Seed of a package of blast+
authorSteffen Moeller <moeller@debian.org>
Thu, 2 Dec 2010 17:36:34 +0000 (17:36 +0000)
committerSteffen Moeller <moeller@debian.org>
Thu, 2 Dec 2010 17:36:34 +0000 (17:36 +0000)
14 files changed:
debian/README.Debian [new file with mode: 0644]
debian/README.source [new file with mode: 0644]
debian/changelog [new file with mode: 0644]
debian/compat [new file with mode: 0644]
debian/control [new file with mode: 0644]
debian/copyright [new file with mode: 0644]
debian/docs [new file with mode: 0644]
debian/ncbi-blast-plus.cron.d.ex [new file with mode: 0644]
debian/ncbi-blast-plus.default.ex [new file with mode: 0644]
debian/ncbi-blast-plus.doc-base.EX [new file with mode: 0644]
debian/patches/series [new file with mode: 0644]
debian/rules [new file with mode: 0755]
debian/source/format [new file with mode: 0644]
debian/watch.ex [new file with mode: 0644]

diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644 (file)
index 0000000..a3cd3b3
--- /dev/null
@@ -0,0 +1,6 @@
+ncbi-blast-plus for Debian
+--------------------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- Steffen Moeller <srigirish@evolbio.mpg.de>  Thu, 02 Dec 2010 18:18:41 +0100
diff --git a/debian/README.source b/debian/README.source
new file mode 100644 (file)
index 0000000..0c50f26
--- /dev/null
@@ -0,0 +1,9 @@
+ncbi-blast-plus for Debian
+--------------------------
+
+<this file describes information about the source package, see Debian policy
+manual section 4.14. You WILL either need to modify or delete this file>
+
+
+
+
diff --git a/debian/changelog b/debian/changelog
new file mode 100644 (file)
index 0000000..6c50156
--- /dev/null
@@ -0,0 +1,5 @@
+ncbi-blast-plus (2.2.24+-1) unstable; urgency=low
+
+  * Initial release (Closes: #nnnn)  <nnnn is the bug number of your ITP>
+
+ -- Steffen Moeller <srigirish@evolbio.mpg.de>  Thu, 02 Dec 2010 18:18:41 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644 (file)
index 0000000..7f8f011
--- /dev/null
@@ -0,0 +1 @@
+7
diff --git a/debian/control b/debian/control
new file mode 100644 (file)
index 0000000..5dc165e
--- /dev/null
@@ -0,0 +1,15 @@
+Source: ncbi-blast-plus
+Section: unknown
+Priority: extra
+Maintainer: Steffen Moeller <srigirish@evolbio.mpg.de>
+Build-Depends: debhelper (>= 7.0.50~)
+Standards-Version: 3.8.4
+Homepage: <insert the upstream URL, if relevant>
+#Vcs-Git: git://git.debian.org/collab-maint/ncbi-blast-plus.git
+#Vcs-Browser: http://git.debian.org/?p=collab-maint/ncbi-blast-plus.git;a=summary
+
+Package: ncbi-blast-plus
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: <insert up to 60 chars description>
+ <insert long description, indented with spaces>
diff --git a/debian/copyright b/debian/copyright
new file mode 100644 (file)
index 0000000..47b25e3
--- /dev/null
@@ -0,0 +1,37 @@
+This work was packaged for Debian by:
+
+    Steffen Moeller <srigirish@evolbio.mpg.de> on Thu, 02 Dec 2010 18:18:41 +0100
+
+It was downloaded from:
+
+    <url://example.com>
+
+Upstream Author(s):
+
+    <put author's name and email here>
+    <likewise for another author>
+
+Copyright:
+
+    <Copyright (C) YYYY Firstname Lastname>
+    <likewise for another author>
+
+License:
+
+    <Put the license of the package here indented by 4 spaces>
+
+The Debian packaging is:
+
+    Copyright (C) 2010 Steffen Moeller <srigirish@evolbio.mpg.de>
+
+# Please chose a license for your packaging work. If the program you package
+# uses a mainstream license, using the same license is the safest choice.
+# Please avoid to pick license terms that are more restrictive than the
+# packaged work, as it may make Debian's contributions unacceptable upstream.
+# If you just want it to be GPL version 3, leave the following lines in.
