From: Rebecca N. Palmer Date: Sun, 21 Apr 2024 12:50:13 +0000 (+0100) Subject: Import pandas_2.1.4+dfsg-8.debian.tar.xz X-Git-Tag: archive/raspbian/2.2.3+dfsg-7+rpi1~1^2^2^2^2^2~39^2 X-Git-Url: https://dgit.raspbian.org/?a=commitdiff_plain;h=1d7c5ac30c7e3fb1b9f52f2752efad55637a6148;p=pandas.git Import pandas_2.1.4+dfsg-8.debian.tar.xz [dgit import tarball pandas 2.1.4+dfsg-8 pandas_2.1.4+dfsg-8.debian.tar.xz] --- 1d7c5ac30c7e3fb1b9f52f2752efad55637a6148 diff --git a/README.source b/README.source new file mode 100644 index 00000000..c60acd4c --- /dev/null +++ b/README.source @@ -0,0 +1,18 @@ +New upstream and contributors_list update (warning: assumes my directory layout): + +#update this: export version=1.5.1 +cd ~/Debian/sourcepkgs/pandas +GBP_CONF_FILES=~/.gbp.conf gbp import-orig --upstream-branch=upstream --debian-branch=main --uscan --pristine-tar +echo "Current to version ${version} (generated by git shortlog -ns)" > debian/contributors_list.txt +echo "There may be multiple entries for the same person if they have used more than one (form of their) name" >> debian/contributors_list.txt +echo "https://github.com/pandas-dev/pandas/graphs/contributors" >> debian/contributors_list.txt +echo "" >> debian/contributors_list.txt +cd ~/Debian/upstreams/pandas +git pull +git checkout v${version} +git shortlog -ns >> ~/Debian/sourcepkgs/pandas/debian/contributors_list.txt +git checkout main +cd ~/Debian/sourcepkgs/pandas +echo "" >> debian/contributors_list.txt +echo "Debian packaging" >> debian/contributors_list.txt +git shortlog -ns -- debian >> debian/contributors_list.txt diff --git a/changelog b/changelog new file mode 100644 index 00000000..c723e1cc --- /dev/null +++ b/changelog @@ -0,0 +1,1731 @@ +pandas (2.1.4+dfsg-8) unstable; urgency=medium + + * Re-enable the documentation. + * Bump Standards-Version to 4.7.0 (no changes needed). + + -- Rebecca N. Palmer Sun, 21 Apr 2024 13:50:13 +0100 + +pandas (2.1.4+dfsg-7) unstable; urgency=medium + + * Tests: don't require 32-bit to imply time32. (Closes: #1068104) + * Temporarily disable the documentation (workaround for #1068349). + * Tests: temporarily ignore dask tests (workaround for #1068422). + + -- Rebecca N. Palmer Fri, 05 Apr 2024 22:44:46 +0100 + +pandas (2.1.4+dfsg-6) unstable; urgency=medium + + * Tests: try again to stop testing __pycache__. (Closes: #1063959) + * Tests: avoid FutureWarning from newer xarray. (Closes: #1066801) + * Drop pytables test-depends (skipping tests) on architectures + where it is not available. (Closes: #1064384) + + -- Rebecca N. Palmer Sat, 16 Mar 2024 17:11:33 +0000 + +pandas (2.1.4+dfsg-5) unstable; urgency=medium + + * Tests: stop trying to test __pycache__. (Closes: #1063959) + + -- Rebecca N. Palmer Sun, 18 Feb 2024 20:31:18 +0000 + +pandas (2.1.4+dfsg-4) unstable; urgency=medium + + * Tests: shorten ignoredtests to avoid timeout. + * Temporarily skip numba tests (workaround for #1033907). + * Update transition Breaks. + + -- Rebecca N. Palmer Fri, 09 Feb 2024 20:48:14 +0000 + +pandas (2.1.4+dfsg-3) unstable; urgency=medium + + * Add more transition Breaks (see #1043240). + * Upload to unstable. (Closes: #1056828) + * Tests: don't fail when (random) sum test input sums to near-0, + use our paths, depend on pytest-localserver, skip broken test. + * Docs: re-enable style.ipynb. + + -- Rebecca N. Palmer Thu, 01 Feb 2024 07:52:49 +0000 + +pandas (2.1.4+dfsg-2) experimental; urgency=medium + + * Fix autopkgtest syntax error. + * Add more transition Breaks. + * Tests: try again to ignore 1**NaN, NaN**0 NaNs on mips*. + * Tests: be compatible with current blosc2. (Closes: #1061043) + + -- Rebecca N. Palmer Sun, 21 Jan 2024 18:44:54 +0000 + +pandas (2.1.4+dfsg-1) experimental; urgency=medium + + * Upstream bugfix release. Update contributors_list and patches. + * Add transition Breaks. + * Temporarily disable style.ipynb (workaround for #1057309). + * Tests: ignore some DeprecationWarnings and pytables exceptions + to allow building in Python 3.12 (see #1055801). + + -- Rebecca N. Palmer Fri, 08 Dec 2023 22:06:00 +0000 + +pandas (2.1.3+dfsg-1) experimental; urgency=medium + + * Upstream bugfix release. Update contributors_list and patches. + * Re-enable numexpr for **, as upstream have decided to accept + its different overflow behaviour. + * Tests: fix autopkgtest syntax errors. + * Allow building on ports without pyreadstat or matplotlib. + + -- Rebecca N. Palmer Sun, 12 Nov 2023 21:53:27 +0000 + +pandas (2.1.1+dfsg-2) experimental; urgency=medium + + * Tests: don't fail when xlsxwriter is not installed. + + -- Rebecca N. Palmer Fri, 13 Oct 2023 19:43:13 +0100 + +pandas (2.1.1+dfsg-1) experimental; urgency=medium + + * Upstream bugfix release. Update contributors_list and patches. + * Don't test-depend on tabulate, because our version is too old. + * Extend find_test_data to cover a new fixture. + * Tests: try again to ignore 1**NaN, NaN**0 NaNs on mips*. + + -- Rebecca N. Palmer Wed, 11 Oct 2023 07:40:12 +0100 + +pandas (2.1.0+dfsg-1) experimental; urgency=medium + + * New upstream release. Update copyright, patches, dependencies. + * Tests: try again to ignore 1**NaN, NaN**0 NaNs on mips*, + ignore warnings on Itanium, + run with fixed locale set, skip not fail without matplotlib. + * Docs: fix bug in previous reproducibility patch. + * d/watch: Use git, as the tarball now excludes docs and test data. + * Don't crash in setup.py clean. + + -- Rebecca N. Palmer Sun, 03 Sep 2023 22:06:46 +0100 + +pandas (2.0.3+dfsg-6) experimental; urgency=medium + + * Tests: try again to ignore NaN warnings on mips*. + * Build on ports without sqlalchemy or working matplotlib. + * Reproducibility: strip object addresses, + disable some timestamps and random IDs. + + -- Rebecca N. Palmer Sun, 27 Aug 2023 11:17:44 +0100 + +pandas (2.0.3+dfsg-5) experimental; urgency=medium + + * Fix SAS I/O crash on armhf. + * Clean up after documentation build. + * Tests: ignore NaN warnings and 1**NaN, NaN**0 NaNs on mips*. + * Docs: use fixed seeds for reproducibility. + + -- Rebecca N. Palmer Fri, 25 Aug 2023 21:26:09 +0100 + +pandas (2.0.3+dfsg-4) experimental; urgency=medium + + * Ignore numba errors on most non-x86 systems (workaround + for #1033907). This already warns the user. + * Run but ignore some previously skipped tests. + * Tests: revert "don't use : in numexpr variable names" + as that wasn't actually the problem. + * Tests: ignore another non-warning on armel. + * Fix spelling. + + -- Rebecca N. Palmer Sun, 20 Aug 2023 09:26:03 +0100 + +pandas (2.0.3+dfsg-3) experimental; urgency=medium + + * Don't use numexpr for **, as it has different overflow behaviour. + * Tests: don't use : in numexpr variable names. + * Fix missing import on arm*. + + -- Rebecca N. Palmer Thu, 17 Aug 2023 19:51:45 +0100 + +pandas (2.0.3+dfsg-2) experimental; urgency=medium + + * Clean up after tests. + * Don't build in bare C locale. + * Docs: make more plots reproducible. + * Remove the warning that results may be wrong on mips*, + as this appears to have been fixed. + * Tests: don't fail on warnings we added. + * Remove unnecessary HDF/Stata I/O warnings. + * Depend on system tzdata not PyPI tzdata (see #1043968). + Use tzdata-legacy where old-style timezone names are used. + * Tests: re-enable dask tests (see #1043093). + + -- Rebecca N. Palmer Sun, 13 Aug 2023 21:55:15 +0100 + +pandas (2.0.3+dfsg-1) experimental; urgency=medium + + * New upstream release. Drop/refresh patches, update dependencies. + * Upload to experimental, due to potential breakage. + * Add dask Breaks and disable tests (see #1043093). + * Tests: re-enable numba tests. + + -- Rebecca N. Palmer Sun, 06 Aug 2023 11:02:39 +0100 + +pandas (1.5.3+dfsg-4) unstable; urgency=medium + + * Docs: allow building with Sphinx 7. (Closes: #1042672) + * Remove unused python3-six dependencies. (Closes: #1039441) + + -- Rebecca N. Palmer Sun, 30 Jul 2023 22:34:06 +0100 + +pandas (1.5.3+dfsg-3) unstable; urgency=medium + + * Tests: don't fail with fsspec 2023. (Closes: #1042043) + + -- Rebecca N. Palmer Wed, 26 Jul 2023 07:57:11 +0100 + +pandas (1.5.3+dfsg-2) unstable; urgency=medium + + * Tests: use a non-backzone timezone. (Closes: #1031437) + + -- Rebecca N. Palmer Sun, 19 Feb 2023 11:01:48 +0000 + +pandas (1.5.3+dfsg-1) unstable; urgency=medium + + * Upstream bugfix release. Update copyright and patches. + * Tests: ignore plot rounding errors. (Closes: #1029251) + * Tests: re-enable dask test, ignore numpy 1.24 warning. + * Docs: re-enable style.ipynb. + + -- Rebecca N. Palmer Sun, 22 Jan 2023 11:54:30 +0000 + +pandas (1.5.2+dfsg-6) unstable; urgency=medium + + * Move xarray to Build-Depends-Indep to break circular dependency. + + -- Rebecca N. Palmer Wed, 11 Jan 2023 07:34:28 +0000 + +pandas (1.5.2+dfsg-5) unstable; urgency=medium + + * Fix or ignore warnings from numpy 1.24. + * Stop ignoring tests on mips*, thanks to Adrian Bunk. + + -- Rebecca N. Palmer Tue, 10 Jan 2023 20:48:34 +0000 + +pandas (1.5.2+dfsg-4) unstable; urgency=medium + + * Add dask transition Breaks (see #1025393). + * Don't try to load intersphinx links from python-numpy-doc, + as it no longer exists. + * Upload to unstable. (Closes: #1023965, #1022571) + + -- Rebecca N. Palmer Mon, 09 Jan 2023 19:45:45 +0000 + +pandas (1.5.2+dfsg-3) experimental; urgency=medium + + * Tests: ignore a numpy warning. + + -- Rebecca N. Palmer Sat, 07 Jan 2023 10:09:11 +0000 + +pandas (1.5.2+dfsg-2) experimental; urgency=medium + + * Fix date_range overflow in 32-bit. (Closes: #1026351) + * Don't try to load intersphinx links from python-matplotlib-doc, + as it no longer exists. (Closes: #1027576) + * Re-enable parso-using tests (as #1023896 has been fixed). + * Bump Standards-Version to 4.6.2 (no changes needed). + + -- Rebecca N. Palmer Fri, 06 Jan 2023 21:36:03 +0000 + +pandas (1.5.2+dfsg-1) experimental; urgency=medium + + * Upstream bugfix release. Update contributors_list. + * Fix Lintian typo. + * Xfail parso-using tests (workaround for #1023896). + * Temporarily drop numba test-depends (skips tests), + as it is uninstallable due to #1024795. + * Add transition Breaks (see #1022571). + + -- Rebecca N. Palmer Wed, 30 Nov 2022 21:48:47 +0000 + +pandas (1.3.5+dfsg-6) unstable; urgency=medium + + * Team upload + * Ignore test failures for first build with Python 3.11, + see #1023965 + + -- Graham Inggs Sun, 13 Nov 2022 10:36:51 +0000 + +pandas (1.5.1+dfsg-3) experimental; urgency=medium + + * Revert minimum Cython version. + * Tests: fix another little-endian assumption. + * Silence some Lintian messages. + + -- Rebecca N. Palmer Thu, 10 Nov 2022 21:36:53 +0000 + +pandas (1.5.1+dfsg-2) experimental; urgency=medium + + * Tests: xfail rolling.var/std rounding error on i386, + don't assume little-endian, + re-disable some SQL tests our setup blocks. + * Temporarily lower minimum Cython version (see LP#1995992). + + -- Rebecca N. Palmer Wed, 09 Nov 2022 21:17:44 +0000 + +pandas (1.5.1+dfsg-1) experimental; urgency=medium + + * New upstream release. Update copyright and patches. + * Include more of the optional test-depends, for more test coverage. + * Update minimum dependency versions. + * Docs: update Sphinx extension dependencies, + use pydata theme but disable analytics (for privacy) and + features requiring dependencies we don't have. + * Tests: use the upstream mechanism to skip non-CI-friendly + (e.g. excessively resource-heavy) tests. + + -- Rebecca N. Palmer Mon, 07 Nov 2022 21:02:49 +0000 + +pandas (1.4.3+dfsg-6) experimental; urgency=medium + + * Fix NaT bug introduced by previous patch. + + -- Rebecca N. Palmer Wed, 24 Aug 2022 22:01:26 +0100 + +pandas (1.4.3+dfsg-5) experimental; urgency=medium + + * Fix bounds checking in float-to-datetime conversion. + + -- Rebecca N. Palmer Tue, 23 Aug 2022 22:24:15 +0100 + +pandas (1.4.3+dfsg-4) experimental; urgency=medium + + * Tests: skip another s390x numba issue, new riscv64 date error test. + + -- Rebecca N. Palmer Mon, 22 Aug 2022 22:25:08 +0100 + +pandas (1.4.3+dfsg-3) experimental; urgency=medium + + * Don't warn on non-x86 NaN->datetime cast, + as this has been fixed in numpy (#877754). + * Tests: fix architecture detection, skip another s390x numba crash, + extend hurd_compat.patch, more output around riscv64 date errors. + * Add transition Breaks (see #1017809). + + -- Rebecca N. Palmer Sun, 21 Aug 2022 18:13:03 +0100 + +pandas (1.4.3+dfsg-2) experimental; urgency=medium + + * Tests: don't assume little-endian, + don't try to cast pytz version to float, + ignore a missing numpy warning on armel. + + -- Rebecca N. Palmer Sat, 20 Aug 2022 10:32:58 +0100 + +pandas (1.4.3+dfsg-1) experimental; urgency=medium + + * New upstream release. Update copyright and patches. + * Upload to experimental, due to potential breakage. + * Remove xlwt Recommends. + * Update build/test-Depends. + * Re-enable numba (see #1000336). + * Update README.source. + * Update Lintian override format (see #1007002). + * Tests: add a searchable failure message to crashes/errors, + be less verbose so the log fits in the Salsa CI size limit, + remove a now-useless xlrd test, xfail some tests on 32-bit. + * Bump Standards-Version to 4.6.1 (no changes needed). + * Show the numba non-x86 warning on more (all?) numba uses. + * Drop stable_test_urls.patch. + + -- Rebecca N. Palmer Wed, 27 Jul 2022 22:17:33 +0100 + +pandas (1.3.5+dfsg-5) unstable; urgency=medium + + * Fix FTBFS with Sphinx 5. (Closes: #1013375) + + -- Rebecca N. Palmer Sun, 26 Jun 2022 15:06:07 +0100 + +pandas (1.3.5+dfsg-4) unstable; urgency=medium + + * Temporarily skip numba tests. (Closes: #1008179) + + -- Rebecca N. Palmer Fri, 25 Mar 2022 20:57:26 +0000 + +pandas (1.3.5+dfsg-3) unstable; urgency=medium + + * Tests: be compatible with new fsspec. (Closes: #1006170) + * Re-enable numba tests. + * Fix pyversions call. + * Enable Salsa CI. + * Update Lintian overrides. + + -- Rebecca N. Palmer Mon, 21 Feb 2022 07:35:51 +0000 + +pandas (1.3.5+dfsg-2) unstable; urgency=medium + + * Temporarily skip numba tests (see LP#1951814). + + -- Rebecca N. Palmer Fri, 28 Jan 2022 19:22:53 +0000 + +pandas (1.3.5+dfsg-1) unstable; urgency=medium + + * Upstream bugfix release. Update contributors_list. + * Refresh patches, drop patches no longer needed. + * d/watch: Ignore RC versions. + * Docs: Add missing mathjax dependency. + + -- Rebecca N. Palmer Tue, 11 Jan 2022 21:25:17 +0000 + +pandas (1.3.4+dfsg-7) unstable; urgency=medium + + * Team upload. + * Disable more numba tests on 32bit archs + + -- Jochen Sprickerhof Thu, 02 Dec 2021 17:32:54 +0100 + +pandas (1.3.4+dfsg-6) unstable; urgency=medium + + * Team upload. + * Fix an other import in the test patch + * Add closes bug to old changelog + + -- Jochen Sprickerhof Wed, 01 Dec 2021 10:36:56 +0100 + +pandas (1.3.4+dfsg-5) unstable; urgency=medium + + * Team upload. + * Fix missing import + * Remove unused salsa-ci.yml + + -- Jochen Sprickerhof Tue, 30 Nov 2021 23:39:49 +0100 + +pandas (1.3.4+dfsg-4) unstable; urgency=medium + + * Tests: remove another 64 bit assumption. + * Warn the user and ignore all tests on mips*. + + -- Rebecca N. Palmer Tue, 30 Nov 2021 10:11:08 +0000 + +pandas (1.3.4+dfsg-3) unstable; urgency=medium + + * Tests: remove some more 64 bit or x86-or-arm64 assumptions. + * Docs: add missing MathJax.js symlink, remove unused URL replacement. + * Add transition Breaks (see #999415). + * Upload to unstable. (Closes: #999415) + + -- Rebecca N. Palmer Mon, 29 Nov 2021 21:59:11 +0000 + +pandas (1.3.4+dfsg-2) experimental; urgency=medium + + * Stop ignoring build-time tests. + * Tests: don't assume 64 bit or x86-or-arm64. + * Fix #877754 warning. + * Xfail more numba tests on big-endian systems. + * Skip test_statsmodels during build to break dependency cycle. + + -- Rebecca N. Palmer Thu, 25 Nov 2021 22:04:47 +0000 + +pandas (1.3.4+dfsg-1) experimental; urgency=medium + + [ Andreas Tille ] + * Fix watchfile to detect new versions on github + * New upstream version (Closes: #1000422) + * Standards-Version: 4.6.0 (routine-update) + * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- + update) + * Remove trailing whitespace in debian/copyright (routine-update) + * Add salsa-ci file (routine-update) + * Set upstream metadata fields: Bug-Submit, Repository, Repository-Browse, + Security-Contact. + * Remove obsolete field Name from debian/upstream/metadata (already present in + machine-readable debian/copyright). + * Apply multi-arch hints. + + python-pandas-doc: Add Multi-Arch: foreign. + * Remove hidden files and directories that are confusing gbp + * drop tag definitions from debian/gbp.conf + + [ Rebecca N. Palmer ] + * Upload to experimental (see #999415). + * Update contributors_list and d/copyright. + * Refresh patches, remove no longer needed patches. + * Update minimum dependency versions. + * Re-enable xlrd and numba tests (#976620 and #972246 have ben fixed). + * Temporarily disable failing style.ipynb build. + * Tests: accept changed error messages, add new dependency, + skip/xfail tests that our test setup breaks, clean up afterwards. + * Temporarily ignore build-time tests to get a first build. + * Be compatible with matplotlib 3.5. + + -- Rebecca N. Palmer Sun, 21 Nov 2021 21:04:26 +0000 + +pandas (1.1.5+dfsg-2) unstable; urgency=medium + + * Remove dead URL from tests/examples. (Closes: #979621) + * Mark autopkgtest needs-internet. + * Revert "Print uname etc during build". + * Mark matplotlib nocheck/nodoc and allow building on ports without + matplotlib or numexpr. (Closes: #977470) + * Add python3-tabulate build/test-depends. + * Add bottleneck and numexpr test-depends. + * Tests: don't require warnings that jedi no longer produces. + + -- Rebecca N. Palmer Tue, 12 Jan 2021 21:06:04 +0000 + +pandas (1.1.5+dfsg-1) unstable; urgency=medium + + * Upstream bugfix release. Refresh patches, contributors_list. + * Default to openpyxl not xlrd in read_excel, and skip xlrd tests, + as xlrd fails if defusedxml is installed (#976620). + * Skip numba tests, and not other rolling.apply tests, on s390x. + (LP: #1901860) + * Tests: on 32 bit systems, avoid time input that overflows. + * Print uname etc during build (test for #973854). + * Bump Standards-Version to 4.5.1 (no changes needed). + + -- Rebecca N. Palmer Mon, 07 Dec 2020 23:06:28 +0000 + +pandas (1.1.4+dfsg-1) unstable; urgency=medium + + * Upstream bugfix release. Refresh patches, contributors_list. + * Remove numba test-depends (skips tests). (Closes: #973589) + * Loosen pandas-lib->pandas Depends versioning. (Closes: #973289) + + -- Rebecca N. Palmer Wed, 04 Nov 2020 18:36:11 +0000 + +pandas (1.1.3+dfsg-2) unstable; urgency=medium + + * Tests: re-xfail an intermittent instance of #877419. + * Remove no longer needed test_statsmodels xfail. + * Fix invalid test skips. + + -- Rebecca N. Palmer Thu, 22 Oct 2020 07:14:29 +0100 + +pandas (1.1.3+dfsg-1) unstable; urgency=medium + + * Upstream bugfix release. Refresh patches, contributors_list. + * Remove outdated README.source, + add contributors_list update process. + * Fix invalid test xfail. + * Re-add mistakenly removed non-x86 test xfails. + * Declare transition Breaks (see #969650). + * Skip another test if multiprocessing is not available. + * Update cython3 Depends. + * Fix pytables expression bug with Python 3.9. (Closes: #972015) + * Allow test_statsmodels to fail on 3.9 to break bootstrap cycle. + * Upload to unstable. (Closes: #969650) + + -- Rebecca N. Palmer Sun, 18 Oct 2020 16:22:36 +0100 + +pandas (1.1.1+dfsg-3) experimental; urgency=medium + + * Remove no longer needed test xfails. + * Xfail some more non-x86 numba tests and a new instance of #877419. + * Skip test_register_entrypoint during build. + * Tests: don't assume little-endian. + + -- Rebecca N. Palmer Thu, 03 Sep 2020 08:01:24 +0100 + +pandas (1.1.1+dfsg-2) experimental; urgency=medium + + * Unconditionally build-depend on sphinx-common (for dh_sphinxdoc). + * Re-enable but ignore another potentially crashing non-x86 test. + + -- Rebecca N. Palmer Tue, 01 Sep 2020 08:17:32 +0100 + +pandas (1.1.1+dfsg-1) experimental; urgency=medium + + * New upstream release. + * Upload to experimental. + * Drop/refresh patches. Update d/copyright and contributors_list. + * Re-enable asyncio tests. + * Skip fsspec tests while it is too old a version. + * Fix plot test cleanup (upstream bug 35080). + * Skip test that is expected to fail in our setup. + * Update minimum dependency versions. + * Use dh_sphinxdoc. + * Re-enable but ignore potentially crashing non-x86 tests. + * Simplify d/rules, mostly by using pybuild more. + + -- Rebecca N. Palmer Mon, 31 Aug 2020 18:44:39 +0100 + +pandas (1.0.5+dfsg-3) unstable; urgency=medium + + * Remove pytest-asyncio test-depends. + * Remove numba test-depends on non-x86: at least s390x crashes. + + -- Rebecca N. Palmer Wed, 26 Aug 2020 22:34:50 +0100 + +pandas (1.0.5+dfsg-2) unstable; urgency=medium + + * Fix missing import and update numba submodule name in patches. + * Disable asyncio tests (workaround for #969050). + * Warn that numba may give wrong answers on non-x86, + and remove test-depends on mipsel. + * Skip a crashing test on s390x. + + -- Rebecca N. Palmer Wed, 26 Aug 2020 20:19:16 +0100 + +pandas (1.0.5+dfsg-1) unstable; urgency=medium + + * Upstream bugfix release. Refresh patches, contributors_list. + * Fix invalid test xfails. + * Only Recommend numba on amd64, to reduce the risk of bugs. + * Don't test-depend on numba on ppc64el (where it crashes, #863511?) + or on ports architectures (where it mostly isn't available). + * Remove no longer needed test xfails/skips. + * Upload to unstable. (Closes: #950430) + + -- Rebecca N. Palmer Tue, 25 Aug 2020 20:07:50 +0100 + +pandas (0.25.3+dfsg2-5) unstable; urgency=medium + + * Tests: ignore rounding difference on i386. (Closes: #968208) + + -- Rebecca N. Palmer Sun, 16 Aug 2020 20:09:14 +0100 + +pandas (0.25.3+dfsg2-4) unstable; urgency=medium + + * Be compatible with matplotlib 3.3. (Closes: #966393) + * Docs: fix broken remote->local Javascript replacement. + + -- Rebecca N. Palmer Sun, 09 Aug 2020 22:11:25 +0100 + +pandas (0.25.3+dfsg2-3) unstable; urgency=medium + + * Nested DataFrames may raise ValueError with numpy 1.19 + (upstream bug 32289). Clarify error message and xfail tests. + * Stop using a no-longer-existing numpy constant. + * Tests: ignore deprecations/rewordings and avoid setup exception + with numpy 1.19. (Together, the above Closes: #963817) + * Bump debhelper compat to 13. + * Fix HDFStore.flush (part of #877419) on s390x. + * Add NEWS.html.gz for Standards-Version 4.5.0. + (Choosing not to also add NEWS.gz as it would be large.) + * Tests: accept Hurd's errno and lack of multiprocessing. + * Docs: replace embedded Javascript copies with links. + + -- Rebecca N. Palmer Sun, 28 Jun 2020 21:47:22 +0100 + +pandas (1.0.4+dfsg-1) experimental; urgency=medium + + * Upstream bugfix release. (Closes: #962335) + * Refresh patches, update contributors_list. + * Fix broken tests. + * Tests: allow numba to raise an error on 32 bit systems. + * Don't test-depend on numba on armel (where it crashes, + possibly #863508) or ppc64/riscv64 (where it isn't available). + * Xfail some more HDF5 tests on big-endian architectures. + + -- Rebecca N. Palmer Tue, 09 Jun 2020 22:19:23 +0100 + +pandas (0.25.3+dfsg2-2) unstable; urgency=medium + + * Tests: don't fail on jedi deprecation warnings. + + -- Rebecca N. Palmer Thu, 07 May 2020 11:57:06 +0100 + +pandas (1.0.3+dfsg2-1) experimental; urgency=medium + + * Upstream bugfix release, update contributors_list. + * Merge packaging from unstable, + but omit no longer needed clipboard warn/xfail. + * Only show the NaN -> datetime warning from float dtypes + (to avoid an exception while trying to check). + * Recommend numba, as we now have a recent enough version. + * Re-add dask test-dependency. + * Clarify