -1,0 +1,22 @@@ ++Tests: python3 ++Depends: build-essential, python3-scipy, python3-pytest, python3-all, python3-all-dev, python3-pil ++ ++# short test on all python versions including debug ++Tests: python3-smoke ++Depends: python3-scipy, python3-pytest, python3-all ++ ++#needs root for update-alternatives, build-essential for libc6-dev (ctype libm.so) ++Tests: openblas ++Restrictions: needs-root ++Depends: build-essential, python3-scipy, python3-pytest, python3, libopenblas-dev ++Architecture: amd64 arm64 armhf i386 powerpc ppc64el ppc64 kfreebsd-i386 kfreebsd-amd64 mips64el riscv64 sparc64 s390x ++ ++#needs root for update-alternatives, build-essential for libc6-dev (ctype libm.so) ++Tests: atlas ++Restrictions: needs-root ++Depends: build-essential, python3-scipy, python3-pytest, python3, libatlas-base-dev ++ ++#needs root for update-alternatives, build-essential for libc6-dev (ctype libm.so) ++Tests: blis ++Restrictions: needs-root ++Depends: build-essential, python3-scipy, python3-pytest, python3, libblis-dev diff --cc debian/tests/openblas index 00000000,00000000..7cdc4cb0 new file mode 100755 --- /dev/null +++ b/debian/tests/openblas @@@ -1,0 -1,0 +1,21 @@@ ++#!/bin/sh ++set -efu ++ma=$(dpkg-architecture -qDEB_HOST_MULTIARCH) ++blaslib=$(update-alternatives --list libblas.so.3-$ma | grep -m1 $(basename $0)) ++update-alternatives --set libblas.so.3-$ma $blaslib ++ ++echo "=== testing "$(basename $0)" ===" ++ ++# one python is enough ++PYS=${PYS:-"$(py3versions -d 2>/dev/null)"} ++ ++#test only modules that link against libblas ++PYS=$PYS TESTPKG=odr debian/tests/python3 ++PYS=$PYS TESTPKG=optimize debian/tests/python3 ++PYS=$PYS TESTPKG=spatial debian/tests/python3 ++PYS=$PYS TESTPKG=special debian/tests/python3 ++PYS=$PYS TESTPKG=cluster debian/tests/python3 ++PYS=$PYS TESTPKG=integrate debian/tests/python3 ++PYS=$PYS TESTPKG=interpolate debian/tests/python3 ++PYS=$PYS TESTPKG=sparse debian/tests/python3 ++PYS=$PYS TESTPKG=linalg debian/tests/python3 diff --cc debian/tests/python3 index 00000000,00000000..bfd5684f new file mode 100755 --- /dev/null +++ b/debian/tests/python3 @@@ -1,0 -1,0 +1,108 @@@ ++#!/bin/bash ++set -efu ++ ++PYS=${PYS:-"$(py3versions -s 2>/dev/null)"} ++TESTMODE=${TESTMODE:-full} ++TESTPKG=${TESTPKG:-} ++export HOME=$AUTOPKGTEST_TMP ++export TMPDIR=$AUTOPKGTEST_TMP ++ ++SUBMODULE= ++if [ "x${TESTPKG}" != "x" ]; then ++ SUBMODULE="-s ${TESTPKG}"; ++fi ++ ++MODE= ++if [ "x${TESTMODE}" != "xfull" ]; then ++ MODE="-m full"; ++fi ++ ++# some tests are expected to fail ++# so list tests to skip in array variable SKIP_TEST_LIST ++declare -a SKIP_TEST_LIST ++ ++# some arches fail some tests with specific BLAS implementations ++# Bug#1003880: skip test_hermitian_modes with blis on i386 (sparse.linalg._eigen.arpack) ++arch=$(dpkg-architecture -qDEB_HOST_ARCH) ++ma=$(dpkg-architecture -qDEB_HOST_MULTIARCH) ++DEB_HOST_ARCH_BITS=$(dpkg-architecture -q DEB_HOST_ARCH_BITS) ++if [ "$arch" = "arm64" ] && update-alternatives --query libblas.so.3-$ma | sed -n "/^Value:/p" | grep -q blis ; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_atol[cgs]) ++fi ++if [ "$arch" = "i386" ] && update-alternatives --query libblas.so.3-$ma | sed -n "/^Value:/p" | grep -q blis ; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_hermitian_modes test_complex_nonsymmetric_modes test_standard_nonsymmetric_starting_vector test_general_nonsymmetric_starting_vector test_svd_linop test_complex) ++fi ++if [ "$arch" = "armhf" ] && update-alternatives --query libblas.so.3-$ma | sed -n "/^Value:/p" | grep -q openblas ; then ++ # test_large_rank_deficient in scipy/optimize/tests/test_lsq_linear.py times out or segfaults with openblas on armhf ++ # and other TestTRF tests time out ++ # test_disp in optimize/tests/test_linprog.py times out with openblas on armhf ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_large_rank_deficient TestTRF test_disp test_m_eq_n_sparse test_magic_square2 test_numerical_jac test_with_bounds test_bvp test_solver_selection) ++fi ++if [ "$arch" = "armhf" ] && update-alternatives --query libblas.so.3-$ma | sed -n "/^Value:/p" | grep -q atlas ; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_aligned_mem) ++fi ++# segfaults in test_lsq_linear.py::TestBVLS ++# see https://ci.debian.net/data/autopkgtest/testing/armhf/s/scipy/25114019/log.gz ++if [ "$arch" = "armhf" ] && update-alternatives --query libblas.so.3-$ma | sed -n "/^Value:/p" | grep -q blis ; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_large_rank_deficient) ++fi ++ ++if [ "$arch" = "armel" ]; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_aligned_mem test_decomp) ++fi ++ ++# Bug#1017864 test_kolmogorov.py segfaults on i386 (including hurd) ++if [ "$arch" = "i386" ] || [ "$arch" = "hurd-i386" ]; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} TestSmirnovp) ++fi ++ ++# integrate/_ivp/tests/test_ivp.py fail on mips64el ++# see https://github.com/scipy/scipy/issues/16883 ++if [ "$arch" = "mips64el" ]; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_first_step test_classes) ++fi ++ ++if [ "$arch" = "ppc64el" ]; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_svds_parameter_tol) ++fi ++if [ "$arch" = "ppc64el" ] && update-alternatives --query libblas.so.3-$ma | sed -n "/^Value:/p" | grep -q atlas ; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_bug_6139 test_svd_v0 test_svd_random_state test_svd_random_state_2) ++fi ++if [ "$arch" = "s390x" ] && update-alternatives --query libblas.so.3-$ma | sed -n "/^Value:/p" | grep -q atlas ; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_bug_6139 test_solver_select) ++fi ++ ++# avoid segfaults and other failures on riscv64 ++if [ "$arch" = "riscv64" ]; then ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_kmeans2_high_dim test_krandinit test_kmeans2_kpp_high_dim) ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_banded_ode_solvers test_singular_term test_vode test_zvode test_odeint_banded_jacobian test_odeint_banded_jac) ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_vector test_iterative_refinements_dense) ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_sine_weighted_finite test_sine_weighted_infinite test_cosine_weighted_infinite) ++ SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_scalar test_integrate_ppoly test_compare_dense_and_sparse) ++fi ++ ++ ++# stats/tests/test_continuous_basic.py::test_cont_basic[500-200-ncf-arg74] test fails with IntegrationWarning ++# https://github.com/scipy/scipy/issues/14519 ++SKIP_TEST_LIST=(${SKIP_TEST_LIST[@]} test_cont_basic[500-200-ncf-arg74]) ++ ++SKIP_TESTS="" ++list_initialised=0 ++for t in ${SKIP_TEST_LIST[@]}; do ++ if [ ${list_initialised} = 0 ]; then ++ SKIP_TESTS=$t ++ list_initialised=1 ++ else ++ SKIP_TESTS="${SKIP_TESTS} or $t" ++ fi ++done ++if [ "x${SKIP_TESTS}" != "x" ]; then ++ SKIP_TESTS="not ( ${SKIP_TESTS} )" ++fi ++echo "skipping tests with SKIP_TEST_LIST=${SKIP_SKIP_TEST_LIST[@]}" ++ ++for py in $PYS; do ++ echo "=== Testing: $py $TESTPKG ===" ++ $py runtests.py -n -v ${MODE} ${SUBMODULE} -- -k "${SKIP_TESTS}" 2>&1 ++ echo "=== Done: $py $TESTPKG ===" ++done diff --cc debian/tests/python3-smoke index 00000000,00000000..2184d577 new file mode 100755 --- /dev/null +++ b/debian/tests/python3-smoke @@@ -1,0 -1,0 +1,18 @@@ ++#!/bin/sh ++set -efu ++echo "=== testing "$(basename $0)" ===" ++ ++PYS=${PYS:-"$(py3versions -s 2>/dev/null)"} ++TESTMODE=${TESTMODE:-full} ++TESTPKG=${TESTPKG:-scipy} ++export HOME=$AUTOPKGTEST_TMP ++export TMPDIR=$AUTOPKGTEST_TMP ++ ++cd "$AUTOPKGTEST_TMP" ++ ++# test imports and a fast test ++for py in $PYS; do ++ echo "=== Testing: $py $TESTPKG ===" ++ $py -c "import scipy.interpolate, scipy.stats, scipy.ndimage; scipy.interpolate.test()" 2>&1 ++ echo "=== Done: $py $TESTPKG ===" ++done diff --cc debian/upstream/metadata index 00000000,00000000..63aa7b52 new file mode 100644 --- /dev/null +++ b/debian/upstream/metadata @@@ -1,0 -1,0 +1,15 @@@ ++--- ++Bug-Database: https://github.com/scipy/scipy/issues ++Bug-Submit: https://github.com/scipy/scipy/issues/new ++Repository: https://github.com/scipy/scipy.git ++Repository-Browse: https://github.com/scipy/scipy ++Registry: ++ - Name: conda:conda-forge ++ Entry: scipy ++ - Name: bio.tools ++ Entry: NA ++ Checked: 2021-08-01 ++ - Name: guix ++ Entry: python-scipy ++ - Name: SciCrunch ++ Entry: SCR_008058 diff --cc debian/watch index 00000000,00000000..a20438ef new file mode 100644 --- /dev/null +++ b/debian/watch @@@ -1,0 -1,0 +1,4 @@@ ++version=4 ++opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*@ARCHIVE_EXT@)%@PACKAGE@-$1%" \ ++ https://github.com/scipy/scipy/tags \ ++ (?:.*?/)?v?@ANY_VERSION@@ARCHIVE_EXT@