From: Andreas Tille Date: Tue, 11 Feb 2014 15:45:06 +0000 (+0100) Subject: Duplicated code was verified. It seems to be quite hard to link against Debian packa... X-Git-Tag: archive/raspbian/0.22.0+ds-1+rpi1~1^2^2~408 X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=3720252df4455022c4c9ae123c86249a07239070;p=python-pysam.git Duplicated code was verified. It seems to be quite hard to link against Debian packaged samtools - so work down the draft in debian/copyright and upload --- diff --git a/debian/DRAFT b/debian/DRAFT deleted file mode 100644 index 663482e..0000000 --- a/debian/DRAFT +++ /dev/null @@ -1,5 +0,0 @@ -This is a draft package. Everybody is welcome to polish and upload it. - -Current issues: - - * Uses local copies of samtools and tabix. diff --git a/debian/copyright b/debian/copyright index 93c7aec..9359c6d 100644 --- a/debian/copyright +++ b/debian/copyright @@ -1,9 +1,35 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: pysam +Upstream-Contact: Heng Li Source: http://pysam.googlecode.com/files/pysam-0.7.tar.gz Files: * -Copyright: © 2008-2009 Genome Research Ltd. +Copyright: 2008-2010 Genome Research Ltd. +License: MIT + +Files: samtools/khash.h samtools/kseq.h samtools/khash.h +Copyright: 2008-2011 by Attractive Chaos +License: MIT + +Files: samtools/kprobaln.c.pysam.c +Copyright: 2003-2006, 2008-2010, by Heng Li +License: MIT + +Files: tabix/tabix.h +Copyright: 2009 Genome Research Ltd (GRL), 2010 Broad Institute +License: MIT + +Files: samtools/bcftools/bcf.h +Copyright: 2010 Broad Institute +License: MIT + +Files: samtools/bgzf.c.pysam.c samtools/bgzf.h tabix/bgzf.c.pysam.c tabix/bgzf.h +Copyright: 2008 Broad Institute / Massachusetts Institute of Technology + 2011,2012 Attractive Chaos +License: MIT + +Files: tabix/bgzip.c.pysam.c +Copyright: 2008 Broad Institute / Massachusetts Institute of Technology License: MIT License: MIT @@ -30,19 +56,6 @@ License: MIT DRAFT ===== -The copyright of samtools and tabix must be documented as well ! - -Files: samtools/bam.h samtools/faidx.h samtools/khash.h samtools/kseq.h samtools/ksort.h tabix/khash.h tabix/knetfile.c.pysam.c tabix/ksort.h tabix/tabix.h -Copyright: 2008-2010 Genome Research Ltd (GRL). - -Files: samtools/bcftools/bcf.h -Copyright: (c) 2010 Broad Institute - -Files: samtools/bgzf.c.pysam.c samtools/bgzf.h tabix/bgzf.c.pysam.c tabix/bgzf.h tabix/bgzip.c.pysam.c -Copyright: 2008 Broad Institute / Massachusetts Institute of Technology - -samtools/faidx.h: @copyright The Wellcome Trust Sanger Institute. - Files: samtools/kaln.c.pysam.c samtools/kaln.h samtools/kprobaln.h Copyright: 2003-2006, 2008, 2009, by Heng Li