non-x86 warnings, remove no longer needed xfails / ignores. + * Clean up whitespace and patch names/descriptions. + * Remove patches no longer needed. + * Network tests: use more stable URLs. + + -- Rebecca N. Palmer Wed, 06 May 2020 17:07:44 +0100 + +pandas (0.25.3+dfsg2-1) unstable; urgency=medium + + * Remove inconveniently licensed (CC-BY-SA) snippets. + * Fix (harmless) SyntaxWarning on install. (Closes: #956021) + * Fix NaT sort order and test failures with numpy 1.18. + (Closes: #958531) + + -- Rebecca N. Palmer Wed, 06 May 2020 12:18:23 +0100 + +pandas (0.25.3+dfsg-9) unstable; urgency=medium + + * Don't raise on import without matplotlib installed. Add test of this. + + -- Rebecca N. Palmer Fri, 03 Apr 2020 21:56:02 +0100 + +pandas (0.25.3+dfsg-8) unstable; urgency=medium + + * Tests: don't fail on harmless changes in dependencies. (Closes: #954647) + + -- Rebecca N. Palmer Thu, 02 Apr 2020 18:53:32 +0100 + +pandas (0.25.3+dfsg-7) unstable; urgency=medium + + * Fix another test failure due to our warnings. + * Skip rather than xfail crashing tests. + + -- Rebecca N. Palmer Wed, 26 Feb 2020 18:45:58 +0000 + +pandas (0.25.3+dfsg-6) unstable; urgency=medium + + * Don't fail tests on our own warnings. + * Xfail some more HDF tests on non-x86 architectures. + * Warn that clipboard I/O is broken on big-endian architectures + and xfail test. + * Use pytest-forked to isolate (already xfailed) crashing test. + * Xfail tests that use no-longer-existing URLs. + + -- Rebecca N. Palmer Wed, 26 Feb 2020 07:40:25 +0000 + +pandas (0.25.3+dfsg-5) unstable; urgency=medium + + * Backport packaging from experimental: + - Remove unnecessary test skips, and reorganize remaining ones. + - Use xfails instead of skips. + - Add warnings for the known non-x86 breakages + (NaN -> datetime #877754, HDF and Stata I/O #877419). + - Tell I/O tests where to find the source tree's test data + instead of skipping them. + - Stop using deprecated envvar/tag names. + - Use https for links where available. + + -- Rebecca N. Palmer Mon, 24 Feb 2020 22:38:26 +0000 + +pandas (1.0.1+dfsg-1) experimental; urgency=medium + + * Upstream bugfix release. + * Refresh patches. + * Update and sort d/copyright, update contributors_list. + * Re-enable checking the test suite. + * Declare transition Breaks (see #950430). + * Add jinja2 recommends/test-depends. + * Fix test_to_numpy failure on big-endian systems. + * Register documentation in doc-base. (Closes: #879226) + * Remove no longer needed test xfails/skips, + and reorganize the remaining ones. + * Tell I/O tests where to find the source tree's test data + instead of skipping them. + * Enable multiarch. + * Temporarily drop dask test-dependency to avoid uninstallability. + * Add warnings for the known non-x86 breakages + (NaN -> datetime #877754, HDF and Stata I/O #877419). + + -- Rebecca N. Palmer Sun, 23 Feb 2020 17:13:08 +0000 + +pandas (1.0.0+dfsg-1) experimental; urgency=medium + + * New upstream release. + * Upload to experimental, as this is an API break (see #950430). + * Drop patches applied upstream, refresh others. + * Update and improve d/copyright, update contributors_list. + * Xfail a test that fails in the C locale. + * Update and organize depends/recommends. + * Docs: use a sphinx theme we have, fix spelling, + link to rather than embed remote resource, + use https links where available. + * Stop using deprecated envvar/tag names. + * Xfail rather than skip previously broken tests, + and put the condition in the patch not d/rules or d/tests. + * Remove no longer used patch-stamp. + * Temporarily ignore the test suite to get a first build. + + -- Rebecca N. Palmer Sun, 02 Feb 2020 21:04:36 +0000 + +pandas (0.25.3+dfsg-4) unstable; urgency=medium + + * No-change upload to unstable. (Closes: #937236, #931557) + + -- Rebecca N. Palmer Sun, 10 Nov 2019 16:35:41 +0000 + +pandas (0.25.3+dfsg-3) experimental; urgency=medium + + * Fix autopkgtest. + + -- Rebecca N. Palmer Sat, 09 Nov 2019 10:29:47 +0000 + +pandas (0.25.3+dfsg-2) experimental; urgency=medium + + * Split up the test suite to fit in memory on mipsel, + and stop ignoring it there. (Closes: #943732) + * Reproducibility: use correct path for stripping docs. + * Declare transition Breaks (see #931557). + * Tests: ignore warning from Python 3.8. + * Update d/copyright (some files have moved). + * Use local requirejs. + + -- Rebecca N. Palmer Fri, 08 Nov 2019 07:56:16 +0000 + +pandas (0.25.3+dfsg-1) experimental; urgency=medium + + * Upstream bugfix release. + * Drop patch no longer needed. + * Update autopkgtest dependencies, drop unused link. + * Better document test skips, remove unnecessary ones. + * Reproducibility: strip timestamps and build paths, + use fixed random seeds for building documentation. + * Ignore test suite on mipsel. + + -- Rebecca N. Palmer Sat, 02 Nov 2019 22:26:31 +0000 + +pandas (0.25.2+dfsg-2) experimental; urgency=medium + + * Correct path for contributors list, and don't fail when + not building the -doc package. + * Try again to fix test failure due to deb_nonversioneer_version. + * Skip some failing tests on non-Intel (see #943732), + require other tests to pass. + * Fix another typo. + + -- Rebecca N. Palmer Mon, 28 Oct 2019 22:06:10 +0000 + +pandas (0.25.2+dfsg-1) experimental; urgency=medium + + [ Graham Inggs ] + * Skip python2 test_register_by_default on s390x + * Fix python2 test failures in certain locales + + [ Yaroslav Halchenko ] + * Recent upstream release + * Updated patches + * Adjusted for the gone ci/print_versions + * d/control + - added python{,3}-hypothesis to b-depends + + [ Rebecca N. Palmer ] + * New upstream release. + * Upload to experimental, as this is an API break (see #931557). + * Drop patches fixed upstream, refresh others. + * Remove Python 2 packages (see #937236). + * Use Python 3 in shebangs and subprocess calls. + * Re-enable building on Python 3.8. + * Use the new location of print_versions. + * Skip feather tests and remove build-dependency: + they now need pyarrow.feather, which isn't in Debian. + * Don't fail tests for our versioneer removal + or a differently worded error message. + * Add/update minimum dependency versions. + * Add numpydoc, nbconvert and pytest-xdist build-depends. + * Update d/copyright. + * Pre-generate a contributor list to avoid needing the git log + at build time (when it won't exist). + * Allow tests to fail for now. + + -- Rebecca N. Palmer Mon, 28 Oct 2019 07:53:21 +0000 + +pandas (0.23.3+dfsg-8) unstable; urgency=medium + + * Examples dependencies: re-add statsmodels and xarray; + also add rpy2 and feather. + * Use packaged intersphinx indexes. (Closes: #876417) + * Use https for intersphinx links. + * Remove cythonized-files*. (They are regenerated on each build.) + * Remove test xfail, as statsmodels has now been fixed. + * Set Rules-Requires-Root: no. + * Make documentation Suggest the Python 3 version. + * Suggest statsmodels. + * Only use Python 3 sphinx, and mark it -Indep/nodoc. + * Bump debhelper compat to 12 and use debhelper-compat and pybuild. + * Remove pycompat and X-Python*-Version. + * Add missing d/copyright item. + * Remove obsolete TODOs. + * Clarify descriptions. + * Stop referring to examples that no longer exist. + * Fix typos. + * Remove old (no longer used) EXCLUDE_TESTS*. + * Deduplicate documentation files. + * Use Python 3 shebangs, and fix broken shebang. + * Add python3-ipykernel, -ipywidgets, -seaborn to + Build-Depends-Indep. + * Disable dh_auto_test: it fails, and we run the tests elsewhere. + * Mark test dependencies nocheck/nodoc. + * Remove old minimum versions / alternative dependencies. + * Build-depend on dh-python. + * Don't build on python3.8, as it will fail tests (see #931557). + + -- Rebecca N. Palmer Sun, 27 Oct 2019 11:38:37 +0000 + +pandas (0.23.3+dfsg-7) unstable; urgency=medium + + * Revert test patch and use an xfail instead. + * Temporarily drop statsmodels+xarray Build-Depends, as they are + uninstallable until this is built. + * Add python3-xarray to autopkgtest Depends. + * Drop Python 2 autopkgtest (but keep build-time test). + * Remove duplicate Recommends. + + -- Rebecca N. Palmer Fri, 20 Sep 2019 08:01:37 +0100 + +pandas (0.23.3+dfsg-6) unstable; urgency=medium + + * Team upload + * Avoid FTBFS with statsmodels 0.9.0 + * Add python3-statsmodels to autopkgtest Depends + + -- Graham Inggs Wed, 18 Sep 2019 13:46:01 +0000 + +pandas (0.23.3+dfsg-5) unstable; urgency=medium + + * Team upload + * Add locales-all to Build-Depends and autopkgtest Depends in order to + consistently test in all avalable locales + * Add crh_UA to skip_noencoding_locales.patch + * Fix wrong debian/source/options exclude, thanks Steve Langasek + + -- Graham Inggs Wed, 18 Sep 2019 05:57:44 +0000 + +pandas (0.23.3+dfsg-4) unstable; urgency=medium + + * Add self to Uploaders. + * Recommend .xls format support also in Python 3. (Closes: #880125) + * Tests: don't call fixtures, as this is an error in pytest 4+. + * Don't test datetime in locales with no encoding. + (These are broken by a Python stdlib bug.) + + -- Rebecca N. Palmer Sat, 14 Sep 2019 16:37:43 +0100 + +pandas (0.23.3+dfsg-3) unstable; urgency=medium + + * Team upload. + * Make np.array @ Series act the right way round. (Closes: #923708) + * Replace #918206 fix with a fix that doesn't change the return type + and inplace-ness of np.array += DataFrame. (Closes: #923707) + * Fix missing page in documentation. + + -- Rebecca N. Palmer Wed, 06 Mar 2019 22:19:34 +0000 + +pandas (0.23.3+dfsg-2) unstable; urgency=medium + + * Team upload. + * Don't fail the build on +dfsg versions. + * Fix another d/copyright issue. + * Add d/upstream/metadata. + + -- Rebecca N. Palmer Sat, 02 Mar 2019 14:57:12 +0000 + +pandas (0.23.3+dfsg-1) unstable; urgency=medium + + * Team upload. + * Fix DataFrame @ np.array matrix multiplication. (Closes: #918206) + * Fix documentation build (Sphinx now defaults to Python 3). + (Closes: #804552, LP: #1803018) + * Add documentation examples dependencies. + * Update d/copyright. + * Remove unlicensed files. + + -- Rebecca N. Palmer Fri, 01 Mar 2019 23:02:18 +0000 + +pandas (0.23.3-1) unstable; urgency=medium + + * New upstream release + * debian/patches + - many upstreamed patches are removed and others refreshed + + -- Yaroslav Halchenko Sat, 28 Jul 2018 00:39:32 -0400 + +pandas (0.22.0-8) unstable; urgency=medium + + * Team Upload. + * patches: + + Add patch: deb_dont_call_py2_in_py3_test.patch + During python3 unit test, command 'python' is called by one of + the tests. When there is no python2 installation, tests such as + autopkgtest would fail. + * Put the conditionally applied patch to series' comment to avoid + lintianW: patch-file-present-but-not-mentioned-in-series. + * Trying to fix the autopkgtest: + + Leave a comment about the way to run unittest in the test control file. + + Synchronize B-D and autopkgtest depends. + + Allow output to stderr during test. + * Switch from nosetest to pytest. + * Synchronize pytest argument for rules and autopkgtest. + - Replace tests/unittest with the symlink pointed to tests/unittest3. + That scripts is smart enough to tell from py2 and py3, so we won't + need to write the same thing twice. + - Filter out intel tests on non-x86 architectures. + - Only enable "slow" tests on (Debian + x86) tester. "slow" tests may + consume too much memory to cause memory error or trigger OOM killer. + * control: + + Add missing python3 dependencies and sort the B-D list. + * Point Vcs-* fields to Salsa. + * Update Homepage to https://pandas.pydata.org/ . + * rules: + * Reverse the architecture filtering logic. + * Disable "slow" tests during build for non-x86 architectures. + This may significantly reduce the build time on those weak architectures. + * Don't specify the pytest marker expression twice. + The first expression will be overridden. + * Fix hardening flags. + - Cleanup the mess of unused nosetest exclusion expressions. + * Update lintian overrides. + + Override source-is-missing error, which is a false-positive triggered + by insane-line-length-in-source-file. + + Override insane-line-length-in-source-file because we have nothing + todo with lenghy lines in html. + * TODO: Point out that the unittest speed can be boosted with pytest-xdist. + + -- Mo Zhou Sun, 17 Jun 2018 16:01:16 +0000 + +pandas (0.22.0-7) unstable; urgency=medium + + * Team Upload. + + [ Mo Zhou ] + * Remove patch: deb_fix_test_failure_test_basic_indexing, which is + unneeded for pandas >= 0.21 . (Closes: #900061) + + [ Graham Inggs ] + * Add riscv64 to the list of "not intel" architectures + * Update mark_tests_working_on_intel_armhf.patch + + -- Graham Inggs Tue, 29 May 2018 13:50:59 +0000 + +pandas (0.22.0-6) unstable; urgency=medium + + * Team upload + * Fix FTBFS with Sphinx 1.7, thanks Dmitry Shachnev! + + -- Graham Inggs Tue, 24 Apr 2018 19:09:20 +0000 + +pandas (0.22.0-5) unstable; urgency=medium + + * Team upload + * Add compatibility with Matplotlib 2.2 (Closes: #896673) + + -- Graham Inggs Mon, 23 Apr 2018 13:56:12 +0000 + +pandas (0.22.0-4) unstable; urgency=medium + + * Team upload + * Fix more tests expecting little-endian results + * Fix heap corruption in read_csv on 32-bit, big-endian architectures + (Closes: #895890) + + -- Graham Inggs Sun, 22 Apr 2018 21:48:27 +0000 + +pandas (0.22.0-3) unstable; urgency=medium + + * Team upload + * Refresh and re-enable mark_tests_working_on_intel.patch + * Fix test__get_dtype tests expecting little-endian results + + -- Graham Inggs Thu, 12 Apr 2018 11:04:21 +0000 + +pandas (0.22.0-2) unstable; urgency=medium + + * debian/patches + - as upstream moved over to pytest from nose, no more nose imports were + in the code. Just adjusted patches to import nose where needed + * debian/rules + - specify LC_ALL=C locale to avoid crash while building docs + - add the 0001-TST-pytest-deprecation-warnings-GH17197-17253-reversed.patch + to the series if building on a system with an old pytest + + -- Yaroslav Halchenko Wed, 21 Feb 2018 23:44:58 -0500 + +pandas (0.22.0-1) unstable; urgency=medium + + * Upstream release + * debian/patches + - refreshed many + - updated some + - added + - up_moto_optional to skip tests requiring moto (#777089) + - deb_skip_difffailingtests to skip two failing tests + (see https://github.com/pandas-dev/pandas/issues/19774) + - up_xlwt_optional to skip a test requiring xlwt + - deb_ndsphinx_optional to make nbsphinx optional. + Make nbsphinx not required in build-depends on systems with + older python-sphinx + - mark_tests_failing_on_386.patch + see https://github.com/pandas-dev/pandas/issues/19814 + - removed adopted upstream: + - dateutil-2.6.1-fixed-ambiguous-tz-dst-be.patch + - up_tst_np_argsort_comparison2 + - disabled for now: + - mark_tests_working_on_intel.patch + - up_tst_dont_assert_that_a_bug_exists_in_numpy + + -- Yaroslav Halchenko Wed, 21 Feb 2018 10:30:06 -0500 + +pandas (0.20.3-11) unstable; urgency=medium + + * Team upload. + * Cherry-pick upstream commit 5f2b96bb637f6ddeec169c5ef8ad20013a03c853 + to workaround a numpy bug. (Closes: #884294) + + patches/up_tst_dont_assert_that_a_bug_exists_in_numpy + * Cherry-pick upstream commits to fix test failure caused by test_argsort(). + + patches/up_tst_np_argsort_comparison2 + * Workaround test failure of test_basic_indexing() in file + pandas/tests/series/test_indexing.py . + + patches/deb_fix_test_failure_test_basic_indexing + + -- Mo Zhou Sat, 20 Jan 2018 09:00:31 +0000 + +pandas (0.20.3-10) unstable; urgency=medium + + * Team upload. + * Exclude more tests failing on mips, armhf and powerpc + + -- Andreas Tille Tue, 24 Oct 2017 21:26:02 +0200 + +pandas (0.20.3-9) unstable; urgency=medium + + * Team upload. + * Add missing "import pytest" to two patched tests + * Secure URI in watch file + + -- Andreas Tille Tue, 24 Oct 2017 08:18:54 +0200 + +pandas (0.20.3-8) unstable; urgency=medium + + * Team upload. + * Exclude one more test and de-activate non-working ignore of test errors + + -- Andreas Tille Mon, 23 Oct 2017 21:32:24 +0200 + +pandas (0.20.3-7) unstable; urgency=medium + + * Team upload. + * debhelper 9 + * Use Debian packaged mathjax + * Do not Recommends python3-six since it is mentioned in Depends + * Remove redundant/outdated XS-Testsuite: autopkgtest + * Exclude one more test and de-activate non-working ignore of test errors + + -- Andreas Tille Mon, 23 Oct 2017 17:33:55 +0200 + +pandas (0.20.3-6) unstable; urgency=medium + + * Team upload. + * Ignore test errors on some architectures + (Concerns bug #877419) + * Remove __pycache__ remainings from testing + * Standards-Version: 4.1.1 + * DEP3 for Google Analytics patch + * Complete Google Analytics patch + + -- Andreas Tille Mon, 23 Oct 2017 09:05:27 +0200 + +pandas (0.20.3-5) unstable; urgency=medium + + * Make sure remainings of nose tests will not fail. That's a pretty stupid + patch since the tests are not using nose any more only some remaining + exceptions. Hope it will work anyway. + (Concerns bug #877419) + + -- Andreas Tille Mon, 16 Oct 2017 21:57:45 +0200 + +pandas (0.20.3-4) unstable; urgency=medium + + * Mark those tests @pytest.mark.intel that pass only on Intel architectures + * d/rules: try to exclude tests that were marked "intel" + (Concerns bug #877419) + + -- Andreas Tille Sat, 14 Oct 2017 19:49:01 +0200 + +pandas (0.20.3-3) unstable; urgency=medium + + * Team upload. + * Moved packaging from pkg-exppsy to Debian Science + * Exclude certain tests on certain architectures + (Concerns bug #877419) + + -- Andreas Tille Fri, 13 Oct 2017 20:52:53 +0200 + +pandas (0.20.3-2) unstable; urgency=medium + + * debian/control + - boosted policy to 4.0.0 (I think we should be ok) + - drop statsmodels from build-depends to altogether avoid the circular + build-depends (Closes: #875805) + * Diane Trout: + - Add dateutil-2.6.1-fixed-ambiguous-tz-dst-be.patch (Closes: #875807) + + -- Yaroslav Halchenko Thu, 21 Sep 2017 16:11:29 -0400 + +pandas (0.20.3-1) unstable; urgency=medium + + * Fresh upstream release + * debian/patches + - updated some, removed changeset*, and disabled possibly fixed upstream + ones + * debian/{control,rules} + - upstream switched to use pytest instead of nose + - enabled back all the tests for now + - added python-nbsphinx for b-depends, needed for docs + * debian/*.install + - no .so at the first level of subdirectories, now present on the third + + -- Yaroslav Halchenko Mon, 10 Jul 2017 20:00:59 -0400 + +pandas (0.19.2-5.1) unstable; urgency=medium + + * Non-maintainer upload. + * Apply patch by Rebecca N. Palmer + Closes: #858260 + + -- Andreas Tille Sun, 02 Apr 2017 07:06:36 +0200 + +pandas (0.19.2-5) unstable; urgency=medium + + * And one more test to skip on non-amd64 -- test_round_trip_valid_encodings + + -- Yaroslav Halchenko Thu, 12 Jan 2017 13:10:11 -0500 + +pandas (0.19.2-4) unstable; urgency=medium + + * Exclude few more "plotting" tests on non-amd64 which cause FTBFS + on s390 + + -- Yaroslav Halchenko Thu, 12 Jan 2017 11:43:13 -0500 + +pandas (0.19.2-3) unstable; urgency=medium + + * Brought back changeset_0699c89882133a41c250abdac02796fec84512e8.diff + which should resolve tests failures on BE platforms (wasn't yet + upstreamed within 0.19.x releases) + + -- Yaroslav Halchenko Thu, 12 Jan 2017 09:44:52 -0500 + +pandas (0.19.2-2) unstable; urgency=medium + + * Exclude a number of tests while running on non-amd64 platforms + due to bugs in numpy/pandas + + -- Yaroslav Halchenko Wed, 11 Jan 2017 12:13:05 -0500 + +pandas (0.19.2-1) unstable; urgency=medium + + * Fresh upstream minor release -- supposed to be bugfix but interacts + with current beta (1:1.12.0~b1-1) numpy leading to various failed tests + * debian/patches + - changeset_ae6a0a51cf41223394b7ef1038c210045d486cc8.diff + to guarantee the same Series dtype as of cut regardless of architecture + - up_buggy_overflows + workaround for inconsistent overflows while doing pow operation on big + ints + * debian/rules + - exclude more tests which are due to known issues in numpy beta and thus + not to be addressed directly in pandas + + -- Yaroslav Halchenko Wed, 04 Jan 2017 10:19:52 -0500 + +pandas (0.19.1+git174-g81a2f79-1) experimental; urgency=medium + + * New upstream snapshot from v0.19.0-174-g81a2f79 + - lots of bugfixes since 0.19.1, so decided to test snapshot + + -- Yaroslav Halchenko Sat, 10 Dec 2016 22:43:19 -0500 + +pandas (0.19.1-3) unstable; urgency=medium + + * Require cython >= 0.23 or otherwise use pre-cythoned sources + (should resolve https://github.com/pandas-dev/pandas/issues/14699 + on jessie) + * debian/control + - Build-Conflicts with python-tables 3.3.0-4 since that one leads to FTBFS + - boosted policy to 3.9.8 + * debian/rules + - Exclude few more tests which fail on big endian and other platforms + test_(msgpack|read_dta18) + * debian/patches + - changeset_0699c89882133a41c250abdac02796fec84512e8.diff + to compare in the tests against native endianness + + -- Yaroslav Halchenko Fri, 09 Dec 2016 15:49:50 -0500 + +pandas (0.19.1-2) unstable; urgency=medium + + * debian/control + - Moved statsmodels build-depend (optional) under build-depends-indep + to break circular dependency. Thanks Stuart Prescott for the analysis + * debian/patches/ + - changeset_1309346c08945cd4764a549ec63cf51089634a45.diff + to not mask problem reading json leading to use of undefined variable + + -- Yaroslav Halchenko Sun, 27 Nov 2016 21:49:40 -0500 + +pandas (0.19.1-1) unstable; urgency=medium + + * Fresh upstream release + + -- Yaroslav Halchenko Fri, 18 Nov 2016 12:19:54 -0500 + +pandas (0.19.0+git14-ga40e185-1) unstable; urgency=medium + + * New upstream post-release (includes some bugfixes) snapshot + * debian/patches + - dropped changeset_ and up_ patches adopted upstream, refreshed the rest + * debian/rules,patches + - save debian-based version into __version.py, so doesn't conflict with + upstream tests of public API + - exclude for now test_expressions on python3 + (see https://github.com/pydata/pandas/issues/14269) + + -- Yaroslav Halchenko Thu, 13 Oct 2016 10:26:18 -0400 + +pandas (0.18.1-1) unstable; urgency=medium + + * Fresh upstream release + * debian/patches/ + - changeset_46af7cf0f8e0477f6cc7454aa786a573228f0ac3.diff + to allow also AttributeError exception being thrown in the tests + (Closes: #827938) + - debian/patches/deb_skip_test_precision_i386 + removed (upstreamed) + + -- Yaroslav Halchenko Wed, 13 Jul 2016 10:42:00 -0400 + +pandas (0.18.0+git114-g6c692ae-1) unstable; urgency=medium + + * debian/control + - added python{,3}-pkg-resources to direct Depends for the packages + (Closes: #821076) + + -- Yaroslav Halchenko Sun, 17 Apr 2016 20:49:25 -0400 + +pandas (0.17.1-3) unstable; urgency=medium + + * debian/tests/unittest* + - set LC_ALL=C.UTF-8 for the tests run to prevent failure of test_set_locale + + -- Yaroslav Halchenko Tue, 08 Dec 2015 08:31:30 -0500 + +pandas (0.17.1-2) unstable; urgency=medium + + * debian/control + - make -statsmodels and -tables optional build-depends on those platforms + where they are N/A atm. Added bdepends on python3-tables since available + + -- Yaroslav Halchenko Sun, 06 Dec 2015 12:58:26 -0500 + +pandas (0.17.1-1) unstable; urgency=medium + + * Fresh upstream bugfix release + * debian/rules + - fixed deletion of moved away .so files + + -- Yaroslav Halchenko Fri, 27 Nov 2015 10:52:49 -0500 + +pandas (0.17.0+git8-gcac4ad2-2) unstable; urgency=medium + + * Bug fix: install also msgpack/*.so extensions to -lib packages + + -- Yaroslav Halchenko Sat, 10 Oct 2015 13:52:54 -0400 + +pandas (0.17.0+git8-gcac4ad2-1) unstable; urgency=medium + + * New upstream snapshot post release to pick up few bugfixes + - Started to trigger failures of test_constructor_compound_dtypes and + test_invalid_index_types -- disabled those for now, see + https://github.com/pydata/pandas/issues/11169 + * debian/rules + - Generate pandas/version.py if not present out of debian/changelog + upstream version information (versioneer wouldn't know since relies on + git) + + -- Yaroslav Halchenko Fri, 09 Oct 2015 21:35:23 -0400 + +pandas (0.16.2+git65-g054821d-1) unstable; urgency=medium + + * Fresh upstream post-release snapshot (to pick up recent fixes etc) + (Closes: #787432) + * debian/{control,rules} + - build -doc package (Closes: #660900) + - add ipython (or alternative new ones from neurodebian) into + Build-Depends-Indep to build docs + - add python{,3}-{lxml,html5lib} to Build-Depends and Recommends + - use LC_ALL=C.UTF-8 while running tests + - exclude also test_set_locale since it fails ATM + see https://github.com/pydata/pandas/issues/10471 + + -- Yaroslav Halchenko Tue, 30 Jun 2015 17:26:54 -0400 + +pandas (0.16.0~rc1-1) experimental; urgency=medium + + * New upstream release candidate + + -- Yaroslav Halchenko Fri, 13 Mar 2015 14:21:39 -0400 + +pandas (0.15.2-1) unstable; urgency=medium + + * Fresh upstream release + + -- Yaroslav Halchenko Thu, 11 Dec 2014 09:51:57 -0500 + +pandas (0.15.1+git125-ge463818-1) unstable; urgency=medium + + * New upstream snapshot from v0.15.1-125-ge463818. + * Upload to unstable during freeze since previous one in sid didn't make it + to jessie anyways + * debian/control + - remove versioning demand for cython (it would use pre-cythonized code on + older ones and there is no longer need in sid/jessie to enforce version). + As a consecuence -- removed all dsc patches pointing to + nocython3-dsc-patch, since no longer needed + + -- Yaroslav Halchenko Sun, 30 Nov 2014 21:09:36 -0500 + +pandas (0.15.0-2) unstable; urgency=medium + + * debian/control + - specify minimal numpy to be 1.7 + * debian/patches + - deb_skip_stata_on_bigendians skip test_stata again on BE platforms + - deb_skip_test_precision_i386 skip test_precision_conversion on 32bit + + -- Yaroslav Halchenko Thu, 30 Oct 2014 23:09:13 -0400 + +pandas (0.15.0-1) unstable; urgency=medium + + * New upstream release + * debian/control + - restrict statsmodels and matplotlib from being required on the ports + which do not have them + + -- Yaroslav Halchenko Sun, 26 Oct 2014 11:30:23 -0400 + +pandas (0.14.1-2) unstable; urgency=medium + + * debian/patches/changeset_314012d.diff + - Fix converter test for MPL1.4 (Closes: #763709) + + -- Yaroslav Halchenko Mon, 06 Oct 2014 11:53:42 -0400 + +pandas (0.14.1-1) unstable; urgency=medium + + * New upstream release + + -- Yaroslav Halchenko Thu, 10 Jul 2014 23:38:49 -0400 + +pandas (0.14.0+git393-g959e3e4-1) UNRELEASED; urgency=medium + + * New upstream snapshot from v0.14.0-345-g8cd3dd6 + * debian/rules + - disable running disabled tests to prevent clipboard tests failures + under kfreebsd kernels + + -- Yaroslav Halchenko Mon, 07 Jul 2014 12:29:50 -0400 + +pandas (0.14.0+git213-g741b2fa-1) experimental; urgency=medium + + * New upstream snapshot from v0.14.0-213-g741b2fa. + + -- Yaroslav Halchenko Thu, 19 Jun 2014 10:30:42 -0400 + +pandas (0.14.0+git17-g3849d5d-1) unstable; urgency=medium + + * New upstream snapshot from v0.14.0-17-g3849d5d -- has resolved a number + of bugs sneaked into 0.14.0 release, and caused FTBFS on some platforms + and backports + + -- Yaroslav Halchenko Sun, 01 Jun 2014 00:54:34 -0400 + +pandas (0.14.0-1) unstable; urgency=medium + + * New upstream release + + -- Yaroslav Halchenko Fri, 30 May 2014 08:45:35 -0400 + +pandas (0.14.0~rc1+git79-g1fa5dd4-1) experimental; urgency=medium + + * New upstream snapshot from v0.14.0rc1-73-g8793356 + * debian/patches: + - dropped CPed changeset_*s + - added deb_disable_googleanalytics + * debian/control: + - boosted policy compliance to 3.9.5 + + -- Yaroslav Halchenko Tue, 27 May 2014 16:00:00 -0400 + +pandas (0.13.1-2) unstable; urgency=low + + * debian/patches/changeset_6d56e7300d66d3ba76684334bbb44b6cd0ea9f61.diff + to fix FTBFS of statsmodels due to failing tests (Closes: #735804) + + -- Yaroslav Halchenko Sat, 08 Feb 2014 12:46:42 -0500 + +pandas (0.13.1-1) unstable; urgency=low + + * Fresh upstream release + * debian/patches + - deb_skip_test_pytables_failure to mitigate error while testing on + amd64 wheezy and ubuntu 12.04 + + -- Yaroslav Halchenko Tue, 04 Feb 2014 12:09:29 -0500 + +pandas (0.13.0+git464-g15a8ff7-1) experimental; urgency=low + + * Fresh pre-release snapshot + * debian/patches + - removed all cherry-picked patches (should have been upstreamed) + + -- Yaroslav Halchenko Wed, 29 Jan 2014 21:27:45 -0500 + +pandas (0.13.0-2) unstable; urgency=low + + * debian/patches + - 0001-BLD-fix-cythonized-msgpack-extension-in-setup.py-GH5.patch + to resolve issue with building C++ Cython extension using + pre-generated sources + - 0001-Add-division-future-import-everywhere.patch + 0002-remove-explicit-truediv-kwarg.patch + to resolve compatibility issues with elderly Numexpr + - 0001-BUG-Yahoo-finance-changed-ichart-url.-Fixed-here.patch + - deb_skip_sequencelike_on_armel to prevent FTBFS on armel due to failing + test: https://github.com/pydata/pandas/issues/4473 + + -- Yaroslav Halchenko Fri, 03 Jan 2014 23:13:48 -0500 + +pandas (0.13.0-1) unstable; urgency=low + + * Fresh upstream release + - resolved compatibility with matplotlib 1.3 (Closes: #733848) + * debian/{control,rules} + - use xvfb (added to build-depends together with xauth, and xclip) + for tests + - define http*_proxy to prevent downloads + - install .md files not .rst for docs -- were renamed upstream + - include .cpp Cython generated files into debian/cythonized-files* + + -- Yaroslav Halchenko Wed, 01 Jan 2014 18:08:22 -0500 + +pandas (0.12.0-2) unstable; urgency=low + + [ Dmitry Shachnev ] + * DEP-8 tests improvements: + - Use Xvfb for running tests. + - Increase verbosity using -v flag. + - Fix printing interpreter version in unittests3. + * Fix indentaion in debian/control. + + [ Yaroslav Halchenko ] + * debian/control + - place python3-matplotlib ahead of elderly python-matplotlib without + python3 support since now we have python3-matplotlib in sid + * debian/copyright + - go through reported missing copyright/license statements (Closes: + #700564) Thanks Luca Falavigna for the report + * debian/rules,patches + - exclude test test_bar_log due to incompatibility with matplotlib 1.3.0 (test + adjusted upstream and would be re-enabled for the new release). + - debian/patches/changeset_952c5f0bc433622d21df20ed761ee4cb728370eb.diff + adds matplotlib 1.3.0 compatibility + + -- Yaroslav Halchenko Sat, 14 Sep 2013 20:02:58 -0400 + +pandas (0.12.0-1) unstable; urgency=low + + * New upstream release: + - should address failed tests on 32bit platforms + * debian/patches + - neurodebian: allow to build for jessie with outdated cython + * debian/control + - build for Python2 >= 2.7 due to some (probably temporary) incompatibilities + in tests with 2.6 + + -- Yaroslav Halchenko Wed, 24 Jul 2013 23:29:03 -0400 + +pandas (0.12.0~rc1+git127-gec8920a-1) experimental; urgency=low + + * New upstream snapshot from origin/master at v0.12.0rc1-127-gec8920a + - should address FTBFS due to failing tests on big endians + + -- Yaroslav Halchenko Sat, 20 Jul 2013 09:23:04 -0400 + +pandas (0.12.0~rc1+git112-gb79996c-1) experimental; urgency=low + + * Fresh git snapshot of upstream candidate release. Experimental build + to verify functioning across the ports. + * debian/control + - dedented last "paragraph" to break it away from the 2nd one. + Thanks Beatrice Torracca for the detailed report (Closes: #712260) + - Depends on python-six now + * debian/{,tests/}control + - added python{,3}-bs4, python-html5lib to Build-Depends for more + thorough testing + + -- Yaroslav Halchenko Thu, 18 Jul 2013 13:15:19 -0400 + +pandas (0.11.0-2) unstable; urgency=low + + [ Yaroslav Halchenko ] + * Upload to unstable -- this upstream release addressed Cython 0.19 + compatibility issue (Closes: #710608) + * Recommends numexpr + * Re-cythonized using Cython 0.19 + + [ Dmitry Shachnev ] + * debian/tests/unittests3: use nosetests3 instead of nosetests-3.x. + + -- Yaroslav Halchenko Mon, 03 Jun 2013 11:57:43 -0400 + +pandas (0.11.0-1) experimental; urgency=low + + * New upstream release + + -- Yaroslav Halchenko Tue, 23 Apr 2013 22:40:15 -0400 + +pandas (0.10.1-1) experimental; urgency=low + + * New upstream release + + -- Yaroslav Halchenko Tue, 22 Jan 2013 13:07:31 -0500 + +pandas (0.10.0-1) experimental; urgency=low + + * New upstream release + - drops python 2.5 support (we are dropping pyversions in favor of + X-Python-Version) + * debian/patches: + - all previous are in upstream now, dropped locally + - added -dsc-patch'es for systems without cython3 + * debian/control: + - added python-statsmodels for the extended tests coverage + + -- Yaroslav Halchenko Mon, 17 Dec 2012 12:27:25 -0500 + +pandas (0.9.1-2) unstable; urgency=low + + [ Julian Taylor ] + * Provide python3 packages + * Add autopkgtests + * debian/patches: + - relax-float-tests.patch: + replace float equality tests with almost equal + - fix-endian-tests.patch: + patch from upstream to fix the test failure on big endian machines + + [ Yaroslav Halchenko ] + * Upload to unstable + * Dropping pysupport + * debian/rules: + - slight reduction of code duplication between python 2 and 3 + - cythonize for both python 2 and 3 into separate directories + + -- Yaroslav Halchenko Sat, 01 Dec 2012 22:57:47 -0500 + +pandas (0.9.1-1) experimental; urgency=low + + * New upstream release + * Boosted policy to 3.9.3 (no due changes) + * debian/rules + - Fixed up cleaning up of cythonized files + + -- Yaroslav Halchenko Wed, 14 Nov 2012 09:44:14 -0500 + +pandas (0.9.0-1) experimental; urgency=low + + * New upstream release + + -- Yaroslav Halchenko Sun, 07 Oct 2012 21:26:23 -0400 + +pandas (0.9.0~rc2-1) experimental; urgency=low + + * New upstream release candidate + + -- Yaroslav Halchenko Fri, 21 Sep 2012 10:27:52 -0400 + +pandas (0.8.1-1) unstable; urgency=low + + * Primarily a bugfix upstream release. + * up_tag_yahoo_test_requiring_network patch removed. + + -- Yaroslav Halchenko Sun, 22 Jul 2012 20:13:16 -0400 + +pandas (0.8.0-2) unstable; urgency=medium + + * up_tag_yahoo_test_requiring_network patch cherry-picked from upstream + GIT so that tests would not be excercised at package build time + (Closes: #681449) + + -- Yaroslav Halchenko Fri, 13 Jul 2012 08:54:41 -0400 + +pandas (0.8.0-1) unstable; urgency=low + + * Fresh upstream release + * debian/control + - drop python-statsmodels from Build-Depends since it might not be yet + available on some architectures and is not critical for the test + - recommend python-statsmodels instead of deprecated + python-scikits.statsmodels + + -- Yaroslav Halchenko Fri, 29 Jun 2012 13:02:28 -0400 + +pandas (0.8.0~rc2+git26-g76c6351-1) experimental; urgency=low + + * Fresh upstream release candidate + - all patches dropped (upstreamed) + - requires numpy >= 1.6 + + -- Yaroslav Halchenko Tue, 12 Jun 2012 13:23:27 -0400 + +pandas (0.7.3-1) unstable; urgency=low + + * Fresh upstream release + - few post-release patches (submitted upstream) to exclude unittests + requiring network access + * debian/control: + - python-openpyxl, python-xlwt, python-xlrd into Build-Depends + and Recommends + * debian/rules: + - exclude running tests marked with @network + + -- Yaroslav Halchenko Thu, 12 Apr 2012 11:27:31 -0400 + +pandas (0.7.1+git1-ga2e86c2-1) unstable; urgency=low + + * New upstream release with a bugfix which followed + + -- Yaroslav Halchenko Thu, 01 Mar 2012 22:28:10 -0500 + +pandas (0.7.0-1) unstable; urgency=low + + * New upstream release + * Updated pre-cythoned .c files for older Debian/Ubuntu releases. + Added a stamp file with upstream version to assure up-to-dateness + of the generated files + * Dropped all exclusions of unittests and patches -- shouldn't be necessary + any longer + * Build only for requested versions (not all supported) of Python + * Do nothing for build operation, rely on overloaded install + (to avoid undesired re-cythonization on elderly Ubuntus) + * Adjusted url in watch due to migration of repository under pydata + organization + + -- Yaroslav Halchenko Mon, 16 Jan 2012 19:31:50 -0500 + +pandas (0.6.1-1) UNRELEASED; urgency=low + + * New upstream release + * python-tk into Build-Depends + * Create matplotlibrc with backend: Agg to allow tests run without $DISPLAY + * Carry pre-cythonized .c files for systems with older Cython + * Skip few tests known to fail + + -- Yaroslav Halchenko Tue, 13 Dec 2011 18:36:11 -0500 + +pandas (0.5.0+git7-gcf32be2-1) unstable; urgency=low + + * New upstream release with post-release fixes + + -- Yaroslav Halchenko Tue, 01 Nov 2011 21:15:06 -0400 + +pandas (0.4.3-1) unstable; urgency=low + + * New upstream release(s): primarily bugfixes and optimizations but also + with some minor API changes and new functionality + * Adjusted debian/watch to match new layout on github + + -- Yaroslav Halchenko Tue, 18 Oct 2011 11:27:50 -0400 + +pandas (0.4.1-1) unstable; urgency=low + + * New upstream bugfix release + - incorporated all debian/patches + * debian/rules: 'clean' removes generated pandas/version.py + * debian/copyright: adjusted to become DEP-5 compliant + + -- Yaroslav Halchenko Sun, 25 Sep 2011 21:48:30 -0400 + +pandas (0.4.0-1) unstable; urgency=low + + * Initial Debian release (Closes: #641464) + + -- Yaroslav Halchenko Tue, 13 Sep 2011 12:24:05 -0400 diff --git a/contributors_list.txt b/contributors_list.txt new file mode 100644 index 00000000..20353d3c --- /dev/null +++ b/contributors_list.txt @@ -0,0 +1,3315 @@ +Current to version 2.1.4 (generated by git shortlog -ns) +There may be multiple entries for the same person if they have used more than one (form of their) name +https://github.com/pandas-dev/pandas/graphs/contributors + + 4562 jbrockmendel + 3130 Wes McKinney + 3043 jreback + 1690 Jeff Reback + 1315 Joris Van den Bossche + 1078 Matthew Roeschke + 943 y-p + 758 Tom Augspurger + 698 Patrick Hoefler + 630 Chang She + 622 Simon Hawkins + 607 Phillip Cloud + 464 gfyoung + 344 sinhrks + 327 Adam Klein + 290 Richard Shadrach + 278 Terji Petersen + 264 William Ayd + 245 Marc Garcia + 196 MomIsBestFriend + 188 Torsten Wörtwein + 183 Thomas Li + 180 Marco Edward Gorelli + 178 patrick + 168 Daniel Saxton + 160 Andy Hayden + 160 Lumberbot (aka Jack) + 152 Luke Manley + 148 topper-123 + 144 Fangchen Li + 128 Jeff Tratner + 122 Jeffrey Tratner + 119 attack68 + 115 Marco Gorelli + 110 Dea María Léon + 109 Vytautas Jancauskas + 102 Matthew Zeitlin + 93 Jeremy Schendel + 93 Pietro Battiston + 89 Kaiqi Dong + 89 Skipper Seabold + 86 alimcmaster1 + 85 h-vetinari + 84 JHM Darbyshire + 84 Stephan Hoyer + 80 Kevin Sheppard + 77 Natalia Mokeeva + 76 Wouter Overmeire + 74 Andrew Wieteska + 70 jschendel + 66 Maxim Ivanov + 65 Sinhrks + 62 Martin Winkel + 61 TomAugspurger + 60 Mortada Mehyar + 57 Christopher Whelan + 55 Chris + 55 Thomas Kluyver + 54 behzad nouri + 52 Irv Lustig + 49 Ka Wo Chen + 48 Thierry Moisan + 43 Kieran O'Mahony + 42 Dieter Vandenbussche + 38 Paul Reidy + 34 chris-b1 + 33 Evan Wright + 32 Jonas Haag + 32 bwignall + 31 Jan Schulz + 31 Mak Sze Chun + 30 Shoham Debnath + 30 partev + 29 Yaroslav Halchenko + 29 immerrr + 28 David Stephens + 27 Avinash Pancham + 27 Khor Chean Wei + 26 Gábor Lipták + 26 Justin Zheng + 26 github-actions[bot] + 26 realead + 25 Stephen Lin + 25 Thein Oo + 25 rockg + 24 Erfan Nariman + 23 Fabian Haase + 23 Yao Xiao + 23 Yuanhao Geng + 22 Licht Takeuchi + 22 Ming Li + 22 ganevgv + 21 Ryan Nazareth + 21 liang3zy22 + 21 moink + 20 Alex Kirko + 20 DSM + 20 Dan Birken + 20 lexual + 19 Abraham Flaxman + 19 Artemy Kolchinsky + 18 Ali McMaster + 18 Farhan Reynaldo + 18 Kerby Shedden + 18 Noa Tamir + 18 Robert de Vries + 18 pilkibun + 18 unutbu + 17 Aidan Feldman + 17 Anthonios Partheniou + 17 Nicolas Bonnotte + 17 Tim Swast + 17 Uwe L. Korn + 16 Jiaxiang + 16 Matt Roeschke + 16 Parfait Gasana + 16 Saurav Chakravorty + 16 Zhengbo Wang + 16 danielballan + 16 mzeitlin11 + 16 onesandzeroes + 15 Abdullah Ä°hsan Seçer + 15 Tobias Brandt + 15 seth-p + 14 Christopher C. Aycock + 14 Dr. Irv + 14 Gregory Rome + 14 Maximilian Roos + 14 Roy Hyunjin Han + 14 Spencer Lyon + 14 dataxerik + 14 locojaydev + 14 rhshadrach + 13 Alex Rothberg + 13 John W. O'Brien + 13 Jonathan Chambers + 13 Todd Jennings + 13 Vaibhav Vishal + 13 willpeppo + 12 Albert Villanova del Moral + 12 Alex Rychyk + 12 Bharat Raghunathan + 12 Luca Beltrame + 12 PKEuS + 12 Pandas Development Team + 12 Richard T. Guy + 12 Thomas Smith + 12 Tommy + 12 Wenhuan + 11 Andrew Rosenfeld + 11 Daniel Himmelstein + 11 Joe Jevnik + 11 John Zangwill + 11 Keith Hughitt + 11 anmyachev + 11 proost + 11 terrytangyuan + 10 Aaron Critchley + 10 Alexander Ponomaroff + 10 Andrew Hawyrluk + 10 Anjali2019 + 10 Dale Jung + 10 Daniel Isaac + 10 DriesS + 10 Eric Leung + 10 Felix Dulys + 10 Garrett Drapala + 10 John McNamara + 10 K.-Michael Aye + 10 Kendall Masse + 10 Martin Blais + 10 Nick Eubank + 10 Sam Foo + 10 Shahar Naveh + 10 cbertinato + 10 luke396 + 10 rmhowe425 + 9 3vts + 9 Damien Garaud + 9 Deepyaman Datta + 9 Guillaume Gay + 9 Jack Goldsmith + 9 Jacob Schaer + 9 Michael Marino + 9 Shao Yang Hong + 9 Tobias Pitters + 9 Tong SHEN + 9 Vasily Litvinov + 9 Viktor Kerkez + 9 cleconte987 + 9 poloso + 8 Adam J. Stewart + 8 Aly Sivji + 8 Brandon Bradley + 8 Chuck Cadman + 8 Conrad Mcgee Stocks + 8 Dr-Irv + 8 Hugh Kelley + 8 Joel Nothman + 8 Kalyan Gokhale + 8 Mike Kelly + 8 Oleh Kozynets + 8 OlivierLuG + 8 RaisaDZ + 8 Shawn Heide + 8 Sylvain Marié + 8 Thomas Grainger + 8 Varun + 8 Vyom Pathak + 8 himanshu awasthi + 8 iasoon + 8 jnmclarty + 8 rebecca-palmer + 8 tpaxman + 7 Benedikt Sauer + 7 Chuanzhu Xu + 7 Dan Allan + 7 Daniel Schmidt + 7 Dennis Chukwunta + 7 Derek McCammond + 7 Francis T. O'Donovan + 7 Honfung Wong + 7 Janosh Riebesell + 7 Jason Sexauer + 7 Johannes Mueller + 7 Kernc + 7 Kostya Farber + 7 Michael Mueller + 7 Nirav + 7 Quang Nguyễn + 7 Rajat Subhra Mukherjee + 7 Robin to Roxel + 7 Rushabh Vasani + 7 Samesh Lakhotia + 7 Stijn Van Hoey + 7 Takafumi Arakaki + 7 Thomas A Caswell + 7 Winterflower + 7 Xiao Yuan + 7 Younggun Kim + 7 Yury Mikhaylov + 7 abonte + 7 dependabot[bot] + 7 dsm054 + 7 ftrihardjo + 7 nipunreddevil + 7 nrebena + 7 scls19fr + 7 themien + 7 uzzell + 6 Aarni Koskela + 6 ArtinSarraf + 6 Asish Mahapatra + 6 Benjamin Rowell + 6 Bill + 6 Brad Buran + 6 Bran Yang + 6 Brian Wignall + 6 Chris Whelan + 6 David Bew + 6 FactorizeD + 6 Garrett-R + 6 Graham Inggs + 6 HH-MWB + 6 Jeff Carey + 6 Kashif Khan + 6 Kelsey Jordahl + 6 Loic Diridollou + 6 Mateusz Woś + 6 Matt Kirk + 6 Matti Picus + 6 Micael Jarniac + 6 Neil Parley + 6 Nicholaus E. 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Haaland + 1 Å těpán Műller + 1 颜发才（Yan Facai） + 1 김동현 (Daniel Donghyun Kim) + +Debian packaging + 545 Rebecca N. Palmer + 323 Yaroslav Halchenko + 49 Mo Zhou + 38 Andreas Tille + 26 Graham Inggs + 7 Jochen Sprickerhof + 4 Dmitry Shachnev + 2 Julian Taylor + 2 Yaroslav O Halchenko + 1 Diane Trout + 1 Ole Streicher diff --git a/control b/control new file mode 100644 index 00000000..38ca492b --- /dev/null +++ b/control @@ -0,0 +1,230 @@ +Source: pandas +Maintainer: Debian Science Team +Uploaders: Yaroslav Halchenko , + Michael Hanke , + Rebecca N. Palmer +Section: python +Priority: optional +Build-Depends: debhelper-compat (= 13), + dh-python, + faketime, + locales-all, + python3-all-dev, + cython3 (>= 0.29.33~), +# we don't have this version python3-blosc (>= 1.21.0~) , + python3-bottleneck (>= 1.3.4~) , + python3-bs4 (>= 4.11.1~) , + python3-dask (>= 2023.2.0~) , + python3-dateutil, + python3-fsspec (>= 2022.05.0~) , + python3-html5lib (>= 1.1~) , + python3-hypothesis (>= 6.46.1~) , + python3-jinja2 (>= 3.1.2~) , + python3-lxml (>= 4.8.0~) , + python3-matplotlib (>= 3.6.1~) [!ia64 !loong64 !powerpc !sparc64 !x32] , +# numba has a history of bugs on non-x86, e.g. #1033907 +# architectures here are the ones on which to treat numba-related failures as RC - see also debian/tests/control +# temporarily disabled as numba is not in testing #1033907 python3-numba (>= 0.55.2~) [amd64 i386 ppc64el] , + python3-numexpr (>= 2.8.0~) , + python3-numpy (>= 1:1.23.2~), + python3-odf (>= 1.4.1~) , + python3-openpyxl (>= 3.0.10~) , +# doesn't seem to work in this test environment python3-psycopg2 (>= 2.9.3~) , + python3-py , +# doesn't seem to work in this test environment python3-pymysql (>= 1.0.2~) , + python3-pyreadstat (>= 1.1.5~) [!ia64 !loong64 !sparc64 !x32] , + python3-pytest (>= 7.3.2~) , + python3-pytest-asyncio (>= 0.17~) , + python3-pytest-forked , + python3-pytest-localserver , + python3-pytest-xdist (>= 2.2.0~) , +# we don't have python3-pyxlsb + python3-scipy (>= 1.8.1~), + python3-setuptools (>= 51~), +# we don't have this version python3-snappy (>= 0.6.0~) , + python3-sqlalchemy (>= 1.4.36~) [!ia64 !hppa !sh4 !x32] , +# python3-tables is now little-endian only, and also unavailable on some ports + python3-tables (>= 3.7.0~) [!s390x !hppa !powerpc !ppc64 !sparc64 !hurd-any !alpha] , +# we don't have this version python3-tabulate (>= 0.8.10~) , + python3-tk , + python3-tz (>= 2022.1~) , +# we don't have this version python3-xlrd (>= 2.0.1~) , +# we don't have this version python3-xlsxwriter (>= 3.0.3~) , + python3-versioneer, + python3-zstandard (>= 0.17.0~) , + sphinx-common, +# for tests/examples that use old-style timezone names + tzdata-legacy , + xvfb , + xauth , + xsel +Build-Depends-Indep: python3-sphinx , + python3-sphinx-copybutton , + python3-sphinx-design , + python3-pydata-sphinx-theme , + python3-ipykernel , + python3-notebook (>= 6.0.3~) , + python3-nbconvert (>= 6.4.5~) , + python3-nbsphinx , + python3-numpydoc , + python3-pygments , + ipython3 (>= 7.11.1~) , + jdupes , +# for style.ipynb + pandoc , +# for intersphinx inventories + python3-doc , +# no longer exists python-numpy-doc , + python-scipy-doc , +# no longer exists python-matplotlib-doc , + python-statsmodels-doc , +# these are for not having (as many) exception messages in documentation examples +# so may be temporarily removed if they are broken or to break bootstrap cycles +# not in Debian (not to be confused with python3-arrow) python3-pyarrow , +#fails with KeyError 'state', possibly nbconvert bug 1731 python3-ipywidgets , + python3-rpy2 , + python3-seaborn , + python3-sqlalchemy , + python3-statsmodels , + python3-xarray (>= 2022.03.0~) , +Standards-Version: 4.7.0 +Vcs-Browser: https://salsa.debian.org/science-team/pandas +Vcs-Git: https://salsa.debian.org/science-team/pandas.git +Homepage: https://pandas.pydata.org/ +Rules-Requires-Root: no + +Package: python3-pandas +Architecture: all +Depends: ${misc:Depends}, + ${python3:Depends}, + python3-numpy, + python3-dateutil, + python3-pandas-lib (>= ${source:Upstream-Version}), +# should maybe have a python3-pandas-lib (<< ${source:Upstream-Version}.0), as well, but that leaves arch:all BD-Uninstallable if arch:amd64 builds first + python3-pkg-resources, + tzdata +Recommends: python3-scipy, + python3-matplotlib, + python3-tz, +# for faster processing +# see -lib for python3-numba + python3-bottleneck, + python3-numexpr, +# for spreadsheet I/O + python3-odf, + python3-openpyxl, +# for HTML table I/O + python3-bs4, + python3-html5lib, + python3-lxml, +# for HDF5 I/O + python3-tables, +# for styled output + python3-jinja2 +Suggests: python-pandas-doc, + python3-statsmodels +Breaks: +# 1.1 -> 1.3 API breaks, see #999415 + python3-cfgrib (<= 0.9.9-1), + python3-joypy (<= 0.2.2-2), +# 1.4 -> 1.5 API breaks, see #1022571 + python3-statsmodels (<< 0.13.5~), +# 1.5 -> 2.1 API breaks, #1043240 + augur (<= 24.0.0-1), + cnvkit (<< 0.9.10~), + python3-altair (<< 5.0.1~), + python3-anndata (<= 0.8.0-4), + python3-biom-format (<< 2.1.15.2-3~), + python3-cooler (<< 0.9.3~), + python3-dask (<< 2023.12.1~), + python3-dials (<< 3.17.0~), + python3-dyda (<= 