+
+and is licensed under the GPL version 3,
+see "/usr/share/common-licenses/GPL-3".
+
+# Please also look if there are files or directories which have a
+# different copyright/license attached and list them here.
diff --git a/debian/docs b/debian/docs
new file mode 100644 (file)
index 0000000..e69de29
diff --git a/debian/ncbi-blast-plus.cron.d.ex b/debian/ncbi-blast-plus.cron.d.ex
new file mode 100644 (file)
index 0000000..27422e8
--- /dev/null
@@ -0,0 +1,4 @@
+#
+# Regular cron jobs for the ncbi-blast-plus package
+#
+0 4    * * *   root    [ -x /usr/bin/ncbi-blast-plus_maintenance ] && /usr/bin/ncbi-blast-plus_maintenance
diff --git a/debian/ncbi-blast-plus.default.ex b/debian/ncbi-blast-plus.default.ex
new file mode 100644 (file)
index 0000000..874bc82
--- /dev/null
@@ -0,0 +1,10 @@
+# Defaults for ncbi-blast-plus initscript
+# sourced by /etc/init.d/ncbi-blast-plus
+# installed at /etc/default/ncbi-blast-plus by the maintainer scripts
+
+#
+# This is a POSIX shell fragment
+#
+
+# Additional options that are passed to the Daemon.
+DAEMON_OPTS=""
diff --git a/debian/ncbi-blast-plus.doc-base.EX b/debian/ncbi-blast-plus.doc-base.EX
new file mode 100644 (file)
index 0000000..000d6f7
--- /dev/null
@@ -0,0 +1,20 @@
+Document: ncbi-blast-plus
+Title: Debian ncbi-blast-plus Manual
+Author: <insert document author here>
+Abstract: This manual describes what ncbi-blast-plus is
+ and how it can be used to
+ manage online manuals on Debian systems.
+Section: unknown
+
+Format: debiandoc-sgml
+Files: /usr/share/doc/ncbi-blast-plus/ncbi-blast-plus.sgml.gz
+
+Format: postscript
+Files: /usr/share/doc/ncbi-blast-plus/ncbi-blast-plus.ps.gz
+
+Format: text
+Files: /usr/share/doc/ncbi-blast-plus/ncbi-blast-plus.text.gz
+
+Format: HTML
+Index: /usr/share/doc/ncbi-blast-plus/html/index.html
+Files: /usr/share/doc/ncbi-blast-plus/html/*.html
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644 (file)
index 0000000..ee758d3
--- /dev/null
@@ -0,0 +1 @@
+root_Makefile.patch
diff --git a/debian/rules b/debian/rules
new file mode 100755 (executable)
index 0000000..bd86dc3
--- /dev/null
@@ -0,0 +1,25 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+configure: configure.stamp
+configure.stamp:
+       ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include 
+       touch $@
+
+build: build.stamp
+build.stamp: configure.stamp
+       $(MAKE)
+       touch $@
+
+#%:
+#      dh $@ 
+
+.PHONY: configure
diff --git a/debian/source/format b/debian/source/format
new file mode 100644 (file)
index 0000000..163aaf8
--- /dev/null
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch.ex b/debian/watch.ex
new file mode 100644 (file)
index 0000000..fa81ed7
--- /dev/null
@@ -0,0 +1,23 @@
+# Example watch control file for uscan
+# Rename this file to "watch" and then you can run the "uscan" command
+# to check for upstream updates and more.
+# See uscan(1) for format
+
+# Compulsory line, this is a version 3 file
+version=3
+
+# Uncomment to examine a Webpage
+# <Webpage URL> <string match>
+#http://www.example.com/downloads.php ncbi-blast-plus-(.*)\.tar\.gz
+
+# Uncomment to examine a Webserver directory
+#http://www.example.com/pub/ncbi-blast-plus-(.*)\.tar\.gz
+
+# Uncommment to examine a FTP server
+#ftp://ftp.example.com/pub/ncbi-blast-plus-(.*)\.tar\.gz debian uupdate
+
+# Uncomment to find new files on sourceforge, for devscripts >= 2.9
+# http://sf.net/ncbi-blast-plus/ncbi-blast-plus-(.*)\.tar\.gz
+
+# Uncomment to find new files on GooglePages
+# http://example.googlepages.com/foo.html ncbi-blast-plus-(.*)\.tar\.gz