--- /dev/null
+pygalmesh (0.10.6-5) unstable; urgency=medium
+
+ * fix test skip for s390x
+
+ -- Drew Parsons <dparsons@debian.org> Mon, 30 Dec 2024 19:21:18 +0100
+
+pygalmesh (0.10.6-4) unstable; urgency=medium
+
+ * skip test_from_array_with_subdomain_sizing on s390x
+ * use DEB_HOST_ARCH not DEB_BUILD_ARCH to control build config
+
+ -- Drew Parsons <dparsons@debian.org> Mon, 30 Dec 2024 10:25:15 +0100
+
+pygalmesh (0.10.6-3) unstable; urgency=medium
+
+ * Team upload.
+ * Fix ftbfs with upstream commit. (Closes: #1074381)
+ * Add DEB_BUILD_MAINT_OPTIONS to fix hardening issues.
+ * Add pybuild-plugin-pyproject on B-D.
+ * Bump Standards-Version to 4.7.0.
+ * Add Rules-Requires-Root
+
+ -- Bo YU <tsu.yubo@gmail.com> Fri, 15 Nov 2024 23:29:58 +0800
+
+pygalmesh (0.10.6-2) unstable; urgency=medium
+
+ * update debian patch test_relax_tolerance.patch to relax tolerance
+ in test_inr. Closes: #1060276.
+ * Standards-Version: 4.6.2
+
+ -- Drew Parsons <dparsons@debian.org> Wed, 17 Jan 2024 12:44:41 +0100
+
+pygalmesh (0.10.6-1) unstable; urgency=medium
+
+ * New upstream release.
+ * run debian/tests (autopkgtest) over all supported python versions
+
+ -- Drew Parsons <dparsons@debian.org> Wed, 26 Jan 2022 17:21:20 +0100
+
+pygalmesh (0.10.5-2) unstable; urgency=medium
+
+ * debian/tests skip test_rectangle on i386
+ (see https://github.com/nschloe/pygalmesh/issues/170)
+ * reinstate debian patch test_relax_tolerance.patch
+ for test_extrude on i386. Closes: #996336.
+
+ -- Drew Parsons <dparsons@debian.org> Sun, 31 Oct 2021 17:15:26 +0100
+
+pygalmesh (0.10.5-1) unstable; urgency=medium
+
+ * New upstream release.
+ - provides single pygalmesh executable
+ * update Build-Depends: python3-all-dev:any (>= 3.7)
+ * drop debian patch test_relax_tolerance.patch
+ (tolerance changes made upstream)
+ * Standards-Version: 4.6.0
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 12 Oct 2021 16:20:43 +0200
+
+pygalmesh (0.9.4-1) experimental; urgency=medium
+
+ * New upstream release.
+ * Build-Depends: python3-pybind11 (>= 2.6)
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 16 Mar 2021 11:07:53 +0100
+
+pygalmesh (0.9.3-1) experimental; urgency=medium
+
+ * New upstream release.
+ - provides better handling of tetrahedra
+ - Build-Depends: libgmp-dev, libmpfr-dev
+ * Standards-Version: 4.5.1
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 25 Feb 2021 16:50:49 +0100
+
+pygalmesh (0.9.1-2) unstable; urgency=medium
+
+ * debian patch test_relax_tolerance.patch relaxes test tolerances
+ (needed for i386 to pass tests)
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 17 Oct 2020 13:43:21 +0800
+
+pygalmesh (0.9.1-1) unstable; urgency=medium
+
+ * New upstream release.
+ * update versioned Build-Depends: python3-pybind11 (>= 2.5),
+ python3-setuptools (>= 42)
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 15 Oct 2020 21:05:40 +0800
+
+pygalmesh (0.7.2-1) unstable; urgency=medium
+
+ * New upstream release.
+ * generate manpages directly from binary commands using help2man
+ rather than markdown and pandoc.
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 26 Sep 2020 17:33:24 +0800
+
+pygalmesh (0.7.1-1) unstable; urgency=medium
+
+ * New upstream release.