1.41.1-1.1), + python3-emperor (<< 1.0.3+ds-9~), + python3-esda (<= 2.5.1-1), + python3-feather-format (<< 0.3.1+dfsg1-8~), + python3-hypothesis (<< 6.83.1~), +# broken tests but probably not broken actual package python3-influxdb (<= 5.3.1-5), + python3-jsonpickle (<< 3.0.2+dfsg-1~), + python3-mirtop (<< 0.4.25-5~), + python3-nanoget (<< 1.19.3~), + python3-pauvre (<< 0.2.3-3~), + python3-pyani (<< 0.2.12-3~), + python3-pymatgen (<< 2024.1.27~), + python3-pyranges (<= 0.0.111+ds-6), + python3-seaborn (<< 0.13.0~), + python3-skbio (<< 0.5.9~), + python3-sklearn-pandas (<= 2.2.0-1.1), + python3-sunpy (<< 5.1.0-1~), +# broken tests but probably not broken actual package python3-tqdm (<= 4.64.1-1), +# python3-ulmo affected test no longer run but not actually fixed + python3-ulmo (<= 0.8.8+dfsg1-2), + python3-upsetplot (<< 0.8.0-3~), + python3-xarray-sentinel (<< 0.9.5+ds-2~), + q2-cutadapt (<< 2023.7.0-1~), + q2-demux (<= 2023.9.1+dfsg-1), + q2-quality-control (<= 2022.11.1-2), + q2-taxa (<= 2023.9.0+dfsg-1), + q2-types (<= 2023.9.0-1), + q2templates (<= 2023.9.0+ds-1) +Description: data structures for "relational" or "labeled" data + pandas is a Python package providing fast, flexible, and expressive + data structures designed to make working with "relational" or + "labeled" data both easy and intuitive. It aims to be the fundamental + high-level building block for doing practical, real world data + analysis in Python. pandas is well suited for many different kinds of + data: + . + - Tabular data with heterogeneously-typed columns, as in an SQL + table or Excel spreadsheet + - Ordered and unordered (not necessarily fixed-frequency) time + series data. + - Arbitrary matrix data (homogeneously typed or heterogeneous) with + row and column labels + - Any other form of observational / statistical data sets. The data + actually need not be labeled at all to be placed into a pandas + data structure + . + This package contains the Python 3 version. + +Package: python-pandas-doc +Architecture: all +Section: doc +Depends: ${misc:Depends}, + ${sphinxdoc:Depends}, + libjs-mathjax +Suggests: python3-pandas +Multi-Arch: foreign +Description: data structures for "relational" or "labeled" data - documentation + pandas is a Python package providing fast, flexible, and expressive + data structures designed to make working with "relational" or + "labeled" data both easy and intuitive. It aims to be the fundamental + high-level building block for doing practical, real world data + analysis in Python. pandas is well suited for many different kinds of + data: + . + - Tabular data with heterogeneously-typed columns, as in an SQL + table or Excel spreadsheet + - Ordered and unordered (not necessarily fixed-frequency) time + series data. + - Arbitrary matrix data (homogeneously typed or heterogeneous) with + row and column labels + - Any other form of observational / statistical data sets. The data + actually need not be labeled at all to be placed into a pandas + data structure + . + This package contains the documentation. + +Package: python3-pandas-lib +Architecture: any +Multi-Arch: same +Depends: ${misc:Depends}, + ${shlibs:Depends}, + ${python3:Depends}, + python3-numpy +# this is here to allow it to be arch-specific, to avoid numba bugs on other architectures +Recommends: python3-numba [amd64] +Description: low-level implementations and bindings for pandas + This is a low-level package for python3-pandas providing + architecture-dependent extensions. + . + Users should not need to install it directly. diff --git a/copyright b/copyright new file mode 100644 index 00000000..ac4240bf --- /dev/null +++ b/copyright @@ -0,0 +1,743 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: pandas +Upstream-Contact: pandas-dev@python.org +Source: https://github.com/pandas-dev/pandas +Files-Excluded: doc/source/user_guide/cookbook.rst + .gitignore + .gitattributes +Comment: cookbook has around 100 Stack Overflow snippets (CC-BY-SA with possibly inadequate attribution), the other omissions are for non-copyright potential breakage + +Files: * +Copyright: 2008-2023 AQR Capital Management, LLC, Lambda Foundry, Inc., PyData Development Team, Open source contributors +License: BSD-3 +Comment: Lumped together as notices disagree on which ones are which years. See contributors_list.txt for a full list of commit authors. The original source contains some CC-BY-SA snippets by Stack Overflow users (https://stackoverflow.com/users/1114/jeremy-banks, https://stackoverflow.com/users/387251/oliver, https://stackoverflow.com/users/3297752/noah-motion, https://stackoverflow.com/users/925671/bill, https://stackoverflow.com/users/1082349/foobar, https://stackoverflow.com/users/3089209/crantila, https://stackoverflow.com/users/2375855/ojdo, https://stackoverflow.com/users/487339/dsm, https://stackoverflow.com/users/2677943/swenzel), but these may be too small to be copyrightable, and the less trivial ones are patched out in this package + +Files: doc/sphinxext/announce.py +Copyright: 2001-2017 Enthought, Inc. and SciPy Developers. + 2017-2021 Lambda Foundry, Inc. and PyData Development Team +License: BSD-3 +Comment: it is possible that other code was also taken from Scipy + +Files: pandas/_libs/include/pandas/portable.h +Copyright: 2005-2014 Rich Felker and contributors + 2008-2019, AQR Capital Management, LLC, Lambda Foundry, Inc. and PyData Development Team +License: Expat and BSD-3 +Origin: musl (partly) +Comment: this might or might not be from a public domain part of musl + +Files: pandas/_libs/include/pandas/skiplist.h +Copyright: 2009, Raymond Hettinger + 2011-2020 Wes McKinney and PyData Development Team +License: Expat and BSD-3 +Origin: http://code.activestate.com/recipes/576930/ +Comment: it is a Cython code "inspired" by the original Python code by Raymond + +Files: pandas/_libs/include/pandas/parser/tokenizer.h + pandas/_libs/src/parser/tokenizer.c +Copyright: 2002 Michael Ringgaard + 2011-2012 Warren Weckesser + 2001-2012 Python Software Foundation and Python contributors + 2012-2022 Lambda Foundry, Inc. and PyData Development Team +License: Python and BSD-3 +Origin: csv (Python standard library), github.com/WarrenWeckesser/textreader + +Files: pandas/_libs/include/pandas/vendored/klib/* +Copyright: 2008, 2009, 2011 by Attractive Chaos +License: Expat + +Files: pandas/_libs/include/pandas/vendored/ujson/* + pandas/_libs/src/vendored/ujson/* +Copyright: 1988-1993 The Regents of the University of California + 1994 Sun Microsystems, Inc. + 2007 Nick Galbreath + 2011-2013 ESN Social Software AB and Jonas Tarnstrom + 2012-2022 Lambda Foundry, Inc. and PyData Development Team +License: BSD-3 and Expat +Origin: ultrajson + +Files: pandas/_libs/tslibs/parsing.pyx +Copyright: 2003-2011 - Gustavo Niemeyer + 2012-2014 - Tomi Pieviläinen + 2014-2016 - Yaron de Leeuw + 2015-2017 - Paul Ganssle + 2015-2017 - dateutil contributors (see AUTHORS file) + 2008-2022, AQR Capital Management, LLC, Lambda Foundry, Inc. and PyData Development Team +License: BSD-3 +Origin: dateutil (partly) + +Files: pandas/_libs/include/pandas/vendored/numpy/* + pandas/_libs/src/vendored/numpy/* +Copyright: 2005-2013, NumPy Developers +License: BSD-3 +Origin: numpy +Comment: Listed as derived from Numpy 1.7 + +Files: pandas/_libs/window/aggregations.pyx + pandas/tests/window/test_rolling.py +Copyright: 2010-2012 Archipel Asset Management AB + 2011-2022 Lambda Foundry, Inc. and PyData Development Team +License: BSD-3 +Origin: bottleneck (partly) +Comment: Original was BSD-2, but BSD-2 and BSD-3 = BSD-3 + +Files: pandas/compat/* +Copyright: 2010-2013 Benjamin Peterson + 2012-2022 Lambda Foundry, Inc. and PyData Development Team +License: Expat and BSD-3 +Origin: six + +Files: pandas/core/accessor.py +Copyright: 2014-2018 xarray developers + 2018-2021 Lambda Foundry, Inc. and PyData Development Team +License: Apache-2.0 and BSD-3 +Origin: xarray (partly) + +Files: pandas/io/clipboard/* +Copyright: 2010-2017 Albert Sweigart and Pyperclip contributors + 2016-2022 Lambda Foundry, Inc. and PyData Development Team +License: BSD-3 +Origin: Pyperclip + +Files: pandas/io/sas/sas7bdat.py +Copyright: 2015 Jared Hobbs + 2016-2022 Lambda Foundry, Inc. and PyData Development Team +Origin: https://bitbucket.org/jaredhobbs/sas7bdat +License: Expat + +Files: pandas/tests/io/data/html/banklist.html + pandas/tests/io/data/csv/banklist.csv + pandas/tests/io/data/html/spam.html +Copyright: None; 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Notwithstanding the foregoing two (2) sentences, if Creative + Commons has expressly identified itself as the Licensor hereunder, it shall have all rights and + obligations of Licensor. + . + Except for the limited purpose of indicating to the public that the Work is licensed under the CCPL, + Creative Commons does not authorize the use by either party of the trademark "Creative + Commons" or any related trademark or logo of Creative Commons without the prior written consent + of Creative Commons. Any permitted use will be in compliance with Creative Commons' then-current + trademark usage guidelines, as may be published on its website or otherwise made available upon + request from time to time. For the avoidance of doubt, this trademark restriction does not form part + of the License. + . + Creative Commons may be contacted at http://creativecommons.org/. diff --git a/gbp.conf b/gbp.conf new file mode 100644 index 00000000..8b88dba4 --- /dev/null +++ b/gbp.conf @@ -0,0 +1,7 @@ +[DEFAULT] +# the default branch for upstream sources: +upstream-branch = upstream +# the default branch for the debian patch: +debian-branch = main + + diff --git a/patches/1029251_ignore_rounding_error.patch b/patches/1029251_ignore_rounding_error.patch new file mode 100644 index 00000000..28f2c992 --- /dev/null +++ b/patches/1029251_ignore_rounding_error.patch @@ -0,0 +1,39 @@ +Description: Don't fail plot tests on rounding error + +(upstream seem to have _disabled_ the affected tests +...see also test_series) + +Author: Rebecca N. Palmer +Bug-Debian: https://bugs.debian.org/1029251 +Forwarded: no + +--- a/pandas/tests/plotting/frame/test_frame_subplots.py ++++ b/pandas/tests/plotting/frame/test_frame_subplots.py +@@ -3,6 +3,7 @@ + import string + + import numpy as np ++from numpy.testing import assert_array_almost_equal_nulp + import pytest + + from pandas.compat import is_platform_linux +@@ -435,7 +436,7 @@ class TestDataFramePlotsSubplots: + # no subplots + df = DataFrame({"A": [3] * 5, "B": list(range(1, 6))}, index=range(5)) + ax = df.plot.bar(grid=True, log=True) +- tm.assert_numpy_array_equal(ax.yaxis.get_ticklocs(), expected) ++ assert_array_almost_equal_nulp(ax.yaxis.get_ticklocs(), expected, 4) + + @pytest.mark.xfail( + np_version_gte1p24 and is_platform_linux(), +@@ -449,8 +450,8 @@ class TestDataFramePlotsSubplots: + log=True, subplots=True + ) + +- tm.assert_numpy_array_equal(ax[0].yaxis.get_ticklocs(), expected) +- tm.assert_numpy_array_equal(ax[1].yaxis.get_ticklocs(), expected) ++ assert_array_almost_equal_nulp(ax[0].yaxis.get_ticklocs(), expected, 4) ++ assert_array_almost_equal_nulp(ax[1].yaxis.get_ticklocs(), expected, 4) + + def test_boxplot_subplots_return_type_default(self, hist_df): + df = hist_df diff --git a/patches/1068104_time64.patch b/patches/1068104_time64.patch new file mode 100644 index 00000000..d72c3798 --- /dev/null +++ b/patches/1068104_time64.patch @@ -0,0 +1,30 @@ +Description: Don't require 32-bit to be time32 + +Debian armhf/armel (but not i386) are now time64 + +Author: Graham Inggs +Bug-Debian: https://bugs.debian.org/1068104 +Forwarded: no + +--- a/pandas/tests/indexes/datetimes/test_ops.py ++++ b/pandas/tests/indexes/datetimes/test_ops.py +@@ -35,7 +35,7 @@ class TestDatetimeIndexOps: + tz = tz_naive_fixture + if freq == "A" and not IS64 and isinstance(tz, tzlocal): + request.node.add_marker( +- pytest.mark.xfail(reason="OverflowError inside tzlocal past 2038") ++ pytest.mark.xfail(reason="OverflowError inside tzlocal past 2038", strict=False) + ) + + idx = date_range(start="2013-04-01", periods=30, freq=freq, tz=tz) +--- a/pandas/tests/tseries/offsets/test_common.py ++++ b/pandas/tests/tseries/offsets/test_common.py +@@ -143,7 +143,7 @@ def test_apply_out_of_range(request, tz_ + # If we hit OutOfBoundsDatetime on non-64 bit machines + # we'll drop out of the try clause before the next test + request.node.add_marker( +- pytest.mark.xfail(reason="OverflowError inside tzlocal past 2038") ++ pytest.mark.xfail(reason="OverflowError inside tzlocal past 2038", strict=False) + ) + elif ( + isinstance(tz, tzlocal) diff --git a/patches/1068422_ignore_dask_tests.patch b/patches/1068422_ignore_dask_tests.patch new file mode 100644 index 00000000..d882b92a --- /dev/null +++ b/patches/1068422_ignore_dask_tests.patch @@ -0,0 +1,35 @@ +Description: Ignore dask test failures + +(to unblock other fixes - +these are probably a real bug but not in pandas) + +Author: Rebecca N. Palmer +Bug-Debian: https://bugs.debian.org/1068422 +Forwarded: no + +--- a/pandas/tests/test_downstream.py ++++ b/pandas/tests/test_downstream.py +@@ -33,6 +33,7 @@ def df(): + return DataFrame({"A": [1, 2, 3]}) + + ++@pytest.mark.xfail(reason="dask https://bugs.debian.org/1068422",raises=TypeError,strict=False) + def test_dask(df): + try: + from multiprocessing.pool import ThreadPool +@@ -55,6 +56,7 @@ def test_dask(df): + pd.set_option("compute.use_numexpr", olduse) + + ++@pytest.mark.xfail(reason="dask https://bugs.debian.org/1068422",raises=TypeError,strict=False) + def test_dask_ufunc(): + # dask sets "compute.use_numexpr" to False, so catch the current value + # and ensure to reset it afterwards to avoid impacting other tests +@@ -74,6 +76,7 @@ def test_dask_ufunc(): + pd.set_option("compute.use_numexpr", olduse) + + ++@pytest.mark.xfail(reason="dask https://bugs.debian.org/1068422",raises=TypeError,strict=False) + def test_construct_dask_float_array_int_dtype_match_ndarray(): + # GH#40110 make sure we treat a float-dtype dask array with the same + # rules we would for an ndarray diff --git a/patches/2p1_openpyxl_errors.patch b/patches/2p1_openpyxl_errors.patch new file mode 100644 index 00000000..59774c32 --- /dev/null +++ b/patches/2p1_openpyxl_errors.patch @@ -0,0 +1,34 @@ +Description: Fix test failures when xlsxwriter is not installed + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/io/excel/test_openpyxl.py ++++ b/pandas/tests/io/excel/test_openpyxl.py +@@ -115,13 +115,13 @@ def test_engine_kwargs_append_invalid(ex + DataFrame(["good"]).to_excel(writer, sheet_name="Sheet2") + + +-@pytest.mark.parametrize("data_only, expected", [(True, 0), (False, "=1+1")]) ++@pytest.mark.parametrize("data_only, expected", [(True, None), (False, "=1+1")]) + def test_engine_kwargs_append_data_only(ext, data_only, expected): + # GH 43445 + # tests whether the data_only engine_kwarg actually works well for + # openpyxl's load_workbook + with tm.ensure_clean(ext) as f: +- DataFrame(["=1+1"]).to_excel(f) ++ DataFrame(["=1+1"]).to_excel(f, engine="openpyxl") + with ExcelWriter( + f, engine="openpyxl", mode="a", engine_kwargs={"data_only": data_only} + ) as writer: +--- a/pandas/tests/io/excel/test_writers.py ++++ b/pandas/tests/io/excel/test_writers.py +@@ -1308,6 +1308,8 @@ class TestExcelWriterEngineTests: + assert isinstance(writer, _XlsxWriter) + else: + assert isinstance(writer, klass) ++ # openpyxl raises on closing if no sheets are written ++ DataFrame().to_excel(writer, sheet_name="Sheet1") + + def test_ExcelWriter_dispatch_raises(self): + with pytest.raises(ValueError, match="No engine"): diff --git a/patches/accept_system_tzdata.patch b/patches/accept_system_tzdata.patch new file mode 100644 index 00000000..6b367cd0 --- /dev/null +++ b/patches/accept_system_tzdata.patch @@ -0,0 +1,30 @@ +Description: Don't require python3-tzdata + +Author: Rebecca N. Palmer +Bug-Debian: https://bugs.debian.org/1043968 +Forwarded: no + +--- a/pandas/_libs/tslibs/timezones.pyx ++++ b/pandas/_libs/tslibs/timezones.pyx +@@ -65,9 +65,6 @@ cdef bint is_utc_zoneinfo(tzinfo tz): + utc_zoneinfo = ZoneInfo("UTC") + except zoneinfo.ZoneInfoNotFoundError: + return False +- # Warn if tzdata is too old, even if there is a system tzdata to alert +- # users about the mismatch between local/system tzdata +- import_optional_dependency("tzdata", errors="warn", min_version="2022.1") + + return tz is utc_zoneinfo + +--- a/pyproject.toml ++++ b/pyproject.toml +@@ -33,8 +33,7 @@ dependencies = [ + "numpy>=1.23.2,<2; python_version=='3.11'", + "numpy>=1.26.0,<2; python_version>='3.12'", + "python-dateutil>=2.8.2", +- "pytz>=2020.1", +- "tzdata>=2022.1" ++ "pytz>=2020.1" + ] + classifiers = [ + 'Development Status :: 5 - Production/Stable', diff --git a/patches/allow_no_matplotlib.patch b/patches/allow_no_matplotlib.patch new file mode 100644 index 00000000..b1531240 --- /dev/null +++ b/patches/allow_no_matplotlib.patch @@ -0,0 +1,24 @@ +Description: Don't try to run matplotlib-using tests without it + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/io/formats/style/test_style.py ++++ b/pandas/tests/io/formats/style/test_style.py +@@ -14,6 +14,7 @@ from pandas import ( + option_context, + ) + import pandas._testing as tm ++import pandas.util._test_decorators as td + + jinja2 = pytest.importorskip("jinja2") + from pandas.io.formats.style import ( # isort:skip +@@ -756,7 +757,7 @@ class TestStyler: + df.style.map(color_negative_red, subset=pct_subset) + + @pytest.mark.parametrize( +- "stylefunc", ["background_gradient", "bar", "text_gradient"] ++ "stylefunc", [pytest.param("background_gradient", marks=td.skip_if_no("matplotlib")), "bar", pytest.param("text_gradient", marks=td.skip_if_no("matplotlib"))] + ) + def test_subset_for_boolean_cols(self, stylefunc): + # GH47838 diff --git a/patches/allow_no_openpyxl.patch b/patches/allow_no_openpyxl.patch new file mode 100644 index 00000000..58de0898 --- /dev/null +++ b/patches/allow_no_openpyxl.patch @@ -0,0 +1,25 @@ +Description: Mark tests that need openpyxl + +(These do the usual loop through engine/read_ext but +actually use .xlsx every time) + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/io/excel/test_readers.py ++++ b/pandas/tests/io/excel/test_readers.py +@@ -1645,12 +1645,14 @@ class TestExcelFileRead: + expected = pd.read_excel("test1" + read_ext, engine=engine) + tm.assert_frame_equal(result, expected) + ++ @td.skip_if_no("openpyxl") + def test_read_excel_header_index_out_of_range(self, engine): + # GH#43143 + with open("df_header_oob.xlsx", "rb") as f: + with pytest.raises(ValueError, match="exceeds maximum"): + pd.read_excel(f, header=[0, 1]) + ++ @td.skip_if_no("openpyxl") + @pytest.mark.parametrize("filename", ["df_empty.xlsx", "df_equals.xlsx"]) + def test_header_with_index_col(self, filename): + # GH 33476 diff --git a/patches/armel_ignore_nonwarning.patch b/patches/armel_ignore_nonwarning.patch new file mode 100644 index 00000000..e717014d --- /dev/null +++ b/patches/armel_ignore_nonwarning.patch @@ -0,0 +1,77 @@ +Description: Don't require a warning armel numpy doesn't have + +Author: Rebecca N. Palmer +Forwarded: no (this version requires dpkg) + +--- a/pandas/tests/apply/test_str.py ++++ b/pandas/tests/apply/test_str.py +@@ -70,6 +70,12 @@ def test_apply_np_reducer(op, how): + @pytest.mark.parametrize("how", ["transform", "apply"]) + def test_apply_np_transformer(float_frame, op, how): + # GH 39116 ++ # armel numpy currently doesn't have the invalid log/sqrt warning (see 1.4.3-1 build log, ++ # possibly the same underlying issue as statsmodels https://bugs.debian.org/956882) ++ # using nullcontext() instead of warn=None to not start failing if this ever gets fixed ++ import subprocess ++ import contextlib ++ debian_arch = subprocess.run(["dpkg","--print-architecture"],capture_output=True).stdout + + # float_frame will _usually_ have negative values, which will + # trigger the warning here, but let's put one in just to be sure +@@ -78,7 +84,7 @@ def test_apply_np_transformer(float_fram + if op in ["log", "sqrt"]: + warn = RuntimeWarning + +- with tm.assert_produces_warning(warn, check_stacklevel=False): ++ with (contextlib.nullcontext() if (debian_arch==b'armel\n') else tm.assert_produces_warning(warn, check_stacklevel=False)): + # float_frame fixture is defined in conftest.py, so we don't check the + # stacklevel as otherwise the test would fail. + result = getattr(float_frame, how)(op) +--- a/pandas/tests/apply/test_invalid_arg.py ++++ b/pandas/tests/apply/test_invalid_arg.py +@@ -323,6 +323,12 @@ def test_transform_wont_agg_frame(axis, + with pytest.raises(ValueError, match=msg): + float_frame.transform(func, axis=axis) + ++# armel numpy currently doesn't have the invalid log/sqrt warning (see 1.4.3-1 build log, ++# possibly the same underlying issue as statsmodels https://bugs.debian.org/956882) ++# using nullcontext() instead of warn=None to not start failing if this ever gets fixed ++import subprocess ++import contextlib ++debian_arch = subprocess.run(["dpkg","--print-architecture"],capture_output=True).stdout + + @pytest.mark.parametrize("func", [["min", "max"], ["sqrt", "max"]]) + def test_transform_wont_agg_series(string_series, func): +@@ -333,7 +339,7 @@ def test_transform_wont_agg_series(strin + warn = RuntimeWarning if func[0] == "sqrt" else None + warn_msg = "invalid value encountered in sqrt" + with pytest.raises(ValueError, match=msg): +- with tm.assert_produces_warning(warn, match=warn_msg, check_stacklevel=False): ++ with (contextlib.nullcontext() if (debian_arch==b'armel\n') else tm.assert_produces_warning(warn, match=warn_msg, check_stacklevel=False)): + string_series.transform(func) + + +--- a/pandas/tests/io/parser/test_c_parser_only.py ++++ b/pandas/tests/io/parser/test_c_parser_only.py +@@ -56,6 +56,12 @@ def test_delim_whitespace_custom_termina + expected = DataFrame([[1, 2, 3], [4, 5, 6], [7, 8, 9]], columns=["a", "b", "c"]) + tm.assert_frame_equal(df, expected) + ++# armel numpy currently doesn't have some invalid warnings (see 2.0.3+dfsg-3 build log, ++# possibly the same underlying issue as statsmodels https://bugs.debian.org/956882) ++# using nullcontext() instead of warn=None to not start failing if this ever gets fixed ++import subprocess ++import contextlib ++debian_arch = subprocess.run(["dpkg","--print-architecture"],capture_output=True).stdout + + def test_dtype_and_names_error(c_parser_only): + # see gh-8833: passing both dtype and names +@@ -91,7 +97,7 @@ nan 2 + # fallback casting, but not castable + warning = RuntimeWarning if np_version_gte1p24 else None + with pytest.raises(ValueError, match="cannot safely convert"): +- with tm.assert_produces_warning(warning, check_stacklevel=False): ++ with (contextlib.nullcontext() if (debian_arch==b'armel\n') else tm.assert_produces_warning(warning, check_stacklevel=False)): + parser.read_csv( + StringIO(data), + sep=r"\s+", diff --git a/patches/contributor_list_not_in_tarball.patch b/patches/contributor_list_not_in_tarball.patch new file mode 100644 index 00000000..460313b8 --- /dev/null +++ b/patches/contributor_list_not_in_tarball.patch @@ -0,0 +1,28 @@ +Description: Don't try to read a contributor list from the git log + +Debian packages are built from tarballs, so there isn't a git log. + +Author: Rebecca N. Palmer +Forwarded: not-needed + +--- a/doc/sphinxext/contributors.py ++++ b/doc/sphinxext/contributors.py +@@ -14,10 +14,8 @@ use:: + While the v0.23.1 tag does not exist, that will use the HEAD of the + branch as the end of the revision range. + """ +-from announce import build_components + from docutils import nodes + from docutils.parsers.rst import Directive +-import git + + + class ContributorsDirective(Directive): +@@ -25,6 +23,7 @@ class ContributorsDirective(Directive): + name = "contributors" + + def run(self): ++ return [nodes.paragraph(), nodes.Text("For contributors, please see /usr/share/doc/contributors_list.txt or https://github.com/pandas-dev/pandas/graphs/contributors")] + range_ = self.arguments[0] + if range_.endswith("x..HEAD"): + return [nodes.paragraph(), nodes.bullet_list()] diff --git a/patches/deb_disable_googleanalytics.patch b/patches/deb_disable_googleanalytics.patch new file mode 100644 index 00000000..9496ed69 --- /dev/null +++ b/patches/deb_disable_googleanalytics.patch @@ -0,0 +1,91 @@ +Description: Avoid privacy breach by Google Analytics + +Author: Yaroslav Halchenko , + Andreas Tille , + Rebecca N. Palmer +Forwarded: not-needed + +--- a/pandas/tests/io/data/html/spam.html ++++ b/pandas/tests/io/data/html/spam.html +@@ -27,45 +27,9 @@ + + + +- +- ++ + + + +@@ -794,4 +758,4 @@ handler: function() {this.cancel();}, +   Software v.1.2.2 + + +- +\ No newline at end of file ++ +--- a/web/pandas/_templates/layout.html ++++ b/web/pandas/_templates/layout.html +@@ -1,13 +1,6 @@ + + + +- +- + pandas - Python Data Analysis Library + + +--- a/doc/source/conf.py ++++ b/doc/source/conf.py +@@ -240,7 +240,6 @@ html_theme_options = { + "footer_start": ["pandas_footer", "sphinx-version"], + "github_url": "https://github.com/pandas-dev/pandas", + "twitter_url": "https://twitter.com/pandas_dev", +- "analytics": {"google_analytics_id": "G-5RE31C1RNW"}, + "logo": {"image_dark": "https://pandas.pydata.org/static/img/pandas_white.svg"}, + "navbar_end": ["version-switcher", "theme-switcher", "navbar-icon-links"], + "switcher": { diff --git a/patches/deb_doc_donotoverride_PYTHONPATH.patch b/patches/deb_doc_donotoverride_PYTHONPATH.patch new file mode 100644 index 00000000..3fa2c269 --- /dev/null +++ b/patches/deb_doc_donotoverride_PYTHONPATH.patch @@ -0,0 +1,21 @@ +Description: Don't try to import from the source directory + +Needed as we build the extension modules elsewhere + +Author: Yaroslav Halchenko +Forwarded: not-needed + +--- a/doc/make.py ++++ b/doc/make.py +@@ -353,8 +353,9 @@ def main(): + # external libraries (namely Sphinx) to compile this module and resolve + # the import of `python_path` correctly. The latter is used to resolve + # the import within the module, injecting it into the global namespace +- os.environ["PYTHONPATH"] = args.python_path +- sys.path.insert(0, args.python_path) ++ # Debian: we set it outside ++ #os.environ["PYTHONPATH"] = args.python_path ++ #sys.path.insert(0, args.python_path) + globals()["pandas"] = importlib.import_module("pandas") + + # Set the matplotlib backend to the non-interactive Agg backend for all diff --git a/patches/deb_nonversioneer_version.patch b/patches/deb_nonversioneer_version.patch new file mode 100644 index 00000000..c81eafc8 --- /dev/null +++ b/patches/deb_nonversioneer_version.patch @@ -0,0 +1,57 @@ +Description: Don't try to use git to find the version number + +Needed as Debian buildds use tarballs + +Author: Yaroslav Halchenko +Forwarded: not-needed + +--- a/pandas/__init__.py ++++ b/pandas/__init__.py +@@ -183,12 +183,7 @@ try: + + _built_with_meson = True + except ImportError: +- from pandas._version import get_versions +- +- v = get_versions() +- __version__ = v.get("closest-tag", v["version"]) +- __git_version__ = v.get("full-revisionid") +- del get_versions, v ++ from .