--- /dev/null
+The git annex repo seems to be assuming anything under a hidden directory is non-large and thus is putting it in .git instead of .git/annex
+I have even tried
+
+mkdir ...git.annex.test...
+cd ...git.annex.test...
+git init
+git annex init
+cp ../...directory.with.binary.files.small.and.large.../ . -r
+# git config annex.largefiles anything # (this seems to have no affect to the operation below)
+git annex add .
+...
+... (non-large file; adding content to git repository)
+...
+
+this only affects content under a dot-directory, is this expected?