+ - changes copyright licence to GPL-3
+ * debhelper compatibility level 13
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 10 Sep 2020 23:35:09 +0800
+
+pygalmesh (0.6.6-1) unstable; urgency=medium
+
+ * New upstream release.
+ - drop debian patch relax_test_tolerance.patch. inr test tolerance
+ raised upstream.
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 12 May 2020 19:28:09 +0800
+
+pygalmesh (0.6.2-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 16 Apr 2020 16:34:22 +0800
+
+pygalmesh (0.5.2-1) unstable; urgency=medium
+
+ * New upstream release.
+ - versioned Build-Depends: python3-meshio (>= 4)
+ * Update debian patch relax_test_tolerance.patch to relax upstream
+ tolerance only for ref[5]. Closes: #951864.
+
+ -- Drew Parsons <dparsons@debian.org> Mon, 24 Feb 2020 11:54:01 +0800
+
+pygalmesh (0.5.0-4) unstable; urgency=medium
+
+ * It is possible to build pygalmesh using cmake, but normally it
+ should be built using setup.py (distutils). Disambiguate between
+ the two build systems by setting PYBUILD_SYSTEM=distutils.
+ Closes: #946233.
+ * Standards-Version: 4.5.0
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 18 Feb 2020 15:50:47 +0800
+
+pygalmesh (0.5.0-3) unstable; urgency=medium
+
+ * more tolerance relaxing in relax_test_tolerance.patch.
+ Closes: #947058.
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 31 Dec 2019 09:19:05 +1100
+
+pygalmesh (0.5.0-2) unstable; urgency=medium
+
+ * debian patch relax_test_tolerance.patch relaxes tolerance in
+ test_inr.py to allow successful tests on arm64. Closes: #947058.
+ * Standards-Version: 4.4.1
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 28 Dec 2019 10:54:34 +1100
+
+pygalmesh (0.5.0-1) unstable; urgency=medium
+
+ * New upstream release.
+ - fixes build against CGAL 5. Thanks Joachim Reichel for a patch.
+ Closes: #946234.
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 07 Dec 2019 14:07:47 +0800
+
+pygalmesh (0.4.0-1) unstable; urgency=medium
+
+ * set debian/watch to track upstream git tags,
+ needed to pull in git lfs objects (mesh files)
+ * New upstream release.
+
+ -- Drew Parsons <dparsons@debian.org> Mon, 19 Aug 2019 00:42:35 +0800
+
+pygalmesh (0.3.6-2) unstable; urgency=medium
+
+ * debian/clean: delete pygalmesh-from-inr.1 and
+ pygalmesh-volume-from-surface.1, generated in
+ override_dh_auto_build. Thanks Joachim Reichel.
+ Closes: #933848, #933986.
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 06 Aug 2019 16:53:03 +0800
+
+pygalmesh (0.3.6-1) unstable; urgency=medium
+
+ * New upstream release.
+ * Standards-Version: 4.4.0
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 11 Jul 2019 10:25:00 +0800
+
+pygalmesh (0.3.5-1) unstable; urgency=medium
+
+ * New upstream release.
+ - provides utility scripts pygalmesh-from-inr and
+ pygalmesh-volume-from-surface
+
+ -- Drew Parsons <dparsons@debian.org> Sun, 07 Jul 2019 19:33:56 +0800
+
+pygalmesh (0.3.3-2) experimental; urgency=medium
+
+ * debian/tests/control: Depends: python3-requests.
+
+ -- Drew Parsons <dparsons@debian.org> Fri, 17 May 2019 15:11:08 +0800
+
+pygalmesh (0.3.3-1) experimental; urgency=medium
+
+ * New upstream release.