__version import version as __version__ + + + # module level doc-string +--- a/pandas/tests/api/test_api.py ++++ b/pandas/tests/api/test_api.py +@@ -193,8 +193,6 @@ class TestPDApi(Base): + "_testing", + "_typing", + ] +- if not pd._built_with_meson: +- private_modules.append("_version") + + def test_api(self): + checkthese = ( +--- a/pandas/tests/test_common.py ++++ b/pandas/tests/test_common.py +@@ -159,7 +159,7 @@ def test_standardize_mapping(): + dd = collections.defaultdict(list) + assert isinstance(com.standardize_mapping(dd), partial) + +- ++@pytest.mark.xfail(reason="deb_nonversioneer_version patch") + def test_git_version(): + # GH 21295 + git_version = pd.__git_version__ +--- a/pandas/tests/util/test_show_versions.py ++++ b/pandas/tests/util/test_show_versions.py +@@ -55,9 +55,6 @@ def test_show_versions_console(capsys): + # check header + assert "INSTALLED VERSIONS" in result + +- # check full commit hash +- assert re.search(r"commit\s*:\s[0-9a-f]{40}\n", result) +- + # check required dependency + # 2020-12-09 npdev has "dirty" in the tag + # 2022-05-25 npdev released with RC wo/ "dirty". diff --git a/patches/find_test_data.patch b/patches/find_test_data.patch new file mode 100644 index 00000000..821bcfc8 --- /dev/null +++ b/patches/find_test_data.patch @@ -0,0 +1,149 @@ +Description: Allow tests to use the data files in the source tree + +We don't ship these in the package, +but do want to run the tests that use them + +tests_path() is removed completely because it is unclear whether it +should point to the tests code or the directory above the test data + +Author: Rebecca N. Palmer +Forwarded: https://github.com/pandas-dev/pandas/issues/54907 + +--- a/pandas/conftest.py ++++ b/pandas/conftest.py +@@ -35,6 +35,7 @@ from typing import ( + TYPE_CHECKING, + Callable, + ) ++import argparse + + from dateutil.tz import ( + tzlocal, +@@ -107,6 +108,7 @@ def pytest_addoption(parser) -> None: + action="store_false", + help="Don't fail if a test is skipped for missing data file.", + ) ++ parser.addoption("--deb-data-root-dir", action="store", help=argparse.SUPPRESS) # for internal use of the Debian CI infrastructure, may change without warning. Security note: test_pickle can run arbitrary code from this directory + + + def ignore_doctest_warning(item: pytest.Item, path: str, message: str) -> None: +@@ -1169,17 +1171,15 @@ def strict_data_files(pytestconfig): + + + @pytest.fixture +-def tests_path() -> Path: +- return Path(__file__).parent / "tests" ++def tests_io_data_path(pytestconfig) -> Path: ++ BASE_PATH = pytestconfig.getoption("--deb-data-root-dir", default=None) ++ if BASE_PATH is None: ++ BASE_PATH = os.path.join(os.path.dirname(__file__), "tests") ++ return Path(BASE_PATH) / "io" / "data" + + + @pytest.fixture +-def tests_io_data_path(tests_path) -> Path: +- return tests_path / "io" / "data" +- +- +-@pytest.fixture +-def datapath(strict_data_files: str) -> Callable[..., str]: ++def datapath(strict_data_files: str, pytestconfig) -> Callable[..., str]: + """ + Get the path to a data file. + +@@ -1197,7 +1197,9 @@ def datapath(strict_data_files: str) -> + ValueError + If the path doesn't exist and the --no-strict-data-files option is not set. + """ +- BASE_PATH = os.path.join(os.path.dirname(__file__), "tests") ++ BASE_PATH = pytestconfig.getoption("--deb-data-root-dir", default=None) ++ if BASE_PATH is None: ++ BASE_PATH = os.path.join(os.path.dirname(__file__), "tests") + + def deco(*args): + path = os.path.join(BASE_PATH, *args) +--- a/pandas/tests/util/test_util.py ++++ b/pandas/tests/util/test_util.py +@@ -32,6 +32,7 @@ def test_datapath_missing(datapath): + datapath("not_a_file") + + ++@pytest.mark.xfail(reason="--deb-data-root-dir intentionally breaks this", strict=False) + def test_datapath(datapath): + args = ("io", "data", "csv", "iris.csv") + +--- a/pandas/tests/io/test_pickle.py ++++ b/pandas/tests/io/test_pickle.py +@@ -117,7 +117,7 @@ def test_pickles(datapath): + pytest.skip("known failure on non-little endian") + + # For loop for compat with --strict-data-files +- for legacy_pickle in Path(__file__).parent.glob("data/legacy_pickle/*/*.p*kl*"): ++ for legacy_pickle in Path(datapath("io", "data", "legacy_pickle")).glob("*/*.p*kl*"): + legacy_pickle = datapath(legacy_pickle) + + data = pd.read_pickle(legacy_pickle) +@@ -574,7 +574,7 @@ def test_pickle_big_dataframe_compressio + def test_pickle_frame_v124_unpickle_130(datapath): + # GH#42345 DataFrame created in 1.2.x, unpickle in 1.3.x + path = datapath( +- Path(__file__).parent, ++ "io", + "data", + "legacy_pickle", + "1.2.4", +--- a/pandas/tests/io/formats/style/test_html.py ++++ b/pandas/tests/io/formats/style/test_html.py +@@ -44,10 +44,10 @@ def tpl_table(env): + return env.get_template("html_table.tpl") + + +-def test_html_template_extends_options(): ++def test_html_template_extends_options(datapath): + # make sure if templates are edited tests are updated as are setup fixtures + # to understand the dependency +- with open("pandas/io/formats/templates/html.tpl", encoding="utf-8") as file: ++ with open(datapath("../io/formats/templates/html.tpl"), encoding="utf-8") as file: + result = file.read() + assert "{% include html_style_tpl %}" in result + assert "{% include html_table_tpl %}" in result +--- a/pandas/tests/io/xml/test_xml.py ++++ b/pandas/tests/io/xml/test_xml.py +@@ -486,13 +486,14 @@ def test_empty_string_etree(val): + read_xml(BytesIO(val), parser="etree") + + +-def test_wrong_file_path(parser): ++@pytest.mark.xfail(reason="broken by etree changes", strict=False) ++def test_wrong_file_path(parser, datapath): + msg = ( + "Passing literal xml to 'read_xml' is deprecated and " + "will be removed in a future version. To read from a " + "literal string, wrap it in a 'StringIO' object." + ) +- filename = os.path.join("data", "html", "books.xml") ++ filename = os.path.join(datapath("io", "data", "html"), "books.xml") + + with pytest.raises( + FutureWarning, +@@ -1357,17 +1358,16 @@ def test_stylesheet_with_etree(kml_cta_r + + + @pytest.mark.parametrize("val", ["", b""]) +-def test_empty_stylesheet(val): ++def test_empty_stylesheet(val, datapath): + pytest.importorskip("lxml") + msg = ( + "Passing literal xml to 'read_xml' is deprecated and " + "will be removed in a future version. To read from a " + "literal string, wrap it in a 'StringIO' object." + ) +- kml = os.path.join("data", "xml", "cta_rail_lines.kml") ++ kml = datapath("io", "data", "xml", "cta_rail_lines.kml") + +- with pytest.raises(FutureWarning, match=msg): +- read_xml(kml, stylesheet=val) ++ read_xml(kml, stylesheet=val) + + + # ITERPARSE diff --git a/patches/fix_overly_arch_specific_xfails.patch b/patches/fix_overly_arch_specific_xfails.patch new file mode 100644 index 00000000..51d6faef --- /dev/null +++ b/patches/fix_overly_arch_specific_xfails.patch @@ -0,0 +1,74 @@ +Description: Fix arch-specific upstream xfails + +We test on more architectures, so upstream's xfails are not always +correct everywhere. On those known to fail: +arm64 xfail -> all non-x86 xfail +x86 or unconditional strict xfail -> unconditional nonstrict xfail + +Author: Rebecca N. Palmer +Bug: https://github.com/pandas-dev/pandas/issues/38921, https://github.com/pandas-dev/pandas/issues/38798, https://github.com/pandas-dev/pandas/issues/41740, https://github.com/numpy/numpy/issues/19146 +Forwarded: no + +--- a/pandas/tests/io/parser/test_c_parser_only.py ++++ b/pandas/tests/io/parser/test_c_parser_only.py +@@ -17,7 +17,7 @@ import tarfile + import numpy as np + import pytest + +-from pandas.compat import is_ci_environment ++from pandas.compat import is_ci_environment, IS64 + from pandas.compat.numpy import np_version_gte1p24 + from pandas.errors import ParserError + import pandas.util._test_decorators as td +@@ -27,6 +27,9 @@ from pandas import ( + concat, + ) + import pandas._testing as tm ++import platform ++import re ++is_platform_x86 = bool(re.match("i.?86|x86",platform.uname()[4])) + + + @pytest.mark.parametrize( +@@ -654,11 +657,13 @@ def test_float_precision_options(c_parse + + tm.assert_frame_equal(df, df2) + +- df3 = parser.read_csv(StringIO(s), float_precision="legacy") +- +- assert not df.iloc[0, 0] == df3.iloc[0, 0] +- + msg = "Unrecognized float_precision option: junk" + + with pytest.raises(ValueError, match=msg): + parser.read_csv(StringIO(s), float_precision="junk") ++ ++ df3 = parser.read_csv(StringIO(s), float_precision="legacy") ++ if is_platform_x86 and (not IS64) and (df.iloc[0, 0] == df3.iloc[0, 0]): ++ pytest.xfail(reason="maybe x87 extra precision") ++ ++ assert not df.iloc[0, 0] == df3.iloc[0, 0] +--- a/pandas/tests/window/test_rolling.py ++++ b/pandas/tests/window/test_rolling.py +@@ -10,7 +10,11 @@ from pandas.compat import ( + IS64, + is_platform_arm, + is_platform_power, ++ IS64, + ) ++import platform ++import re ++is_platform_x86 = bool(re.match("i.?86|x86", platform.uname()[4])) + + from pandas import ( + DataFrame, +@@ -1101,7 +1105,8 @@ def test_rolling_sem(frame_or_series): + + + @pytest.mark.xfail( +- is_platform_arm() or is_platform_power(), ++ not (is_platform_x86 and IS64), ++ strict=False, + reason="GH 38921", + ) + @pytest.mark.parametrize( diff --git a/patches/fix_random_seeds.patch b/patches/fix_random_seeds.patch new file mode 100644 index 00000000..d2bacb34 --- /dev/null +++ b/patches/fix_random_seeds.patch @@ -0,0 +1,175 @@ +Description: Use fixed seeds for reproducible pseudorandomness + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/doc/source/getting_started/comparison/comparison_with_r.rst ++++ b/doc/source/getting_started/comparison/comparison_with_r.rst +@@ -237,6 +237,7 @@ In pandas we may use :meth:`~pandas.pivo + + import random + import string ++ random.seed(123456) # for reproducibility + + baseball = pd.DataFrame( + { +--- a/doc/source/user_guide/advanced.rst ++++ b/doc/source/user_guide/advanced.rst +@@ -590,6 +590,7 @@ they need to be sorted. As with any inde + + import random + ++ random.seed(123456) # for reproducibility + random.shuffle(tuples) + s = pd.Series(np.random.randn(8), index=pd.MultiIndex.from_tuples(tuples)) + s +--- a/doc/source/user_guide/visualization.rst ++++ b/doc/source/user_guide/visualization.rst +@@ -1086,6 +1086,7 @@ are what constitutes the bootstrap plot. + :suppress: + + np.random.seed(123456) ++ random.seed(123456) # for reproducibility - bootstrap_plot uses random.sample + + .. ipython:: python + +--- a/pandas/plotting/_core.py ++++ b/pandas/plotting/_core.py +@@ -600,6 +600,7 @@ def boxplot_frame_groupby( + .. plot:: + :context: close-figs + ++ >>> np.random.seed(1234) + >>> import itertools + >>> tuples = [t for t in itertools.product(range(1000), range(4))] + >>> index = pd.MultiIndex.from_tuples(tuples, names=['lvl0', 'lvl1']) +@@ -1329,6 +1330,7 @@ class PlotAccessor(PandasObject): + .. plot:: + :context: close-figs + ++ >>> np.random.seed(1234) + >>> data = np.random.randn(25, 4) + >>> df = pd.DataFrame(data, columns=list('ABCD')) + >>> ax = df.plot.box() +@@ -1393,6 +1395,7 @@ class PlotAccessor(PandasObject): + .. plot:: + :context: close-figs + ++ >>> np.random.seed(1234) + >>> df = pd.DataFrame( + ... np.random.randint(1, 7, 6000), + ... columns = ['one']) +@@ -1814,6 +1817,7 @@ class PlotAccessor(PandasObject): + .. plot:: + :context: close-figs + ++ >>> np.random.seed(1234) + >>> n = 10000 + >>> df = pd.DataFrame({'x': np.random.randn(n), + ... 'y': np.random.randn(n)}) +--- a/pandas/plotting/_misc.py ++++ b/pandas/plotting/_misc.py +@@ -438,6 +438,8 @@ def bootstrap_plot( + .. plot:: + :context: close-figs + ++ >>> np.random.seed(1234) ++ >>> random.seed(1234) # for reproducibility + >>> s = pd.Series(np.random.uniform(size=100)) + >>> pd.plotting.bootstrap_plot(s) +
+@@ -597,6 +599,7 @@ def autocorrelation_plot(series: Series, + .. plot:: + :context: close-figs + ++ >>> np.random.seed(1234) + >>> spacing = np.linspace(-9 * np.pi, 9 * np.pi, num=1000) + >>> s = pd.Series(0.7 * np.random.rand(1000) + 0.3 * np.sin(spacing)) + >>> pd.plotting.autocorrelation_plot(s) # doctest: +SKIP +--- a/doc/source/user_guide/style.ipynb ++++ b/doc/source/user_guide/style.ipynb +@@ -78,8 +78,37 @@ + "source": [ + "import pandas as pd\n", + "import numpy as np\n", +- "import matplotlib as mpl\n", +- "\n", ++ "import matplotlib as mpl\n" ++ ] ++ }, ++ { ++ "cell_type": "code", ++ "execution_count": null, ++ "metadata": { ++ "nbsphinx": "hidden" ++ }, ++ "outputs": [], ++ "source": [ ++ "# For reproducibility - this doesn't respect uuid_len or positionally-passed uuid but the places here that use that coincidentally bypass this anyway\n", ++ "from pandas.io.formats.style import Styler\n", ++ "next_uuid = 1000\n", ++ "class StylerReproducible(Styler):\n", ++ " def __init__(self, *args, uuid=None, **kwargs):\n", ++ " global next_uuid\n", ++ " if uuid is None:\n", ++ " uuid = str(next_uuid)\n", ++ " next_uuid = next_uuid + 1\n", ++ " super().__init__(*args, uuid=uuid, **kwargs)\n", ++ "Styler = StylerReproducible\n", ++ "pd.DataFrame.style = property(lambda self: StylerReproducible(self))\n" ++ ] ++ }, ++ { ++ "cell_type": "code", ++ "execution_count": null, ++ "metadata": {}, ++ "outputs": [], ++ "source": [ + "df = pd.DataFrame({\n", + " \"strings\": [\"Adam\", \"Mike\"],\n", + " \"ints\": [1, 3],\n", +@@ -104,6 +133,7 @@ + "metadata": {}, + "outputs": [], + "source": [ ++ "np.random.seed(25) # for reproducibility\n", + "weather_df = pd.DataFrame(np.random.rand(10,2)*5, \n", + " index=pd.date_range(start=\"2021-01-01\", periods=10),\n", + " columns=[\"Tokyo\", \"Beijing\"])\n", +@@ -1394,7 +1424,6 @@ + "outputs": [], + "source": [ + "# Hide the construction of the display chart from the user\n", +- "import pandas as pd\n", + "from IPython.display import HTML\n", + "\n", + "# Test series\n", +@@ -1926,6 +1955,18 @@ + ] + }, + { ++ "cell_type": "code", ++ "execution_count": null, ++ "metadata": { ++ "nbsphinx": "hidden" ++ }, ++ "outputs": [], ++ "source": [ ++ "# For reproducibility\n", ++ "Styler = StylerReproducible\n" ++ ] ++ }, ++ { + "cell_type": "markdown", + "metadata": {}, + "source": [ +@@ -2126,7 +2167,8 @@ + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.9.5" +- } ++ }, ++ "record_timing": false + }, + "nbformat": 4, + "nbformat_minor": 1 diff --git a/patches/hurd_compat.patch b/patches/hurd_compat.patch new file mode 100644 index 00000000..7b734a13 --- /dev/null +++ b/patches/hurd_compat.patch @@ -0,0 +1,125 @@ +Description: Avoid test failures on Hurd + +Allow multiprocessing to be unavailable +Accept any errno not just 2 for (intentionally) nonexistent files +(Hurd appears to use 2**30+2) + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/io/parser/common/test_file_buffer_url.py ++++ b/pandas/tests/io/parser/common/test_file_buffer_url.py +@@ -83,7 +83,7 @@ def test_nonexistent_path(all_parsers): + parser = all_parsers + path = f"{uuid.uuid4()}.csv" + +- msg = r"\[Errno 2\]" ++ msg = r"\[Errno 2\]|\[Errno [0-9]+\] No such file or directory" + with pytest.raises(FileNotFoundError, match=msg) as e: + parser.read_csv(path) + assert path == e.value.filename +@@ -94,7 +94,7 @@ def test_no_permission(all_parsers): + # GH 23784 + parser = all_parsers + +- msg = r"\[Errno 13\]" ++ msg = r"\[Errno 13\]|\[Errno [0-9]+\] Permission denied" + with tm.ensure_clean() as path: + os.chmod(path, 0) # make file unreadable + +--- a/pandas/tests/io/parser/common/test_float.py ++++ b/pandas/tests/io/parser/common/test_float.py +@@ -53,7 +53,7 @@ def test_too_many_exponent_digits(all_pa + data = f"data\n10E{exp}" + result = parser.read_csv(StringIO(data), float_precision=precision) + if precision == "round_trip": +- if exp == 999999999999999999 and is_platform_linux(): ++ if exp == 999999999999999999: + mark = pytest.mark.xfail(reason="GH38794, on Linux gives object result") + request.node.add_marker(mark) + +--- a/pandas/tests/io/parser/test_multi_thread.py ++++ b/pandas/tests/io/parser/test_multi_thread.py +@@ -4,7 +4,13 @@ parsing files for each parser defined in + """ + from contextlib import ExitStack + from io import BytesIO +-from multiprocessing.pool import ThreadPool ++import pytest ++try: ++ from multiprocessing.pool import ThreadPool ++ with ThreadPool(): ++ pass ++except ImportError: ++ pytest.skip("multiprocessing not available",allow_module_level=True) + + import numpy as np + import pytest +--- a/pandas/tests/test_downstream.py ++++ b/pandas/tests/test_downstream.py +@@ -33,6 +33,12 @@ def df(): + + + def test_dask(df): ++ try: ++ from multiprocessing.pool import ThreadPool ++ with ThreadPool(): ++ pass ++ except ImportError: ++ pytest.skip("multiprocessing not available") + # dask sets "compute.use_numexpr" to False, so catch the current value + # and ensure to reset it afterwards to avoid impacting other tests + olduse = pd.get_option("compute.use_numexpr") +--- a/pandas/tests/io/test_common.py ++++ b/pandas/tests/io/test_common.py +@@ -195,16 +195,16 @@ Look,a snake,🐍""" + + path = os.path.join(HERE, "data", "does_not_exist." + fn_ext) + msg1 = rf"File (b')?.+does_not_exist\.{fn_ext}'? does not exist" +- msg2 = rf"\[Errno 2\] No such file or directory: '.+does_not_exist\.{fn_ext}'" ++ msg2 = rf"\[Errno [0-9]+\] No such file or directory: '.+does_not_exist\.{fn_ext}'" + msg3 = "Expected object or value" + msg4 = "path_or_buf needs to be a string file path or file-like" + msg5 = ( +- rf"\[Errno 2\] File .+does_not_exist\.{fn_ext} does not exist: " ++ rf"\[Errno [0-9]+\] File .+does_not_exist\.{fn_ext} does not exist: " + rf"'.+does_not_exist\.{fn_ext}'" + ) +- msg6 = rf"\[Errno 2\] 没有那个文件或目录: '.+does_not_exist\.{fn_ext}'" ++ msg6 = rf"\[Errno [0-9]+\] 没有那个文件或目录: '.+does_not_exist\.{fn_ext}'" + msg7 = ( +- rf"\[Errno 2\] File o directory non esistente: '.+does_not_exist\.{fn_ext}'" ++ rf"\[Errno [0-9]+\] File o directory non esistente: '.+does_not_exist\.{fn_ext}'" + ) + msg8 = rf"Failed to open local file.+does_not_exist\.{fn_ext}" + +@@ -265,16 +265,16 @@ Look,a snake,🐍""" + monkeypatch.setattr(icom, "_expand_user", lambda x: os.path.join("foo", x)) + + msg1 = rf"File (b')?.+does_not_exist\.{fn_ext}'? does not exist" +- msg2 = rf"\[Errno 2\] No such file or directory: '.+does_not_exist\.{fn_ext}'" ++ msg2 = rf"\[Errno [0-9]+\] No such file or directory: '.+does_not_exist\.{fn_ext}'" + msg3 = "Unexpected character found when decoding 'false'" + msg4 = "path_or_buf needs to be a string file path or file-like" + msg5 = ( +- rf"\[Errno 2\] File .+does_not_exist\.{fn_ext} does not exist: " ++ rf"\[Errno [0-9]+\] File .+does_not_exist\.{fn_ext} does not exist: " + rf"'.+does_not_exist\.{fn_ext}'" + ) +- msg6 = rf"\[Errno 2\] 没有那个文件或目录: '.+does_not_exist\.{fn_ext}'" ++ msg6 = rf"\[Errno [0-9]+\] 没有那个文件或目录: '.+does_not_exist\.{fn_ext}'" + msg7 = ( +- rf"\[Errno 2\] File o directory non esistente: '.+does_not_exist\.{fn_ext}'" ++ rf"\[Errno [0-9]+\] File o directory non esistente: '.+does_not_exist\.{fn_ext}'" + ) + msg8 = rf"Failed to open local file.+does_not_exist\.{fn_ext}" + +@@ -578,7 +578,7 @@ def test_bad_encdoing_errors(): + + def test_errno_attribute(): + # GH 13872 +- with pytest.raises(FileNotFoundError, match="\\[Errno 2\\]") as err: ++ with pytest.raises(FileNotFoundError, match="\\[Errno [0-9]+\\]") as err: + pd.read_csv("doesnt_exist") + assert err.errno == errno.ENOENT + diff --git a/patches/ignore_ipython_exceptions.patch b/patches/ignore_ipython_exceptions.patch new file mode 100644 index 00000000..a6cda054 --- /dev/null +++ b/patches/ignore_ipython_exceptions.patch @@ -0,0 +1,18 @@ +Description: Ignore exceptions in documentation examples + +Some examples download data, and/or depend on +packages Debian doesn't have, so can't run in a Debian build + +Author: Rebecca N. Palmer +Forwarded: not-needed + +--- a/doc/source/conf.py ++++ b/doc/source/conf.py +@@ -460,6 +460,7 @@ extlinks = { + } + + ++ipython_warning_is_error = False + ipython_execlines = [ + "import numpy as np", + "import pandas as pd", diff --git a/patches/ignore_python3p12_deprecations.patch b/patches/ignore_python3p12_deprecations.patch new file mode 100644 index 00000000..e102f21d --- /dev/null +++ b/patches/ignore_python3p12_deprecations.patch @@ -0,0 +1,32 @@ +Description: Ignore DeprecationWarnings from Python 3.12 + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pyproject.toml ++++ b/pyproject.toml +@@ -506,6 +506,8 @@ filterwarnings = [ + "ignore:distutils Version classes are deprecated:DeprecationWarning:fsspec", + # Can be removed once https://github.com/numpy/numpy/pull/24794 is merged + "ignore:.*In the future `np.long` will be defined as.*:FutureWarning", ++ "ignore:Pickle, copy, and deepcopy support will be removed from itertools.*:DeprecationWarning", ++ "ignore:Bitwise inversion.*on bool.*:DeprecationWarning", + ] + junit_family = "xunit2" + markers = [ +--- a/pandas/tests/computation/test_eval.py ++++ b/pandas/tests/computation/test_eval.py +@@ -554,11 +554,11 @@ class TestEval: + assert pd.eval("-1", parser=parser, engine=engine) == -1 + assert pd.eval("+1", parser=parser, engine=engine) == +1 + with tm.assert_produces_warning( +- warn, match="Bitwise inversion", check_stacklevel=False ++ warn, match="Bitwise inversion", check_stacklevel=False, raise_on_extra_warnings=False + ): + assert pd.eval("~True", parser=parser, engine=engine) == ~True + with tm.assert_produces_warning( +- warn, match="Bitwise inversion", check_stacklevel=False ++ warn, match="Bitwise inversion", check_stacklevel=False, raise_on_extra_warnings=False + ): + assert pd.eval("~False", parser=parser, engine=engine) == ~False + assert pd.eval("-True", parser=parser, engine=engine) == -True diff --git a/patches/mathjax-path.patch b/patches/mathjax-path.patch new file mode 100644 index 00000000..f8a596cf --- /dev/null +++ b/patches/mathjax-path.patch @@ -0,0 +1,16 @@ +Description: Use Debian packaged mathjax + +Author: Andreas Tille +Forwarded: not-needed + +--- a/doc/source/conf.py ++++ b/doc/source/conf.py +@@ -71,6 +71,8 @@ extensions = [ + "nbsphinx", + ] + ++mathjax_path="MathJax.js" ++ + exclude_patterns = [ + "**.ipynb_checkpoints", + # to ensure that include files (partial pages) aren't built, exclude them diff --git a/patches/mips_pow_nan.patch b/patches/mips_pow_nan.patch new file mode 100644 index 00000000..86599cec --- /dev/null +++ b/patches/mips_pow_nan.patch @@ -0,0 +1,85 @@ +Description: On mips, 1**np.nan and np.nan**0 may be NaN not 1 + +Done this way not a plain xfail to allow only this difference, +not clearly wrong answers + +(The same hardware's "invalid value encountered" warnings, +probably from sNaN/qNaN being reversed, are ignored elsewhere: +d/rules and xfail_tests_nonintel_io.patch) + +https://en.wikipedia.org/wiki/NaN#Encoding + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/arrays/floating/test_arithmetic.py ++++ b/pandas/tests/arrays/floating/test_arithmetic.py +@@ -1,4 +1,5 @@ + import operator ++import platform + + import numpy as np + import pytest +@@ -69,6 +70,11 @@ def test_pow_scalar(dtype): + np.array([np.nan, np.nan, 1, np.nan, np.nan], dtype=dtype.numpy_dtype), + mask=a._mask, + ) ++ if 'mips' in platform.uname()[4] and np.isnan(result[2]): ++ expected = FloatingArray( ++ np.array([np.nan, np.nan, np.nan, np.nan, np.nan], dtype=dtype.numpy_dtype), ++ mask=a._mask, ++ ) + tm.assert_extension_array_equal(result, expected) + + # reversed +@@ -80,6 +86,12 @@ def test_pow_scalar(dtype): + + result = 1**a + expected = pd.array([1, 1, 1, 1], dtype=dtype) ++ if 'mips' in platform.uname()[4] and np.isnan(result[2]): ++ expected = FloatingArray( ++ np.array([1, 1, np.nan, 1], dtype=dtype.numpy_dtype), ++ mask=expected._mask, ++ ) ++ + tm.assert_extension_array_equal(result, expected) + + result = pd.NA**a +@@ -90,6 +102,11 @@ def test_pow_scalar(dtype): + expected = FloatingArray( + np.array([1, np.nan, np.nan, np.nan], dtype=dtype.numpy_dtype), mask=a._mask + ) ++ if 'mips' in platform.uname()[4] and np.isnan(result[0]): ++ expected = FloatingArray( ++ np.array([np.nan, np.nan, np.nan, np.nan], dtype=dtype.numpy_dtype), ++ mask=a._mask, ++ ) + tm.assert_extension_array_equal(result, expected) + + +@@ -98,6 +115,8 @@ def test_pow_array(dtype): + b = pd.array([0, 1, None, 0, 1, None, 0, 1, None], dtype=dtype) + result = a**b + expected = pd.array([1, 0, None, 1, 1, 1, 1, None, None], dtype=dtype) ++ if 'mips' in platform.uname()[4] and np.isnan(result[5]): ++ expected = FloatingArray(np.array([1, 0, np.nan, 1, 1, np.nan, np.nan, np.nan, np.nan], dtype=dtype.numpy_dtype), mask=expected._mask) + tm.assert_extension_array_equal(result, expected) + + +--- a/pandas/tests/arrays/sparse/test_arithmetics.py ++++ b/pandas/tests/arrays/sparse/test_arithmetics.py +@@ -1,4 +1,5 @@ + import operator ++import platform + + import numpy as np + import pytest +@@ -44,6 +45,8 @@ class TestSparseArrayArithmetics: + result = op(a, b_dense).to_dense() + else: + result = op(a, b).to_dense() ++ if 'mips' in platform.uname()[4] and op==operator.pow and a[1]==1 and np.isnan(b if np.isscalar(b) else b[1]) and np.isnan(expected[1]) and result[1]==1: ++ expected[1]=1 + + self._assert(result, expected) + diff --git a/patches/no_sphinx_toggleprompt.patch b/patches/no_sphinx_toggleprompt.patch new file mode 100644 index 00000000..405c6bce --- /dev/null +++ b/patches/no_sphinx_toggleprompt.patch @@ -0,0 +1,15 @@ +Description: Don't try to use a Sphinx extension we don't have + +Author: Rebecca N. Palmer +Forwarded: not-needed + +--- a/doc/source/conf.py ++++ b/doc/source/conf.py +@@ -57,7 +57,6 @@ extensions = [ + "numpydoc", + "sphinx_copybutton", + "sphinx_design", +- "sphinx_toggleprompt", + "sphinx.ext.autodoc", + "sphinx.ext.autosummary", + "sphinx.ext.coverage", diff --git a/patches/numba_fail_32bit.patch b/patches/numba_fail_32bit.patch new file mode 100644 index 00000000..9277890e --- /dev/null +++ b/patches/numba_fail_32bit.patch @@ -0,0 +1,168 @@ +Description: Allow some numba errors on 32-bit + +Specifying the exception type allows only explicit errors, +not silently wrong answers + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/groupby/conftest.py ++++ b/pandas/tests/groupby/conftest.py +@@ -7,6 +7,11 @@ from pandas.core.groupby.base import ( + reduction_kernels, + transformation_kernels, + ) ++from pandas.compat import IS64 ++try: ++ from numba.core.errors import UnsupportedParforsError ++except ImportError: # numba not installed ++ UnsupportedParforsError = ImportError + + + @pytest.fixture(params=[True, False]) +@@ -169,7 +174,22 @@ def groupby_func(request): + return request.param + + +-@pytest.fixture(params=[True, False]) ++# the xfail is because numba does not support this on 32-bit systems ++# https://github.com/numba/numba/blob/main/numba/parfors/parfors.py ++# strict=False because some tests are of error paths that ++# fail of something else before reaching this point ++@pytest.fixture(params=[ ++ pytest.param( ++ True, ++ marks=pytest.mark.xfail( ++ condition=not IS64, ++ reason="parfors not available on 32-bit", ++ raises=UnsupportedParforsError, ++ strict=False, ++ ) ++ ), ++ False, ++ ]) + def parallel(request): + """parallel keyword argument for numba.jit""" + return request.param +--- a/pandas/tests/window/conftest.py ++++ b/pandas/tests/window/conftest.py +@@ -13,6 +13,12 @@ from pandas import ( + Series, + bdate_range, + ) ++from pandas.compat import IS64 ++try: ++ from numba.core.errors import UnsupportedParforsError, TypingError ++except ImportError: # numba not installed ++ UnsupportedParforsError = ImportError ++ TypingError = ImportError + + + @pytest.fixture(params=[True, False]) +@@ -50,7 +56,22 @@ def min_periods(request): + return request.param + + +-@pytest.fixture(params=[True, False]) ++# the xfail is because numba does not support this on 32-bit systems ++# https://github.com/numba/numba/blob/main/numba/parfors/parfors.py ++# strict=False because some tests are of error paths that ++# fail of something else before reaching this point ++@pytest.fixture(params=[ ++ pytest.param( ++ True, ++ marks=pytest.mark.xfail( ++ condition=not IS64, ++ reason="parfors not available on 32-bit", ++ raises=(UnsupportedParforsError, TypingError), ++ strict=False, ++ ) ++ ), ++ False, ++ ]) + def parallel(request): + """parallel keyword argument for numba.jit""" + return request.param +--- a/pandas/tests/window/test_numba.py ++++ b/pandas/tests/window/test_numba.py +@@ -5,7 +5,13 @@ from pandas.compat import ( + is_ci_environment, + is_platform_mac, + is_platform_windows, ++ IS64, + ) ++try: ++ from numba.core.errors import UnsupportedParforsError, TypingError ++except ImportError: # numba not installed ++ UnsupportedParforsError = ImportError ++ TypingError = ImportError + from pandas.errors import NumbaUtilError + import pandas.util._test_decorators as td + +@@ -199,6 +205,12 @@ class TestEngine: + expected = DataFrame({"value": [2.0, 2.0, 2.0]}) + tm.assert_frame_equal(result, expected) + ++ @pytest.mark.xfail( ++ condition=not IS64, ++ reason="parfors not available on 32-bit", ++ raises=UnsupportedParforsError, ++ strict=False, ++ ) + def test_dont_cache_engine_kwargs(self): + # If the user passes a different set of engine_kwargs don't return the same + # jitted function +@@ -339,6 +351,12 @@ class TestTableMethod: + f, engine="numba", raw=True + ) + ++ @pytest.mark.xfail( ++ condition=not IS64, ++ reason="parfors not available on 32-bit", ++ raises=(UnsupportedParforsError, TypingError), ++ strict=False, ++ ) + def test_table_method_rolling_methods( + self, + axis, +@@ -421,6 +439,12 @@ class TestTableMethod: + ) + tm.assert_frame_equal(result, expected) + ++ @pytest.mark.xfail( ++ condition=not IS64, ++ reason="parfors not available on 32-bit", ++ raises=(UnsupportedParforsError, TypingError), ++ strict=False, ++ ) + def test_table_method_expanding_methods( + self, axis, nogil, parallel, nopython, arithmetic_numba_supported_operators + ): +--- a/pandas/tests/groupby/aggregate/test_numba.py ++++ b/pandas/tests/groupby/aggregate/test_numba.py +@@ -11,6 +11,12 @@ from pandas import ( + option_context, + ) + import pandas._testing as tm ++from pandas.compat import IS64 ++try: ++ from numba.core.errors import UnsupportedParforsError, TypingError ++except ImportError: # numba not installed ++ UnsupportedParforsError = ImportError ++ TypingError = ImportError + + pytestmark = pytest.mark.single_cpu + +@@ -252,6 +258,12 @@ def test_multifunc_numba_vs_cython_serie + ), + ], + ) ++@pytest.mark.xfail( ++ condition=not IS64, ++ reason="parfors not available on 32-bit", ++ raises=UnsupportedParforsError, ++ strict=False, ++) + def test_multifunc_numba_kwarg_propagation(data, agg_kwargs): + pytest.importorskip("numba") + labels = ["a", "a", "b", "b", "a"] diff --git a/patches/numba_warn_nonx86.patch b/patches/numba_warn_nonx86.patch new file mode 100644 index 00000000..612f9a93 --- /dev/null +++ b/patches/numba_warn_nonx86.patch @@ -0,0 +1,30 @@ +Description: Warn that numba may not work on non-x86 + +Currently known issues are crashes, not wrong answers, but because +the test setup doesn't allow ignoring crashes but failing on +wrong answers, it would be easy to not notice if this changed + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/compat/_optional.py ++++ b/pandas/compat/_optional.py +@@ -4,6 +4,9 @@ import importlib + import sys + from typing import TYPE_CHECKING + import warnings ++import platform ++import re ++warn_numba_platform = "Non-x86 system detected, Numba may give wrong results or crash" if not bool(re.match('i.?86|x86',platform.uname()[4])) else False + + from pandas.util._exceptions import find_stack_level + +@@ -120,6 +123,8 @@ def import_optional_dependency( + """ + + assert errors in {"warn", "raise", "ignore"} ++ if name=='numba' and warn_numba_platform: ++ warnings.warn(warn_numba_platform) + + package_name = INSTALL_MAPPING.get(name) + install_name = package_name if package_name is not None else name diff --git a/patches/privacy.patch b/patches/privacy.patch new file mode 100644 index 00000000..93b50397 --- /dev/null +++ b/patches/privacy.patch @@ -0,0 +1,23 @@ +Description: Link to rather than embed Google calendar + +Author: Rebecca N. Palmer +Forwarded: not-needed + +--- a/doc/source/development/community.rst ++++ b/doc/source/development/community.rst +@@ -48,14 +48,10 @@ The agenda for the next meeting and minu + Calendar + -------- + +-This calendar shows all the community meetings. Our community meetings are ++`This calendar `__ shows all the community meetings. Our community meetings are + ideal for anyone wanting to contribute to pandas, or just curious to know how + current development is going. + +-.. raw:: html +- +- +- + You can subscribe to this calendar with the following links: + + * `iCal `__ diff --git a/patches/pytables_python3p12.patch b/patches/pytables_python3p12.patch new file mode 100644 index 00000000..41049917 --- /dev/null +++ b/patches/pytables_python3p12.patch @@ -0,0 +1,54 @@ +Description: Ignore pytables test failures with Python 3.12 + +The combined xfails are because two separate xfails where only one +has run=False may run, which is a problem when the run=False exists +to avoid a crash - see 1.5.3+dfsg-8 armhf build log + +Bug-Debian: https://bugs.debian.org/1055801 +Bug-Ubuntu: https://launchpad.net/ubuntu/+bug/2043895 +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/io/pytables/test_append.py ++++ b/pandas/tests/io/pytables/test_append.py +@@ -279,7 +279,8 @@ def test_append_all_nans(setup_path): + tm.assert_frame_equal(store["df2"], df, check_index_type=True) + + +-@pytest.mark.xfail(condition=is_crashing_arch,reason="https://bugs.debian.org/790925",strict=False,run=False) ++from pandas.compat import PY312 ++@pytest.mark.xfail(condition=PY312 or is_crashing_arch, reason="https://bugs.debian.org/1055801 and https://bugs.debian.org/790925",raises=ValueError,strict=False, run=not is_crashing_arch) + def test_append_frame_column_oriented(setup_path): + with ensure_clean_store(setup_path) as store: + # column oriented +--- a/pandas/tests/io/pytables/test_select.py ++++ b/pandas/tests/io/pytables/test_select.py +@@ -164,6 +164,8 @@ def test_select(setup_path): + tm.assert_frame_equal(expected, result) + + ++from pandas.compat import PY312 ++@pytest.mark.xfail(condition=PY312, reason="python3.12 https://bugs.debian.org/1055801",raises=ValueError,strict=False) + def test_select_dtypes(setup_path): + with ensure_clean_store(setup_path) as store: + # with a Timestamp data column (GH #2637) +@@ -563,6 +565,7 @@ def test_select_iterator_many_empty_fram + assert len(results) == 0 + + ++@pytest.mark.xfail(condition=PY312, reason="python3.12 https://bugs.debian.org/1055801",raises=TypeError,strict=False) + def test_frame_select(setup_path): + df = tm.makeTimeDataFrame() + +--- a/pandas/tests/io/pytables/test_store.py ++++ b/pandas/tests/io/pytables/test_store.py +@@ -763,7 +763,8 @@ def test_start_stop_fixed(setup_path): + df.iloc[8:10, -2] = np.nan + + +-@pytest.mark.xfail(condition=is_crashing_arch,reason="https://bugs.debian.org/790925",strict=False,run=False) ++from pandas.compat import PY312 ++@pytest.mark.xfail(condition=PY312 or is_crashing_arch, reason="https://bugs.debian.org/1055801 and https://bugs.debian.org/790925",raises=ValueError,strict=False, run=not is_crashing_arch) + def test_select_filter_corner(setup_path): + df = DataFrame(np.random.default_rng(2).standard_normal((50, 100))) + df.index = [f"{c:3d}" for c in df.index] diff --git a/patches/remove_ccbysa_snippets.patch b/patches/remove_ccbysa_snippets.patch new file mode 100644 index 00000000..57e69cfc --- /dev/null +++ b/patches/remove_ccbysa_snippets.patch @@ -0,0 +1,221 @@ +Description: Remove code from Stack Overflow + +Stack Overflow content is CC-BY-SA licensed, +which this package is not supposed to be. These snippets may be +too small to be copyrightable, but removing them to be safe. + +https://lists.debian.org/debian-legal/2020/04/threads.html#00018 + +Author: Rebecca N. Palmer +Forwarded: no - deletes some tests/examples without replacement + +--- /dev/null ++++ b/doc/source/user_guide/cookbook.rst +@@ -0,0 +1,22 @@ ++.. _cookbook: ++ ++{{ header }} ++ ++.. _cookbook.idioms: ++.. _cookbook.selection: ++.. _cookbook.multi_index: ++.. _cookbook.missing_data: ++.. _cookbook.grouping: ++.. _cookbook.pivot: ++.. _cookbook.resample: ++.. _cookbook.merge: ++.. _cookbook.plotting: ++.. _cookbook.csv: ++.. _cookbook.csv.multiple_files: ++.. _cookbook.sql: ++.. _cookbook.excel: ++.. _cookbook.html: ++.. _cookbook.hdf: ++.. _cookbook.binary: ++ ++This page has been removed for copyright reasons. +--- a/doc/source/user_guide/index.rst ++++ b/doc/source/user_guide/index.rst +@@ -87,4 +87,3 @@ Guides + scale + sparse + gotchas +- cookbook +--- a/pandas/io/sql.py ++++ b/pandas/io/sql.py +@@ -2053,14 +2053,14 @@ def _get_valid_sqlite_name(name: object) + # Replace all " with "". + # Wrap the entire thing in double quotes. + +- uname = _get_unicode_name(name) +- if not len(uname): ++ name = _get_unicode_name(name) ++ if not len(name): + raise ValueError("Empty table or column name specified") + +- nul_index = uname.find("\x00") +- if nul_index >= 0: ++ if '\0' in name: + raise ValueError("SQLite identifier cannot contain NULs") +- return '"' + uname.replace('"', '""') + '"' ++ name = name.replace('"', '""') ++ return '"' + name + '"' + + + class SQLiteTable(SQLTable): +--- a/pandas/tests/groupby/test_categorical.py ++++ b/pandas/tests/groupby/test_categorical.py +@@ -980,28 +980,6 @@ def test_groupby_empty_with_category(): + tm.assert_series_equal(result, expected) + + +-def test_sort(): +- # https://stackoverflow.com/questions/23814368/sorting-pandas- +- # categorical-labels-after-groupby +- # This should result in a properly sorted Series so that the plot +- # has a sorted x axis +- # self.cat.groupby(['value_group'])['value_group'].count().plot(kind='bar') +- +- df = DataFrame({"value": np.random.default_rng(2).integers(0, 10000, 100)}) +- labels = [f"{i} - {i+499}" for i in range(0, 10000, 500)] +- cat_labels = Categorical(labels, labels) +- +- df = df.sort_values(by=["value"], ascending=True) +- df["value_group"] = pd.cut( +- df.value, range(0, 10500, 500), right=False, labels=cat_labels +- ) +- +- res = df.groupby(["value_group"], observed=False)["value_group"].count() +- exp = res[sorted(res.index, key=lambda x: float(x.split()[0]))] +- exp.index = CategoricalIndex(exp.index, name=exp.index.name) +- tm.assert_series_equal(res, exp) +- +- + @pytest.mark.parametrize("ordered", [True, False]) + def test_sort2(sort, ordered): + # dataframe groupby sort was being ignored # GH 8868 +--- a/pandas/tests/indexing/multiindex/test_setitem.py ++++ b/pandas/tests/indexing/multiindex/test_setitem.py +@@ -155,36 +155,6 @@ class TestMultiIndexSetItem: + with pytest.raises(TypeError, match=msg): + df.loc["bar"] *= 2 + +- def test_multiindex_setitem2(self): +- # from SO +- # https://stackoverflow.com/questions/24572040/pandas-access-the-level-of-multiindex-for-inplace-operation +- df_orig = DataFrame.from_dict( +- { +- "price": { +- ("DE", "Coal", "Stock"): 2, +- ("DE", "Gas", "Stock"): 4, +- ("DE", "Elec", "Demand"): 1, +- ("FR", "Gas", "Stock"): 5, +- ("FR", "Solar", "SupIm"): 0, +- ("FR", "Wind", "SupIm"): 0, +- } +- } +- ) +- df_orig.index = MultiIndex.from_tuples( +- df_orig.index, names=["Sit", "Com", "Type"] +- ) +- +- expected = df_orig.copy() +- expected.iloc[[0, 2, 3]] *= 2 +- +- idx = pd.IndexSlice +- df = df_orig.copy() +- df.loc[idx[:, :, "Stock"], :] *= 2 +- tm.assert_frame_equal(df, expected) +- +- df = df_orig.copy() +- df.loc[idx[:, :, "Stock"], "price"] *= 2 +- tm.assert_frame_equal(df, expected) + + def test_multiindex_assignment(self): + # GH3777 part 2 +--- a/pandas/tests/io/parser/common/test_common_basic.py ++++ b/pandas/tests/io/parser/common/test_common_basic.py +@@ -349,24 +349,6 @@ def test_trailing_delimiters(all_parsers + tm.assert_frame_equal(result, expected) + + +-def test_escapechar(all_parsers): +- # https://stackoverflow.com/questions/13824840/feature-request-for- +- # pandas-read-csv +- data = '''SEARCH_TERM,ACTUAL_URL +-"bra tv board","http://www.ikea.com/se/sv/catalog/categories/departments/living_room/10475/?se%7cps%7cnonbranded%7cvardagsrum%7cgoogle%7ctv_bord" +-"tv p\xc3\xa5 hjul","http://www.ikea.com/se/sv/catalog/categories/departments/living_room/10475/?se%7cps%7cnonbranded%7cvardagsrum%7cgoogle%7ctv_bord" +-"SLAGBORD, \\"Bergslagen\\", IKEA:s 1700-tals series","http://www.ikea.com/se/sv/catalog/categories/departments/living_room/10475/?se%7cps%7cnonbranded%7cvardagsrum%7cgoogle%7ctv_bord"''' # noqa: E501 +- +- parser = all_parsers +- result = parser.read_csv( +- StringIO(data), escapechar="\\", quotechar='"', encoding="utf-8" +- ) +- +- assert result["SEARCH_TERM"][2] == 'SLAGBORD, "Bergslagen", IKEA:s 1700-tals series' +- +- tm.assert_index_equal(result.columns, Index(["SEARCH_TERM", "ACTUAL_URL"])) +- +- + @xfail_pyarrow + def test_ignore_leading_whitespace(all_parsers): + # see gh-3374, gh-6607 +--- a/pandas/tests/indexing/multiindex/test_chaining_and_caching.py ++++ b/pandas/tests/indexing/multiindex/test_chaining_and_caching.py +@@ -12,32 +12,6 @@ from pandas import ( + import pandas._testing as tm + + +-def test_detect_chained_assignment(using_copy_on_write): +- # Inplace ops, originally from: +- # https://stackoverflow.com/questions/20508968/series-fillna-in-a-multiindex-dataframe-does-not-fill-is-this-a-bug +- a = [12, 23] +- b = [123, None] +- c = [1234, 2345] +- d = [12345, 23456] +- tuples = [("eyes", "left"), ("eyes", "right"), ("ears", "left"), ("ears", "right")] +- events = { +- ("eyes", "left"): a, +- ("eyes", "right"): b, +- ("ears", "left"): c, +- ("ears", "right"): d, +- } +- multiind = MultiIndex.from_tuples(tuples, names=["part", "side"]) +- zed = DataFrame(events, index=["a", "b"], columns=multiind) +- +- if using_copy_on_write: +- with tm.raises_chained_assignment_error(): +- zed["eyes"]["right"].fillna(value=555, inplace=True) +- else: +- msg = "A value is trying to be set on a copy of a slice from a DataFrame" +- with pytest.raises(SettingWithCopyError, match=msg): +- zed["eyes"]["right"].fillna(value=555, inplace=True) +- +- + @td.skip_array_manager_invalid_test # with ArrayManager df.loc[0] is not a view + def test_cache_updating(using_copy_on_write): + # 5216 +--- a/pandas/tests/indexing/test_chaining_and_caching.py ++++ b/pandas/tests/indexing/test_chaining_and_caching.py +@@ -422,21 +422,6 @@ class TestChaining: + str(df) + + @pytest.mark.arm_slow +- def test_detect_chained_assignment_undefined_column(self, using_copy_on_write): +- # from SO: +- # https://stackoverflow.com/questions/24054495/potential-bug-setting-value-for-undefined-column-using-iloc +- df = DataFrame(np.arange(0, 9), columns=["count"]) +- df["group"] = "b" +- df_original = df.copy() +- +- if using_copy_on_write: +- with tm.raises_chained_assignment_error(): +- df.iloc[0:5]["group"] = "a" +- tm.assert_frame_equal(df, df_original) +- else: +- with pytest.raises(SettingWithCopyError, match=msg): +- df.iloc[0:5]["group"] = "a" +- + @pytest.mark.arm_slow + def test_detect_chained_assignment_changing_dtype( + self, using_array_manager, using_copy_on_write diff --git a/patches/series b/patches/series new file mode 100644 index 00000000..d2bbb2b1 --- /dev/null +++ b/patches/series @@ -0,0 +1,38 @@ +deb_nonversioneer_version.patch +deb_doc_donotoverride_PYTHONPATH.patch +xfail_tests_nonintel_io.patch +deb_disable_googleanalytics.patch +mathjax-path.patch +use_system_intersphinx.patch +contributor_list_not_in_tarball.patch +fix_random_seeds.patch +privacy.patch +find_test_data.patch +remove_ccbysa_snippets.patch +numba_fail_32bit.patch +hurd_compat.patch +skip_test_missing_required_dependency.patch +fix_overly_arch_specific_xfails.patch +tests_dont_assume_64bit.patch +armel_ignore_nonwarning.patch +no_sphinx_toggleprompt.patch +sphinx_old_pydata_theme.patch +1029251_ignore_rounding_error.patch +sphinx7_compat.patch +tests_dont_assume_endian.patch +accept_system_tzdata.patch +numba_warn_nonx86.patch +mips_pow_nan.patch +allow_no_matplotlib.patch +unbreak_clean.patch +ignore_ipython_exceptions.patch +xarray_version_workaround.patch +allow_no_openpyxl.patch +2p1_openpyxl_errors.patch +pytables_python3p12.patch +ignore_python3p12_deprecations.patch +test_complibs_blosc2.patch +sum_loosen_test_tolerance.patch +xarray2024_compat.patch +1068104_time64.patch +1068422_ignore_dask_tests.patch diff --git a/patches/skip_test_missing_required_dependency.patch b/patches/skip_test_missing_required_dependency.patch new file mode 100644 index 00000000..55accb5e --- /dev/null +++ b/patches/skip_test_missing_required_dependency.patch @@ -0,0 +1,15 @@ +Description: Skip test that fails from outside the source tree + +Author: Rebecca N. Palmer +Forwarded: not-needed + +--- a/pandas/tests/test_downstream.py ++++ b/pandas/tests/test_downstream.py +@@ -199,6 +199,7 @@ def test_yaml_dump(df): + + + @pytest.mark.single_cpu ++@pytest.mark.skip(reason="Fails in an installed package as it can't find pandas") + def test_missing_required_dependency(): + # GH 23868 + # To ensure proper isolation, we pass these flags diff --git a/patches/sphinx7_compat.patch b/patches/sphinx7_compat.patch new file mode 100644 index 00000000..099d019c --- /dev/null +++ b/patches/sphinx7_compat.patch @@ -0,0 +1,24 @@ +Description: Allow building docs with Sphinx 7 + +Author: Rebecca N. Palmer +Bug-Debian: https://bugs.debian.org/1042672 +Forwarded: https://github.com/pandas-dev/pandas/pull/54653 + +--- a/doc/source/conf.py ++++ b/doc/source/conf.py +@@ -162,7 +162,7 @@ master_doc = "index" + # General information about the project. + project = "pandas" + # We have our custom "pandas_footer.html" template, using copyright for the current year +-copyright = f"{datetime.now().year}" ++copyright = f"{datetime.now().year} " + + # The version info for the project you're documenting, acts as replacement for + # |version| and |release|, also used in various other places throughout the +--- a/doc/_templates/pandas_footer.html ++++ b/doc/_templates/pandas_footer.html +@@ -1,3 +1,3 @@ +