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 11 May 2019 16:12:20 +0800
+
+pygalmesh (0.3.1-3) experimental; urgency=medium
+
+ * skip dh_dwz and don't build dbgsym packages on arches where debug
+ symbols have been switched off (-g0)
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 04 May 2019 00:33:39 +0800
+
+pygalmesh (0.3.1-2) experimental; urgency=medium
+
+ * disable debugging symbols (replace -g flag with -g0 in CFLAGS)
+ on low memory (32 bit) arches:
+ armhf i386 mips mipsel hppa hurd-i386 kfreebsd-i386 powerpcspe x32
+ Closes: #928140.
+
+ -- Drew Parsons <dparsons@debian.org> Fri, 03 May 2019 22:40:41 +0800
+
+pygalmesh (0.3.1-1) experimental; urgency=medium
+
+ * New upstream release
+ - supports periodic meshes
+ - Build-Depends: python3-meshio
+ * Standards-Version: 4.3.0
+ * debhelper compatibility level 12
+
+ -- Drew Parsons <dparsons@debian.org> Wed, 24 Apr 2019 22:41:19 +0800
+
+pygalmesh (0.2.6-1) unstable; urgency=medium
+
+ * New upstream release.
+ - fixes meshio API used in pygalmesh tests
+ * add debian/tests (autopkgtest) to run pytest-3
+
+ -- Drew Parsons <dparsons@debian.org> Wed, 14 Nov 2018 23:10:51 +0800
+
+pygalmesh (0.2.5-1) unstable; urgency=medium
+
+ * Initial release (Closes: #910278)
+ - package Python 3 module only (Python 2 is deprecated)
+
+ -- Drew Parsons <dparsons@debian.org> Mon, 08 Oct 2018 00:49:13 +0800
--- /dev/null
+pygalmesh-from-inr.1
+pygalmesh-volume-from-surface.1
--- /dev/null
+Source: pygalmesh
+Section: python
+Priority: optional
+Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
+Uploaders: Drew Parsons <dparsons@debian.org>
+Build-Depends: debhelper-compat (= 13),
+ dh-python, python3-all-dev:any (>= 3.7), python3-setuptools (>= 42),
+ libcgal-dev,
+ libeigen3-dev,
+ libgmp-dev, libmpfr-dev,
+ python3-meshio (>= 4),
+ python3-pybind11 (>= 2.6),
+ pybuild-plugin-pyproject
+Standards-Version: 4.7.0
+Homepage: https://github.com/nschloe/pygalmesh
+Vcs-Browser: https://salsa.debian.org/science-team/pygalmesh
+Vcs-Git: https://salsa.debian.org/science-team/pygalmesh.git
+Rules-Requires-Root: no
+
+Package: python3-pygalmesh
+Architecture: any
+Depends: ${python3:Depends}, ${shlibs:Depends}, ${misc:Depends}
+Suggests: python-pygalmesh-doc
+Description: Python 3 frontend to CGAL's 3D mesh generators
+ pygalmesh makes it easy to create high-quality 3D volume and surface
+ meshes.
+ .
+ CGAL offers two different approaches for mesh generation:
+ - Meshes defined implicitly by level sets of functions.
+ - Meshes defined by a set of bounding planes.
+ .
+ pygalmesh provides a front-end to the first approach, which has the
+ following advantages and disadvantages:
+ - All boundary points are guaranteed to be in the level set within
+ any specified residual. This results in smooth curved surfaces.
+ - Sharp intersections of subdomains (e.g., in unions or
+ differences of sets) need to be specified manually (via feature edges,
+ see below), which can be tedious.
+ .
+ On the other hand, the bounding-plane approach (realized by mshr),
+ has the following properties:
+ - Smooth, curved domains are approximated by a set of bounding
+ planes, resulting in more of less visible edges.
+ - Intersections of domains can be computed automatically, so
+ domain unions etc. have sharp edges where they belong.
+ .
+ pygalmesh and mshr are therefore complementary.
+ .
+ pygalmesh also interfaces CGAL's 3D periodic mesh generation.
+ .
+ This package installs the pygalmesh module for Python 3.
+ .