+- © {{copyright}} pandas via NumFOCUS, Inc. Hosted by OVHcloud. ++ © {{copyright}}pandas via NumFOCUS, Inc. Hosted by OVHcloud. +

diff --git a/patches/sphinx_old_pydata_theme.patch b/patches/sphinx_old_pydata_theme.patch new file mode 100644 index 00000000..768e1b99 --- /dev/null +++ b/patches/sphinx_old_pydata_theme.patch @@ -0,0 +1,34 @@ +Description: Allow building with Debian's pydata-sphinx-theme + +This is currently too old to have all the options upstream expects + +--- a/doc/source/conf.py ++++ b/doc/source/conf.py +@@ -241,12 +241,7 @@ html_theme_options = { + "footer_start": ["pandas_footer", "sphinx-version"], + "github_url": "https://github.com/pandas-dev/pandas", + "twitter_url": "https://twitter.com/pandas_dev", +- "logo": {"image_dark": "https://pandas.pydata.org/static/img/pandas_white.svg"}, +- "navbar_end": ["version-switcher", "theme-switcher", "navbar-icon-links"], +- "switcher": { +- "json_url": "https://pandas.pydata.org/versions.json", +- "version_match": switcher_version, +- }, ++ "navbar_end": ["navbar-icon-links"], + "icon_links": [ + { + "name": "Mastodon", +--- a/doc/_templates/sidebar-nav-bs.html ++++ b/doc/_templates/sidebar-nav-bs.html +@@ -1,9 +1,9 @@ + diff --git a/patches/sum_loosen_test_tolerance.patch b/patches/sum_loosen_test_tolerance.patch new file mode 100644 index 00000000..ece54488 --- /dev/null +++ b/patches/sum_loosen_test_tolerance.patch @@ -0,0 +1,19 @@ +Description: Don't fail sum test on near-cancelling inputs + +Failed in 1.5.3+dfsg-11 after it happened to select an input that +cancelled to ~1e-5 (on i386, so x87 excess precision might be involved) + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/frame/test_reductions.py ++++ b/pandas/tests/frame/test_reductions.py +@@ -258,7 +258,7 @@ class TestDataFrameAnalytics: + np.sum, + mixed_float_frame.astype("float32"), + check_dtype=False, +- rtol=1e-3, ++ rtol=1e-3, atol=1e-3, + ) + + assert_stat_op_calc( diff --git a/patches/test_complibs_blosc2.patch b/patches/test_complibs_blosc2.patch new file mode 100644 index 00000000..88c43759 --- /dev/null +++ b/patches/test_complibs_blosc2.patch @@ -0,0 +1,19 @@ +Description: Allow blosc2 to report the type used + +e.g. the bug had blosc2:blosclz + +Author: Rebecca N. Palmer +Bug-Debian: https://bugs.debian.org/1061043 +Forwarded: no - upstream 55524 xfailed some but not all cases + +--- a/pandas/tests/io/pytables/test_file_handling.py ++++ b/pandas/tests/io/pytables/test_file_handling.py +@@ -268,7 +268,7 @@ def test_complibs(tmp_path, lvl, lib): + if lvl == 0: + assert node.filters.complib is None + else: +- assert node.filters.complib == lib ++ assert ((node.filters.complib == lib) or (lib=='blosc2' and node.filters.complib.startswith('blosc2:'))) + + + @pytest.mark.xfail(condition=is_crashing_arch,reason="https://bugs.debian.org/790925",strict=False,run=False) diff --git a/patches/tests_dont_assume_64bit.patch b/patches/tests_dont_assume_64bit.patch new file mode 100644 index 00000000..1cc2ad5c --- /dev/null +++ b/patches/tests_dont_assume_64bit.patch @@ -0,0 +1,207 @@ +Description: Fix test failures on 32-bit systems + +Author: Rebecca N. Palmer +Bug-Debian: partly https://bugs.debian.org/1026351 +Forwarded: no + +--- a/pandas/core/arrays/_ranges.py ++++ b/pandas/core/arrays/_ranges.py +@@ -50,12 +50,12 @@ def generate_regular_range( + ndarray[np.int64] + Representing the given resolution. + """ +- istart = start._value if start is not None else None +- iend = end._value if end is not None else None ++ istart = int(start._value) if start is not None else None ++ iend = int(end._value) if end is not None else None + freq.nanos # raises if non-fixed frequency + td = Timedelta(freq) +- b: int | np.int64 | np.uint64 +- e: int | np.int64 | np.uint64 ++ b: int ++ e: int + try: + td = td.as_unit( # pyright: ignore[reportGeneralTypeIssues] + unit, round_ok=False +@@ -98,7 +98,7 @@ def generate_regular_range( + + def _generate_range_overflow_safe( + endpoint: int, periods: int, stride: int, side: str = "start" +-) -> np.int64 | np.uint64: ++) -> int: + """ + Calculate the second endpoint for passing to np.arange, checking + to avoid an integer overflow. Catch OverflowError and re-raise +@@ -117,7 +117,7 @@ def _generate_range_overflow_safe( + + Returns + ------- +- other_end : np.int64 | np.uint64 ++ other_end : int + + Raises + ------ +@@ -159,13 +159,13 @@ def _generate_range_overflow_safe( + remaining = periods - mid_periods + assert 0 < remaining < periods, (remaining, periods, endpoint, stride) + +- midpoint = int(_generate_range_overflow_safe(endpoint, mid_periods, stride, side)) ++ midpoint = _generate_range_overflow_safe(endpoint, mid_periods, stride, side) + return _generate_range_overflow_safe(midpoint, remaining, stride, side) + + + def _generate_range_overflow_safe_signed( + endpoint: int, periods: int, stride: int, side: str +-) -> np.int64 | np.uint64: ++) -> int: + """ + A special case for _generate_range_overflow_safe where `periods * stride` + can be calculated without overflowing int64 bounds. +@@ -183,7 +183,7 @@ def _generate_range_overflow_safe_signed + # Putting this into a DatetimeArray/TimedeltaArray + # would incorrectly be interpreted as NaT + raise OverflowError +- return result ++ return int(result) + except (FloatingPointError, OverflowError): + # with endpoint negative and addend positive we risk + # FloatingPointError; with reversed signed we risk OverflowError +@@ -202,7 +202,7 @@ def _generate_range_overflow_safe_signed + i64max = np.uint64(i8max) + assert uresult > i64max + if uresult <= i64max + np.uint64(stride): +- return uresult ++ return int(uresult) + + raise OutOfBoundsDatetime( + f"Cannot generate range with {side}={endpoint} and periods={periods}" +--- a/pandas/tests/groupby/test_groupby.py ++++ b/pandas/tests/groupby/test_groupby.py +@@ -5,6 +5,7 @@ import re + import numpy as np + import pytest + ++from pandas.compat import IS64 + from pandas.errors import ( + PerformanceWarning, + SpecificationError, +@@ -2545,6 +2546,7 @@ def test_groupby_series_with_tuple_name( + tm.assert_series_equal(result, expected) + + ++@pytest.mark.xfail(not IS64, reason="GH#38778: fail on 32-bit system", strict=False) + @pytest.mark.parametrize( + "func, values", [("sum", [97.0, 98.0]), ("mean", [24.25, 24.5])] + ) +@@ -2557,6 +2559,7 @@ def test_groupby_numerical_stability_sum + tm.assert_frame_equal(result, expected) + + ++@pytest.mark.xfail(not IS64, reason="GH#38778: fail on 32-bit system", strict=False) + def test_groupby_numerical_stability_cumsum(): + # GH#38934 + data = [1e16, 1e16, 97, 98, -5e15, -5e15, -5e15, -5e15] +--- a/pandas/tests/test_sorting.py ++++ b/pandas/tests/test_sorting.py +@@ -8,6 +8,7 @@ import pytest + from pandas.compat import ( + is_ci_environment, + is_platform_windows, ++ IS64, + ) + + from pandas import ( +@@ -223,6 +224,7 @@ class TestMerge: + assert result.name is None + + @pytest.mark.slow ++ @pytest.mark.xfail(condition=not IS64, reason="assumes default int is int64") + @pytest.mark.parametrize("how", ["left", "right", "outer", "inner"]) + def test_int64_overflow_how_merge(self, left_right, how): + left, right = left_right +@@ -233,6 +235,7 @@ class TestMerge: + tm.assert_frame_equal(out, merge(left, right, how=how, sort=True)) + + @pytest.mark.slow ++ @pytest.mark.xfail(condition=not IS64, reason="assumes default int is int64") + def test_int64_overflow_sort_false_order(self, left_right): + left, right = left_right + +@@ -244,6 +247,7 @@ class TestMerge: + tm.assert_frame_equal(right, out[right.columns.tolist()]) + + @pytest.mark.slow ++ @pytest.mark.xfail(condition=not IS64, reason="assumes default int is int64", strict=False) + @pytest.mark.parametrize("how", ["left", "right", "outer", "inner"]) + @pytest.mark.parametrize("sort", [True, False]) + def test_int64_overflow_one_to_many_none_match(self, how, sort): +--- a/pandas/tests/frame/test_stack_unstack.py ++++ b/pandas/tests/frame/test_stack_unstack.py +@@ -21,6 +21,7 @@ from pandas import ( + ) + import pandas._testing as tm + from pandas.core.reshape import reshape as reshape_lib ++from pandas.compat import IS64 + + + @pytest.fixture(params=[True, False]) +@@ -2092,6 +2093,7 @@ Thu,Lunch,Yes,51.51,17""" + tm.assert_frame_equal(recons, df) + + @pytest.mark.slow ++ @pytest.mark.xfail(condition=not IS64, reason="assumes default int is int64") + def test_unstack_number_of_levels_larger_than_int32(self, monkeypatch): + # GH#20601 + # GH 26314: Change ValueError to PerformanceWarning +--- a/pandas/tests/reshape/test_pivot.py ++++ b/pandas/tests/reshape/test_pivot.py +@@ -26,6 +26,7 @@ import pandas._testing as tm + from pandas.api.types import CategoricalDtype as CDT + from pandas.core.reshape import reshape as reshape_lib + from pandas.core.reshape.pivot import pivot_table ++from pandas.compat import IS64 + + + @pytest.fixture(params=[True, False]) +@@ -2059,6 +2060,7 @@ class TestPivotTable: + tm.assert_frame_equal(result, expected) + + @pytest.mark.slow ++ @pytest.mark.xfail(condition=not IS64, reason="assumes default int is int64") + def test_pivot_number_of_levels_larger_than_int32(self, monkeypatch): + # GH 20601 + # GH 26314: Change ValueError to PerformanceWarning +--- a/pandas/tests/test_downstream.py ++++ b/pandas/tests/test_downstream.py +@@ -19,6 +19,7 @@ from pandas import ( + TimedeltaIndex, + ) + import pandas._testing as tm ++from pandas.compat import IS64 + from pandas.core.arrays import ( + DatetimeArray, + TimedeltaArray, +@@ -236,6 +237,11 @@ def test_missing_required_dependency(): + assert name in output + + ++@pytest.mark.xfail( ++ condition=not IS64, ++ reason="dask has different nativesize-int vs int64 type rules", ++ strict=False, ++) + def test_frame_setitem_dask_array_into_new_col(): + # GH#47128 + +--- a/pandas/tests/series/methods/test_round.py ++++ b/pandas/tests/series/methods/test_round.py +@@ -30,8 +30,7 @@ class TestSeriesRound: + def test_round_numpy_with_nan(self, any_float_dtype): + # See GH#14197 + ser = Series([1.53, np.nan, 0.06], dtype=any_float_dtype) +- with tm.assert_produces_warning(None): +- result = ser.round() ++ result = ser.round() # on armhf, numpy warns + expected = Series([2.0, np.nan, 0.0], dtype=any_float_dtype) + tm.assert_series_equal(result, expected) + diff --git a/patches/tests_dont_assume_endian.patch b/patches/tests_dont_assume_endian.patch new file mode 100644 index 00000000..e401ee09 --- /dev/null +++ b/patches/tests_dont_assume_endian.patch @@ -0,0 +1,31 @@ +Description: Don't assume little-endian in test references + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/tests/indexes/interval/test_constructors.py ++++ b/pandas/tests/indexes/interval/test_constructors.py +@@ -20,7 +20,7 @@ from pandas import ( + import pandas._testing as tm + from pandas.core.arrays import IntervalArray + import pandas.core.common as com +- ++from pandas.compat import is_platform_little_endian + + @pytest.fixture(params=[None, "foo"]) + def name(request): +@@ -41,12 +41,12 @@ class ConstructorTests: + (Index(np.arange(-10, 11, dtype=np.int64)), np.int64), + (Index(np.arange(10, 31, dtype=np.uint64)), np.uint64), + (Index(np.arange(20, 30, 0.5), dtype=np.float64), np.float64), +- (date_range("20180101", periods=10), "M8[ns]"), + ( + date_range("20180101", periods=10, tz="US/Eastern"), + "datetime64[ns, US/Eastern]", + ), +- (timedelta_range("1 day", periods=10), "m8[ns]"), + ] + ) + def breaks_and_expected_subtype(self, request): diff --git a/patches/unbreak_clean.patch b/patches/unbreak_clean.patch new file mode 100644 index 00000000..80bca5e1 --- /dev/null +++ b/patches/unbreak_clean.patch @@ -0,0 +1,24 @@ +Description: Don't crash on clean + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/setup.py ++++ b/setup.py +@@ -152,14 +152,14 @@ class CleanCommand(Command): + ".orig", + ): + self._clean_me.append(filepath) +- self._clean_trees.append(pjoin(root, d) for d in dirs if d == "__pycache__") ++ self._clean_trees.extend([pjoin(root, d) for d in dirs if d == "__pycache__"]) + + # clean the generated pxi files + for pxifile in _pxifiles: + pxifile_replaced = pxifile.replace(".pxi.in", ".pxi") + self._clean_me.append(pxifile_replaced) + +- self._clean_trees.append(d for d in ("build", "dist") if os.path.exists(d)) ++ self._clean_trees.extend([d for d in ("build", "dist") if os.path.exists(d)]) + + def finalize_options(self): + pass diff --git a/patches/use_system_intersphinx.patch b/patches/use_system_intersphinx.patch new file mode 100644 index 00000000..d28a728f --- /dev/null +++ b/patches/use_system_intersphinx.patch @@ -0,0 +1,27 @@ +Description: Use packaged intersphinx indexes + +Author: Rebecca N. Palmer +Bug-Debian: https://bugs.debian.org/876417 +Forwarded: not-needed + +--- a/doc/source/conf.py ++++ b/doc/source/conf.py +@@ -451,12 +451,12 @@ latex_documents = [ + if include_api: + intersphinx_mapping = { + "dateutil": ("https://dateutil.readthedocs.io/en/latest/", None), +- "matplotlib": ("https://matplotlib.org/stable/", None), +- "numpy": ("https://numpy.org/doc/stable/", None), +- "pandas-gbq": ("https://pandas-gbq.readthedocs.io/en/latest/", None), +- "py": ("https://pylib.readthedocs.io/en/latest/", None), +- "python": ("https://docs.python.org/3/", None), +- "scipy": ("https://docs.scipy.org/doc/scipy/", None), ++ "matplotlib": ("https://matplotlib.org/stable/", None), # no longer has a -doc in Debian "/usr/share/doc/python-matplotlib-doc/html/objects.inv" ++ "numpy": ("https://numpy.org/doc/stable/", None), # no longer has a -doc in Debian "/usr/share/doc/python-numpy-doc/html/objects.inv" ++ "pandas-gbq": ("https://pandas-gbq.readthedocs.io/en/latest/", None), # not in Debian ++ "py": ("https://pylib.readthedocs.io/en/latest/", None), # no -doc in Debian ++ "python": ("https://docs.python.org/3/", "/usr/share/doc/python3-doc/html/objects.inv"), ++ "scipy": ("https://docs.scipy.org/doc/scipy/", ("/usr/share/doc/python-scipy-doc/html/objects.inv","/usr/share/doc/python-scipy/html/objects.inv")), + "pyarrow": ("https://arrow.apache.org/docs/", None), + } + diff --git a/patches/xarray2024_compat.patch b/patches/xarray2024_compat.patch new file mode 100644 index 00000000..a20826cb --- /dev/null +++ b/patches/xarray2024_compat.patch @@ -0,0 +1,38 @@ +Description: Avoid test-failing xarray warning + +Author: Luke Manley +Origin: upstream https://github.com/pandas-dev/pandas/pull/56949 +Bug-Debian: https://bugs.debian.org/1066801 +Forwarded: not-needed + +--- a/pandas/tests/generic/test_to_xarray.py ++++ b/pandas/tests/generic/test_to_xarray.py +@@ -41,7 +41,7 @@ class TestDataFrameToXArray: + df.index.name = "foo" + df.columns.name = "bar" + result = df.to_xarray() +- assert result.dims["foo"] == 3 ++ assert result.sizes["foo"] == 3 + assert len(result.coords) == 1 + assert len(result.data_vars) == 8 + tm.assert_almost_equal(list(result.coords.keys()), ["foo"]) +@@ -60,7 +60,7 @@ class TestDataFrameToXArray: + + df.index.name = "foo" + result = df[0:0].to_xarray() +- assert result.dims["foo"] == 0 ++ assert result.sizes["foo"] == 0 + assert isinstance(result, Dataset) + + def test_to_xarray_with_multiindex(self, df): +@@ -69,8 +69,8 @@ class TestDataFrameToXArray: + # MultiIndex + df.index = MultiIndex.from_product([["a"], range(3)], names=["one", "two"]) + result = df.to_xarray() +- assert result.dims["one"] == 1 +- assert result.dims["two"] == 3 ++ assert result.sizes["one"] == 1 ++ assert result.sizes["two"] == 3 + assert len(result.coords) == 2 + assert len(result.data_vars) == 8 + tm.assert_almost_equal(list(result.coords.keys()), ["one", "two"]) diff --git a/patches/xarray_version_workaround.patch b/patches/xarray_version_workaround.patch new file mode 100644 index 00000000..924000f9 --- /dev/null +++ b/patches/xarray_version_workaround.patch @@ -0,0 +1,16 @@ +Description: Work around xarray wrongly reporting its version + +Author: Rebecca N. Palmer +Forwarded: no + +--- a/pandas/compat/_optional.py ++++ b/pandas/compat/_optional.py +@@ -46,7 +46,7 @@ VERSIONS = { + "sqlalchemy": "1.4.36", + "tables": "3.7.0", + "tabulate": "0.8.10", +- "xarray": "2022.03.0", ++ "xarray": "999",#Debian xarray 2023.08.0-1 says it's 999 + "xlrd": "2.0.1", + "xlsxwriter": "3.0.3", + "zstandard": "0.17.0", diff --git a/patches/xfail_tests_nonintel_io.patch b/patches/xfail_tests_nonintel_io.patch new file mode 100644 index 00000000..cf2ff63f --- /dev/null +++ b/patches/xfail_tests_nonintel_io.patch @@ -0,0 +1,269 @@ +Description: HDF5 and Stata I/O are broken on some architectures + +Fix some issues, warn on use and xfail tests for the remainder + +Everything that has a run=False xfail in here should also be in +the run-and-ignore set in debian/tests/numbatests + +armhf TestHDF5Store::test*encoding only sometimes crashes +(1.1.3+dfsg-1 passed on build but failed autopkgtest) + +HDF5 and Stata are known to fail on big-endian architectures +Stata was previously seen to fail on qemu-ppc64el, but not real ppc64el + +Author: Andreas Tille , Graham Inggs , Yaroslav Halchenko , Rebecca N. Palmer +Bug-Debian: https://bugs.debian.org/877419 +Bug: partly https://github.com/pandas-dev/pandas/issues/54396 +Forwarded: no + +--- a/pyproject.toml ++++ b/pyproject.toml +@@ -480,6 +480,7 @@ filterwarnings = [ + "error:::pandas", + "error::ResourceWarning", + "error::pytest.PytestUnraisableExceptionWarning", ++ "ignore:Non-x86 system detected:UserWarning:pandas", + # TODO(PY311-minimum): Specify EncodingWarning + # Ignore 3rd party EncodingWarning but raise on pandas' + "ignore:.*encoding.* argument not specified", +--- a/pandas/io/pytables.py ++++ b/pandas/io/pytables.py +@@ -24,6 +24,10 @@ from typing import ( + overload, + ) + import warnings ++import platform ++import sys ++from pandas.compat import is_platform_little_endian ++warn_hdf_platform = "Non-x86 system detected, HDF(5) format I/O may give wrong results (particularly on files created with older versions) or crash - https://bugs.debian.org/877419" if (((platform.uname()[4].startswith('arm') or platform.uname()[4].startswith('aarch')) and sys.maxsize<2**33) or not is_platform_little_endian()) else False + + import numpy as np + +@@ -559,6 +563,8 @@ class HDFStore: + fletcher32: bool = False, + **kwargs, + ) -> None: ++ if warn_hdf_platform: ++ warnings.warn(warn_hdf_platform) + if "format" in kwargs: + raise ValueError("format is not a defined argument for HDFStore") + +@@ -780,7 +786,10 @@ class HDFStore: + self._handle.flush() + if fsync: + with suppress(OSError): +- os.fsync(self._handle.fileno()) ++ if is_platform_little_endian(): ++ os.fsync(self._handle.fileno()) ++ else: ++ os.sync() # due to a pytables bad-cast bug, fileno is invalid on 64-bit big-endian# + + def get(self, key: str): + """ +--- a/pandas/io/stata.py ++++ b/pandas/io/stata.py +@@ -30,6 +30,8 @@ from typing import ( + cast, + ) + import warnings ++from pandas.compat import is_platform_little_endian ++warn_stata_platform = "Non-x86 system detected, Stata format I/O may give wrong results (particularly on strings) - https://bugs.debian.org/877419" if not is_platform_little_endian() else False + + import numpy as np + +@@ -976,6 +978,8 @@ class StataParser: + # NOTE: the byte type seems to be reserved for categorical variables + # with a label, but the underlying variable is -127 to 100 + # we're going to drop the label and cast to int ++ if warn_stata_platform: ++ warnings.warn(warn_stata_platform) + self.DTYPE_MAP = dict( + [(i, np.dtype(f"S{i}")) for i in range(1, 245)] + + [ +--- a/pandas/tests/io/pytables/test_file_handling.py ++++ b/pandas/tests/io/pytables/test_file_handling.py +@@ -26,6 +26,10 @@ from pandas.tests.io.pytables.common imp + ensure_clean_store, + tables, + ) ++import platform ++import re ++import sys ++is_crashing_arch=bool((platform.uname()[4].startswith('arm') or platform.uname()[4].startswith('aarch')) and sys.maxsize<2**33) # meant for armhf, though this form will also skip on armel - uname = kernel arch + + from pandas.io import pytables + from pandas.io.pytables import Term +@@ -267,6 +271,7 @@ def test_complibs(tmp_path, lvl, lib): + assert node.filters.complib == lib + + ++@pytest.mark.xfail(condition=is_crashing_arch,reason="https://bugs.debian.org/790925",strict=False,run=False) + @pytest.mark.skipif( + not is_platform_little_endian(), reason="reason platform is not little endian" + ) +@@ -299,6 +304,7 @@ def test_encoding(setup_path): + ], + ) + @pytest.mark.parametrize("dtype", ["category", object]) ++@pytest.mark.xfail(condition=is_crashing_arch,reason="https://bugs.debian.org/790925",strict=False,run=False) + def test_latin_encoding(tmp_path, setup_path, dtype, val): + enc = "latin-1" + nan_rep = "" +--- a/pandas/tests/io/pytables/test_append.py ++++ b/pandas/tests/io/pytables/test_append.py +@@ -21,6 +21,10 @@ from pandas.tests.io.pytables.common imp + _maybe_remove, + ensure_clean_store, + ) ++import platform ++import re ++import sys ++is_crashing_arch=bool((platform.uname()[4].startswith('arm') or platform.uname()[4].startswith('aarch')) and sys.maxsize<2**33) # meant for armhf, though this form will also skip on armel - uname = kernel arch + + pytestmark = pytest.mark.single_cpu + +@@ -275,6 +279,7 @@ def test_append_all_nans(setup_path): + tm.assert_frame_equal(store["df2"], df, check_index_type=True) + + ++@pytest.mark.xfail(condition=is_crashing_arch,reason="https://bugs.debian.org/790925",strict=False,run=False) + def test_append_frame_column_oriented(setup_path): + with ensure_clean_store(setup_path) as store: + # column oriented +--- a/pandas/tests/io/pytables/test_store.py ++++ b/pandas/tests/io/pytables/test_store.py +@@ -29,6 +29,10 @@ from pandas.io.pytables import ( + HDFStore, + read_hdf, + ) ++import platform ++import re ++import sys ++is_crashing_arch=bool((platform.uname()[4].startswith('arm') or platform.uname()[4].startswith('aarch')) and sys.maxsize<2**33) # meant for armhf, though this form will also skip on armel - uname = kernel arch + + pytestmark = pytest.mark.single_cpu + +@@ -759,6 +763,7 @@ def test_start_stop_fixed(setup_path): + df.iloc[8:10, -2] = np.nan + + ++@pytest.mark.xfail(condition=is_crashing_arch,reason="https://bugs.debian.org/790925",strict=False,run=False) + def test_select_filter_corner(setup_path): + df = DataFrame(np.random.default_rng(2).standard_normal((50, 