+ It also provides the utility scripts pygalmesh-from-inr and
+ pygalmesh-volume-from-surface for generating volume meshes from
+ INR or surface meshes.
--- /dev/null
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pygalmesh
+Source: https://github.com/nschloe/pygalmesh
+
+Files: *
+Copyright: 2016-2020 Nico Schlömer <nico.schloemer@gmail.com>
+License: GPL-3
+ This software is released under the terms of the GNU General Public
+ Licence, Version 3.
+ .
+ On a Debian system, the full text of the GPL can be found at
+ /usr/share/common-licenses/GPL-3
--- /dev/null
+Description: Fix build issue with CGAL 6.0
+Author: Sebastien Loriot <sebastien.loriot@cgal.org>
+Origin, upstream: https://github.com/meshpro/pygalmesh/pull/214
+Bug-Debian: https://bugs.debian.org/1074381
+Last-Update: 2024-11-16
+---
+ src/CMakeLists.txt | 3 +--
+ src/generate.cpp | 2 +-
+ src/generate_from_inr.cpp | 2 +-
+ src/generate_from_off.cpp | 4 ++--
+ 4 files changed, 5 insertions(+), 6 deletions(-)
+
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -5,7 +5,6 @@
+ include_directories(${EIGEN3_INCLUDE_DIR})
+
+ FIND_PACKAGE(CGAL REQUIRED)
+-include(${CGAL_USE_FILE})
+
+ FILE(GLOB pygalmesh_SRCS "${CMAKE_CURRENT_SOURCE_DIR}/*.cpp")
+ # FILE(GLOB pygalmesh_HEADERS "${CMAKE_CURRENT_SOURCE_DIR}/*.hpp")
+@@ -13,7 +12,7 @@
+ pybind11_add_module(pygalmesh ${pygalmesh_SRCS})
+
+ # ADD_LIBRARY(pygalmesh ${pygalmesh_SRCS})
+-target_link_libraries(pygalmesh PRIVATE ${CGAL_LIBRARIES})
++target_link_libraries(pygalmesh PRIVATE CGAL::CGAL)
+
+ # https://github.com/CGAL/cgal/issues/6002
+ # find_program(iwyu_path NAMES include-what-you-use iwyu REQUIRED)
+--- a/src/generate.cpp
++++ b/src/generate.cpp
+@@ -8,7 +8,7 @@
+ #include <CGAL/Mesh_complex_3_in_triangulation_3.h>
+ #include <CGAL/Mesh_criteria_3.h>
+
+-#include <CGAL/Implicit_mesh_domain_3.h>
++#include <CGAL/Labeled_mesh_domain_3.h>
+ #include <CGAL/Mesh_domain_with_polyline_features_3.h>
+ #include <CGAL/make_mesh_3.h>
+
+--- a/src/generate_from_inr.cpp
++++ b/src/generate_from_inr.cpp
+@@ -11,7 +11,7 @@
+ #include <CGAL/Mesh_complex_3_in_triangulation_3.h>
+ #include <CGAL/Mesh_criteria_3.h>
+
+-#include <CGAL/Implicit_mesh_domain_3.h>
++#include <CGAL/Labeled_mesh_domain_3.h>
+ #include <CGAL/Mesh_domain_with_polyline_features_3.h>
+ #include <CGAL/make_mesh_3.h>
+
+--- a/src/generate_from_off.cpp
++++ b/src/generate_from_off.cpp
+@@ -18,7 +18,7 @@
+
+ #include <CGAL/version_macros.h>
+
+-#if CGAL_VERSION_MAJOR >= 5 && CGAL_VERSION_MINOR < 3
++#if (CGAL_VERSION_MAJOR == 5 && CGAL_VERSION_MINOR < 3)
+ #include <CGAL/IO/OFF_reader.h>
+ #endif
+
+@@ -78,7 +78,7 @@
+
+ if(
+ !input ||
+-#if CGAL_VERSION_MAJOR >= 5 && CGAL_VERSION_MINOR >= 3
++#if (CGAL_VERSION_MAJOR >= 5 && CGAL_VERSION_MINOR >= 3) || (CGAL_VERSION_MAJOR >= 6)