100))) + df.index = [f"{c:3d}" for c in df.index] +--- a/pandas/tests/io/pytables/test_read.py ++++ b/pandas/tests/io/pytables/test_read.py +@@ -6,7 +6,7 @@ import numpy as np + import pytest + + from pandas._libs.tslibs import Timestamp +-from pandas.compat import is_platform_windows ++from pandas.compat import is_platform_windows, is_platform_little_endian + + import pandas as pd + from pandas import ( +@@ -167,6 +167,7 @@ def test_pytables_native2_read(datapath) + assert isinstance(d1, DataFrame) + + ++@pytest.mark.xfail(condition=not is_platform_little_endian(),reason="known failure of hdf on non-little endian",strict=False,raises=AttributeError) + def test_legacy_table_fixed_format_read_py2(datapath): + # GH 24510 + # legacy table with fixed format written in Python 2 +@@ -182,6 +183,7 @@ def test_legacy_table_fixed_format_read_ + tm.assert_frame_equal(expected, result) + + ++@pytest.mark.xfail(condition=not is_platform_little_endian(),reason="known failure of hdf on non-little endian",strict=False,raises=AttributeError) + def test_legacy_table_fixed_format_read_datetime_py2(datapath): + # GH 31750 + # legacy table with fixed format and datetime64 column written in Python 2 +@@ -364,6 +366,7 @@ def test_read_hdf_series_mode_r(tmp_path + + @pytest.mark.filterwarnings(r"ignore:Period with BDay freq is deprecated:FutureWarning") + @pytest.mark.filterwarnings(r"ignore:PeriodDtype\[B\] is deprecated:FutureWarning") ++@pytest.mark.xfail(condition=not is_platform_little_endian(),reason="known failure of hdf on non-little endian",strict=False,raises=AttributeError) + def test_read_py2_hdf_file_in_py3(datapath): + # GH 16781 + +--- a/pandas/tests/io/test_stata.py ++++ b/pandas/tests/io/test_stata.py +@@ -32,6 +32,8 @@ from pandas.io.stata import ( + read_stata, + ) + ++from pandas.compat import is_platform_little_endian ++pytestmark = pytest.mark.xfail(condition=not is_platform_little_endian(),reason="known failure of test_stata on non-little endian",strict=False) + + @pytest.fixture + def mixed_frame(): +--- a/pandas/tests/io/pytables/test_timezones.py ++++ b/pandas/tests/io/pytables/test_timezones.py +@@ -8,6 +8,7 @@ import pytest + + from pandas._libs.tslibs.timezones import maybe_get_tz + import pandas.util._test_decorators as td ++from pandas.compat import is_platform_little_endian + + import pandas as pd + from pandas import ( +@@ -308,6 +309,7 @@ def test_store_timezone(setup_path): + tm.assert_frame_equal(result, df) + + ++@pytest.mark.xfail(condition=not is_platform_little_endian(),reason="known failure of hdf on non-little endian",strict=False,raises=AttributeError) + def test_legacy_datetimetz_object(datapath): + # legacy from < 0.17.0 + # 8260 +@@ -360,6 +362,7 @@ def test_read_with_where_tz_aware_index( + tm.assert_frame_equal(result, expected) + + ++@pytest.mark.xfail(condition=not is_platform_little_endian(),reason="known failure of hdf on non-little endian",strict=False,raises=AttributeError) + def test_py2_created_with_datetimez(datapath): + # The test HDF5 file was created in Python 2, but could not be read in + # Python 3. +--- a/pandas/tests/io/test_common.py ++++ b/pandas/tests/io/test_common.py +@@ -17,7 +17,7 @@ import tempfile + + import pytest + +-from pandas.compat import is_platform_windows ++from pandas.compat import is_platform_windows, is_platform_little_endian + import pandas.util._test_decorators as td + + import pandas as pd +@@ -300,11 +300,11 @@ Look,a snake,🐍""" + "pyarrow", + ("io", "data", "feather", "feather-0_3_1.feather"), + ), +- ( ++ pytest.param( + pd.read_hdf, + "tables", + ("io", "data", "legacy_hdf", "datetimetz_object.h5"), +- ), ++ marks=pytest.mark.xfail(condition=not is_platform_little_endian(),reason="known failure of hdf on non-little endian",strict=False,raises=AttributeError)), + (pd.read_stata, "os", ("io", "data", "stata", "stata10_115.dta")), + (pd.read_sas, "os", ("io", "sas", "data", "test1.sas7bdat")), + (pd.read_json, "os", ("io", "json", "data", "tsframe_v012.json")), +--- a/pandas/_testing/_warnings.py ++++ b/pandas/_testing/_warnings.py +@@ -12,6 +12,7 @@ from typing import ( + cast, + ) + import warnings ++import platform + + from pandas.compat import PY311 + +@@ -186,6 +187,8 @@ def _assert_caught_no_extra_warnings( + # pyproject.toml errors on EncodingWarnings in pandas + # Ignore EncodingWarnings from other libraries + continue ++ if (actual_warning.category==UserWarning and "Non-x86 system detected" in str(actual_warning.message) and not bool(re.match('i.?86|x86',platform.uname()[4]))) or (actual_warning.category==RuntimeWarning and "invalid value encountered" in str(actual_warning.message) and 'mips' in platform.uname()[4]): ++ continue + extra_warnings.append( + ( + actual_warning.category.__name__, diff --git a/python-pandas-doc.doc-base b/python-pandas-doc.doc-base new file mode 100644 index 00000000..b29cae02 --- /dev/null +++ b/python-pandas-doc.doc-base @@ -0,0 +1,7 @@ +Document: python3-pandas +Title: pandas - powerful Python data analysis toolkit +Section: Science/Data Analysis + +Format: HTML +Index: /usr/share/doc/python-pandas-doc/html/index.html +Files: /usr/share/doc/python-pandas-doc/html/* diff --git a/python-pandas-doc.docs b/python-pandas-doc.docs new file mode 100644 index 00000000..8137b041 --- /dev/null +++ b/python-pandas-doc.docs @@ -0,0 +1 @@ +doc/build/html diff --git a/python-pandas-doc.links b/python-pandas-doc.links new file mode 100644 index 00000000..718f2af1 --- /dev/null +++ b/python-pandas-doc.links @@ -0,0 +1,3 @@ +usr/share/doc/python-pandas-doc/html/whatsnew/index.html.gz usr/share/doc/python-pandas-doc/NEWS.html.gz +usr/share/doc/python-pandas-doc/html/whatsnew/index.html.gz usr/share/doc/python3-pandas/NEWS.html.gz +usr/share/javascript/mathjax/MathJax.js usr/share/doc/python-pandas-doc/html/_static/MathJax.js diff --git a/rules b/rules new file mode 100755 index 00000000..d5ccb0df --- /dev/null +++ b/rules @@ -0,0 +1,130 @@ +#!/usr/bin/make -f +# -*- mode: makefile; coding: utf-8 -*- + +export DEB_BUILD_MAINT_OPTIONS = hardening=+all +DPKG_EXPORT_BUILDFLAGS = 1 +include /usr/share/dpkg/buildflags.mk +include /usr/share/dpkg/pkg-info.mk + +PY3VERS := $(shell py3versions -vr) +PY3VER := $(shell py3versions -vd) +SOURCE_DATE:=$(shell date -u -d "@$(SOURCE_DATE_EPOCH)" "+%a, %d %b %Y" || echo "xxx, xx xxx xxxx") +SOURCE_TIME:=$(shell date -u -d "@$(SOURCE_DATE_EPOCH)" "+%T" || echo "xx:xx:xx") + +UVER := $(shell echo $(DEB_VERSION_UPSTREAM) | sed -e 's,+dfsg,,g') +# Python doesn't use ~ for rc +UVER_PY := $(shell echo $(UVER) | sed -e 's,[~],,g') +UVER_PYSHORT := $(shell echo $(UVER_PY) | sed -e 's,+git.*,,g') + +# Filter out tests with "marker expressions" and "keyword expressions". Ref: pytest(1) +ifeq ($(DEB_HOST_ARCH),$(filter $(DEB_HOST_ARCH), amd64 i386 kfreebsd-amd64 kfreebsd-i386 x32)) + PYTEST_MARKER := not network +else + PYTEST_MARKER := not network and not slow +endif +ifeq (,$(findstring mips,$(DEB_HOST_ARCH))$(findstring hppa,$(DEB_HOST_ARCH))$(findstring _ia64_,_$(DEB_HOST_ARCH)_)) + PYTEST_WARN_IGNORE := +else + # mips/hppa may have unusual NaN behaviour + # https://en.wikipedia.org/wiki/NaN#Encoding + # ia64 warns in test_groupby_quantile_all_na_group_masked (see 2.0.3+dfsg-6 build log) + PYTEST_WARN_IGNORE := -W "ignore:invalid value encountered:RuntimeWarning" +endif + +# for matplotlib etc +export HOME=$(CURDIR)/buildtmp + +# Split up the test suite to avoid running out of memory, use xvfb for plot tests, run but ignore potentially crashing tests; test_register_entrypoint expects an installed package, test_wrong_url needs internet, test_statsmodels is a circular dependency when adding a new Python version +# The echo-random-characters is to allow searching for fails that don't show the usual test failure message i.e. crashes/errors +# -v makes the log too long for salsa-ci +# the grep -q is because trying to test __pycache__ is an error in pytest 8+, #1063959 +export PYBUILD_TEST_ARGS=TEST_SUCCESS=true; cd {build_dir} ; for TEST_SUBSET in {build_dir}/pandas/tests/* ; do echo $$TEST_SUBSET | grep -q -e __pycache__ || PANDAS_CI=1 LC_ALL=C.UTF-8 xvfb-run -a -s "-screen 0 1280x1024x24 -noreset" {interpreter} -m pytest -s -m "$(PYTEST_MARKER)" $(PYTEST_WARN_IGNORE) -k "not test_register_entrypoint and not test_wrong_url and not test_statsmodels" --confcutdir={build_dir}/pandas --deb-data-root-dir={dir}/pandas/tests $$TEST_SUBSET || test $$? = 5 || TEST_SUCCESS=false && echo "rdjoqkol test state = $$TEST_SUCCESS"; done ; rm -rf test-data.xml .pytest_cache ; $$TEST_SUCCESS + +export PYBUILD_EXT_DESTDIR=debian/python3-pandas-lib +export PYBUILD_DESTDIR=debian/python3-pandas + +# try to prevent unsanctioned downloads +export http_proxy=http://127.0.0.1:9/ +export https_proxy=http://127.0.0.1:9/ + +export SHELL=/bin/bash + +# Mega rule +%: + : # Explicit build system to avoid use of all-in-1 Makefile + dh $@ --buildsystem=pybuild --with python3,numpy3,sphinxdoc + +# The *cython* rules are provided to allow using pre-built Cython files in distributions without a new enough Cython; they are not (and must not be) used in official Debian builds (including -backports). Use instructions: +# on a system with new enough Cython, run debian/rules cythonize - this will add a directory under debian/ +# uncomment the _uncythonize rule dependency below +# remove the cython3 Build-Depends from d/control +# copy to the older system and build as normal +# To upgrade to a new upstream version, this process must be repeated +# Warning - has not been tested for some time +_cythonize%: override_dh_clean # force removal of previous copies + python$(*:2=) setup.py cython + D=debian/cythonized-files$(*:2=) && \ + git rm -rf $$D || rm -rf $$D; \ + find pandas/ -regex '.*\.c\(\|pp\)' | while read f; do \ + grep -q 'Generated by Cython' "$$f" || continue; \ + mkdir -p "$$D/$$(dirname $$f)"; \ + cp "$$f" "$$D/$$(dirname $$f)"; \ + git add -f "$$D/$$f" || true; \ + done; \ + echo "$(UVER)" >| $$D/VERSION; git add $$D/VERSION || true + +_uncythonize%: + : # Make sure that cythonized sources are up-to-date + [ "$(UVER)" = "`cat debian/cythonized-files3/VERSION`" ] + echo "$*" | grep -q '^3' && PY=3 || PY= ; \ + echo "I: Using pre-Cython-ed files for Python $*"; \ + cd debian/cythonized-files$$PY/ ; \ + find . -regex '.*\.c\(\|pp\)' | while read f; do cp $$f ../../$$f; done + +cythonize: _cythonize3 + +override_dh_clean: + find pandas/ -regex '.*\.c\(\|pp\)' | xargs grep -l -e 'Generated by Cython' | xargs -r rm -f + # the || true is because this will fail without docutils (-arch or nodoc builds) + cd doc && LC_ALL=C.UTF-8 python3 make.py clean || true + rm -rf build buildtmp *-stamp doc/source/savefig doc/source/user_guide/styled.xlsx doc/source/index.rst + dh_clean + +override_dh_auto_build-arch: # ${PY3VERS:%=_uncythonize%} + mkdir -p buildtmp + [ -e pandas/__version.py ] || \ + echo -e "version = '$(UVER_PY)'\nshort_version = '$(UVER_PYSHORT)'" > pandas/__version.py + dh_auto_build + +override_dh_auto_build-indep: override_dh_auto_build-arch +ifeq (,$(filter nodoc,$(DEB_BUILD_OPTIONS))) + : # Build Documentation + cd doc && PYTHONPATH=$(CURDIR)/.pybuild/cpython3_$(PY3VER)/build LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 python3 make.py html + # strip build paths, object IDs and statsmodels timestamps for reproducibility, and online Javascript for privacy + for html in `find doc/build/html -name _modules -prune -o -name "*.html" -o -name "*.ipynb"` ; do \ + sed -i -e 's#$(CURDIR)/.pybuild/[^/]*/build/pandas/#/usr/lib/python3/dist-packages/pandas/#g' \ + -e 's#$(CURDIR)/debian/python3-pandas/usr/lib/python3/dist-packages/pandas/#/usr/lib/python3/dist-packages/pandas/#g' \ + -e 's# at 0x[0-9a-f]\{8,16\}\(>\|>\)# at 0xadde5de1e8ed\1#g' \ + -e 's#\(Date:.*\)[A-Z][a-z]\+, \+[0-9]\+,\? \+[A-Z][a-z]\+,\? \+[0-9]\+#\1$(SOURCE_DATE)#g' \ + -e 's#\(Time:.*\)[0-9][0-9]:[0-9][0-9]:[0-9][0-9]#\1$(SOURCE_TIME)#g' $${html} ; \ + done +endif + +override_dh_installdocs: + dh_installdocs -A *.md + # for NEWS.html.gz - put it here and use symlinks to avoid breaking internal links + gzip -c -n -9 debian/python-pandas-doc/usr/share/doc/python-pandas-doc/html/whatsnew/index.html > debian/python-pandas-doc/usr/share/doc/python-pandas-doc/html/whatsnew/index.html.gz || true + cp -av debian/contributors_list.txt debian/python-pandas-doc/usr/share/doc/python-pandas-doc || true + # deduplicate files - the ||true is because we only build-depend on jdupes if we're building documentation + jdupes -r -l debian/python-pandas-doc/usr/share/doc || true + + +## immediately useable documentation and exemplar scripts/data +override_dh_compress: + dh_compress -X.py -X.html -X.pdf -X.css -X.jpg -X.txt -X.js -X.json -X.rtc -Xobjects.inv + +# see PYBUILD_TEST_ARGS above +override_dh_auto_test: +ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) + PYBUILD_SYSTEM=custom dh_auto_test +endif diff --git a/salsa-ci.yml b/salsa-ci.yml new file mode 100644 index 00000000..00b903dc --- /dev/null +++ b/salsa-ci.yml @@ -0,0 +1,15 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml +# known not currently reproducible +reprotest: + allow_failure: true +variables: + SALSA_CI_LINTIAN_FAIL_WARNING: 1 +# clearer errors from reproducibility test + SALSA_CI_REPROTEST_ENABLE_DIFFOSCOPE: 1 +# tests are long, so run them only in build +# shorten the build logs to make room for reporting differences + SALSA_CI_REPROTEST_ARGS: "--append-build-command=-Pnocheck --vary=environment.variables+=DEB_BUILD_OPTIONS=terse" + SALSA_CI_DISABLE_AUTOPKGTEST: 1 diff --git a/source/format b/source/format new file mode 100644 index 00000000..163aaf8d --- /dev/null +++ b/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/source/lintian-overrides b/source/lintian-overrides new file mode 100644 index 00000000..e2653a01 --- /dev/null +++ b/source/lintian-overrides @@ -0,0 +1,5 @@ +# long lines in test data are not a bug +very-long-line-length-in-source-file * [pandas/tests/io/data/*] +very-long-line-length-in-source-file * [pandas/tests/io/sas/data/*] +# long lines also don't equal actually missing source +source-is-missing [pandas/tests/io/data/html/*] diff --git a/source/options b/source/options new file mode 100644 index 00000000..e558c0fc --- /dev/null +++ b/source/options @@ -0,0 +1 @@ +extend-diff-ignore="^[^/]+\.egg-info/|pandas/__version.py" diff --git a/tests/control b/tests/control new file mode 100644 index 00000000..6e4e1479 --- /dev/null +++ b/tests/control @@ -0,0 +1,115 @@ +# Check that the hard Depends are enough for import +# cd to not-the-source-directory to get the installed pandas +Test-Command: cd "$AUTOPKGTEST_TMP" && python3 -c "import pandas;a=pandas.DataFrame([[1,2],[3,4]])" +Depends: python3-pandas +Restrictions: allow-stderr + +# According to pandas/doc/source/install.rst, running the unit tests looks like: +# `py.test-3 --skip-slow --skip-network /usr/lib/python3/dist-packages/pandas/ -v -rs` +# Or simply `python3 -c "import pandas as pd; pd.test()"`, which doesn't require +# us to specify the path (pandas.__path__) in command line. +# See: pandas/util/_tester.py +Tests: unittests3 +# xml test_wrong_url fails without ca-certificates +Depends: python3-pandas, + ca-certificates, + locales-all, + python3-all, +# we don't have this version python3-blosc (>= 1.21.0~), + python3-bottleneck (>= 1.3.4~), + python3-bs4 (>= 4.11.1~), + python3-dask (>= 2023.2.0~), + python3-dateutil, + python3-fsspec (>= 2022.05.0~), + python3-html5lib (>= 1.1~), + python3-hypothesis (>= 6.46.1~), + python3-jinja2 (>= 3.1.2~), + python3-lxml (>= 4.8.0~), + python3-matplotlib (>= 3.6.1~) [!ia64 !sh4 !x32], +# architectures here are the ones on which to treat numba-related failures as RC - see also debian/control +# temporarily disabled as numba is not in testing #1033907 python3-numba (>= 0.55.2~) [amd64 i386 ppc64el], + python3-numexpr (>= 2.8.0~), + python3-numpy (>= 1:1.23.2~), + python3-odf (>= 1.4.1~), + python3-openpyxl (>= 3.0.10~), +# doesn't seem to work in this test environment python3-psycopg2 (>= 2.9.3~), + python3-py, +# doesn't seem to work in this test environment python3-pymysql (>= 1.0.2~), + python3-pyreadstat (>= 1.1.5~), + python3-pytest (>= 7.3~), + python3-pytest-asyncio (>= 0.17~), + python3-pytest-forked, + python3-pytest-localserver, + python3-pytest-xdist (>= 2.2.0~), + python3-scipy (>= 1.8.1~), + python3-setuptools (>= 51~), +# we don't have this version python3-snappy (>= 0.6.0~), + python3-sqlalchemy (>= 1.4.36~), +# python3-tables is now little-endian only, and also unavailable on some ports + python3-tables (>= 3.7.0~) [!s390x !hppa !powerpc !ppc64 !sparc64 !hurd-any !alpha], +# we don't have this version python3-tabulate (>= 0.8.10~), + python3-tk, + python3-tz (>= 2022.1~), + python3-xarray (>= 2022.03.0~), +# we don't have this version python3-xlrd (>= 2.0.1~), +# we don't have this version python3-xlsxwriter (>= 3.0.3~), + python3-zstandard (>= 0.17.0~), + tzdata-legacy, + xauth, + xvfb, + xsel +Restrictions: allow-stderr, needs-internet + +# this test does not actually fail on failure - it exists to produce a log for monitoring known issues +# (we can't use plain xfails for this, because some of these crash not just fail) +Tests: ignoredtests +# identical dependencies to above except that: +# numba is required on all architectures +# psycopg2/pymysql are included +Depends: python3-pandas, + ca-certificates, + locales-all, + python3-all, +# we don't have this version python3-blosc (>= 1.21.0~), + python3-bottleneck (>= 1.3.4~), + python3-bs4 (>= 4.11.1~), + python3-dask (>= 2023.2.0~), + python3-dateutil, + python3-fsspec (>= 2022.05.0~), + python3-html5lib (>= 1.1~), + python3-hypothesis (>= 6.46.1~), + python3-jinja2 (>= 3.1.2~), + python3-lxml (>= 4.8.0~), + python3-matplotlib (>= 3.6.1~) [!ia64 !sh4 !x32], +# temporarily disabled as numba is not in testing #1033907 python3-numba (>= 0.55.2~), + python3-numexpr (>= 2.8.0~), + python3-numpy (>= 1:1.23.2~), + python3-odf (>= 1.4.1~), + python3-openpyxl (>= 3.0.10~), + python3-psycopg2 (>= 2.9.3~), + python3-py, + python3-pymysql (>= 1.0.2~), + python3-pyreadstat (>= 1.1.5~), + python3-pytest (>= 7.3~), + python3-pytest-asyncio (>= 0.17~), + python3-pytest-forked, + python3-pytest-localserver, + python3-pytest-xdist (>= 2.2.0~), + python3-scipy (>= 1.8.1~), + python3-setuptools (>= 51~), +# we don't have this version python3-snappy (>= 0.6.0~), + python3-sqlalchemy (>= 1.4.36~), +# python3-tables is now little-endian only, and also unavailable on some ports + python3-tables (>= 3.7.0~) [!s390x !hppa !powerpc !ppc64 !sparc64 !hurd-any !alpha], +# we don't have this version python3-tabulate (>= 0.8.10~), + python3-tk, + python3-tz (>= 2022.1~), + python3-xarray (>= 2022.03.0~), +# we don't have this version python3-xlrd (>= 2.0.1~), +# we don't have this version python3-xlsxwriter (>= 3.0.3~), + python3-zstandard (>= 0.17.0~), + tzdata-legacy, + xauth, + xvfb, + xsel +Restrictions: allow-stderr, needs-internet diff --git a/tests/ignoredtests b/tests/ignoredtests new file mode 100755 index 00000000..c0116032 --- /dev/null +++ b/tests/ignoredtests @@ -0,0 +1,21 @@ +#!/bin/bash +# this intentionally doesn't actually fail (isn't set -e), as it exists to run known possibly-crashing tests to get a log of whether they still fail + +arch=$(dpkg --print-architecture) +pys="$(py3versions -s 2>/dev/null)" +sourcetestroot="$PWD/pandas/tests" + +cd "$AUTOPKGTEST_TMP" +TEST_SUCCESS=true +for py in $pys; do + echo "=== $py ===" + modpath=$($py -c 'import pandas as pd; print(pd.__path__[0])') + echo "tests that use numba (may crash on non-x86) - checked with grep -rl -e numba pandas/tests - -m not slow because there are enough to time out otherwise" + PANDAS_CI=1 LC_ALL=C.UTF-8 xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" $py -m pytest --forked --tb=long -s -v -m "not slow" --deb-data-root-dir=$sourcetestroot --confcutdir=$modpath $modpath/tests/frame/test_ufunc.py $modpath/tests/groupby/test_numba.py $modpath/tests/groupby/test_timegrouper.py $modpath/tests/groupby/transform/test_numba.py $modpath/tests/groupby/aggregate/test_numba.py $modpath/tests/util/test_numba.py $modpath/tests/window $TEST_SUBSET 2>&1 + echo "tests with a run=False xfail for hdf5 crashes - see xfail_tests_nonintel_io.patch" + PANDAS_CI=1 LC_ALL=C.UTF-8 xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" $py -m pytest --forked --runxfail --tb=long -s -v --deb-data-root-dir=$sourcetestroot --confcutdir=$modpath $modpath/tests/io/pytables/test_file_handling.py $modpath/tests/io/pytables/test_append.py $modpath/tests/io/pytables/test_store.py + echo "pymysql/psycopg2 tests, which do not work in this test environment" + PANDAS_CI=1 LC_ALL=C.UTF-8 xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" $py -m pytest --forked --tb=long -s -v --deb-data-root-dir=$sourcetestroot --confcutdir=$modpath $modpath/tests/io/test_sql.py $modpath/tests/tools/test_to_datetime.py +done +# this intentionally doesn't actually fail, as it exists to run known possibly-crashing tests to get a log of whether they still fail +true diff --git a/tests/unittests3 b/tests/unittests3 new file mode 100755 index 00000000..fbef14c3 --- /dev/null +++ b/tests/unittests3 @@ -0,0 +1,37 @@ +#!/bin/bash +set -eu +set -x + +arch=$(dpkg --print-architecture) +pys="$(py3versions -s 2>/dev/null)" +sourcetestroot="$PWD/pandas/tests" + +# Debian: Enable "slow" tests on x86 to keep the code coverage. +# Ubuntu: Disable "slow" tests on ALL architectures. +if (echo amd64 i386 | grep $arch >/dev/null) && [ "Debian" = $(dpkg-vendor --query vendor) ]; then + marker='' +else + marker='not slow' +fi +# mips/hppa may have unusual NaN behaviour +# https://en.wikipedia.org/wiki/NaN#Encoding +if (echo $arch | grep -E "mips|hppa" >/dev/null) ; then + PYTEST_WARN_IGNORE="-W ignore:invalid value encountered:RuntimeWarning" +else + PYTEST_WARN_IGNORE= +fi + +cd "$AUTOPKGTEST_TMP" +# Run in sections to avoid out-of-memory crash (#943732) +# exit code 5 means no tests in this file +# the grep -q is because trying to test __pycache__ is an error in pytest 8+, #1063959 +TEST_SUCCESS=true +for py in $pys; do + echo "=== $py ===" + modpath=$($py -c 'import pandas as pd; print(pd.__path__[0])') + for TEST_SUBSET in $modpath/tests/* ; do + echo $TEST_SUBSET | grep -q -e __pycache__ || PANDAS_CI=1 LC_ALL=C.UTF-8 xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" \ + $py -m pytest --tb=long -s -m "$marker" $PYTEST_WARN_IGNORE --deb-data-root-dir=$sourcetestroot --confcutdir=$modpath $TEST_SUBSET 2>&1 || test $? == 5 || TEST_SUCCESS=false && echo "rdjoqkol test state = $TEST_SUCCESS" + done +done +$TEST_SUCCESS diff --git a/upstream/metadata b/upstream/metadata new file mode 100644 index 00000000..5b320845 --- /dev/null +++ b/upstream/metadata @@ -0,0 +1,14 @@ +Bug-Submit: https://github.com/pydata/pandas/issues/new +Repository: https://github.com/pydata/pandas.git +Documentation: https://pandas.pydata.org/pandas-docs/stable +Bug-Database: https://github.com/pydata/pandas/issues +Contact: https://pandas.pydata.org/community.html +Reference: + Title: "pandas: a Foundational Python Library for Data Analysis and Statistics" + Eprint: https://www.scribd.com/doc/71048089/pandas-a-Foundational-Python-Library-for-Data-Analysis-and-Statistics + Author: McKinney, Wes + Booktitle: presented at PyHPC + Year: 2011 +Other-References: https://pandas.pydata.org/talks.html +Repository-Browse: https://github.com/pydata/pandas +Security-Contact: https://github.com/pydata/pandas/tree/HEAD/.github/SECURITY.md diff --git a/watch b/watch new file mode 100644 index 00000000..706c551d --- /dev/null +++ b/watch @@ -0,0 +1,3 @@ +version=4 +opts="mode=git,gitexport=all,dversionmangle=s/.dfsg[0-9]*$//,uversionmangle=s/v//;s/rc/~rc/,repacksuffix=+dfsg" \ + https://github.com/pandas-dev/pandas refs/tags/v([0-9.]+)