+ !CGAL::IO::read_OFF(input, points, polygons) ||
+ #else
+ !CGAL::read_OFF(input, points, polygons) ||
--- /dev/null
+test_relax_tolerance.patch
+build-with-CGAL-6.0.patch
--- /dev/null
+Index: pygalmesh/tests/test_volume_mesh.py
+===================================================================
+--- pygalmesh.orig/tests/test_volume_mesh.py 2024-01-17 12:41:12.952337404 +0100
++++ pygalmesh/tests/test_volume_mesh.py 2024-01-17 12:41:12.948337521 +0100
+@@ -483,7 +483,7 @@
+ assert abs(min(mesh.points[:, 1]) + 0.3) < tol
+ # Relax tolerance for debian, see <https://github.com/nschloe/pygalmesh/pull/47>
+ assert abs(max(mesh.points[:, 2]) - 1.0) < 1.1e-3
+- assert abs(min(mesh.points[:, 2]) + 0.0) < tol
++ assert abs(min(mesh.points[:, 2]) + 0.0) < 1.1e-3
+
+ vol = sum(helpers.compute_volumes(mesh.points, mesh.get_cells_type("tetra")))
+ assert abs(vol - 0.4) < tol
+Index: pygalmesh/tests/test_inr.py
+===================================================================
+--- pygalmesh.orig/tests/test_inr.py 2024-01-17 12:41:12.952337404 +0100
++++ pygalmesh/tests/test_inr.py 2024-01-17 12:41:29.287844693 +0100
+@@ -35,7 +35,7 @@
+ (min(mesh.points[:, 2]), -3.98639357e-03),
+ ]
+ for val, ref in vals_refs:
+- assert abs(val - ref) < 1.0e-3 * (1.0 + abs(ref)), f"{val:.8e} != {ref:.8e}"
++ assert abs(val - ref) < 1.1e-3 * (1.0 + abs(ref)), f"{val:.8e} != {ref:.8e}"
+
+ vol = sum(helpers.compute_volumes(mesh.points, mesh.get_cells_type("tetra")))
+ ref = 6.95558790e02
--- /dev/null
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.48.5.
+.TH PYGALMESH "1" "October 2021" "pygalmesh 0.10.5" "User Commands"
+.SH NAME
+pygalmesh \- create high-quality meshes with ease
+.SH DESCRIPTION
+usage: pygalmesh [\-h] [\-\-version]
+.IP
+{from\-inr,remesh\-surface,volume\-from\-surface} ...
+.PP
+pygalmesh command\-line tools
+.SS "optional arguments:"
+.TP
+\fB\-h\fR, \fB\-\-help\fR
+show this help message and exit
+.TP
+\fB\-\-version\fR, \fB\-v\fR
+display version information
+.SS "subcommands:"
+.IP
+{from\-inr,remesh\-surface,volume\-from\-surface}
+.TP
+from\-inr
+Create volume mesh from INR voxel files
+.TP
+remesh\-surface
+Remesh surface mesh
+.TP
+volume\-from\-surface
+Generate volume mesh from surface mesh
+.PP
+pygalmesh is a Python frontend to CGAL's 2D and 3D mesh generation capabilities.
+pygalmesh makes it easy to create high-quality 2D, 3D volume meshes,
+periodic volume meshes, and surface meshes.
+.PP
+pygalmesh 0.10.5 [Python 3.9.7, CGAL 5.3]
+.PP
+Copyright (c) 2016-2021, Nico Schlömer <nico.schloemer@gmail.com>
--- /dev/null
+debian/pygalmesh.1
--- /dev/null
+#!/usr/bin/make -f
+# See debhelper(7) (uncomment to enable)
+# output every command that modifies files on the build system.
+#export DH_VERBOSE = 1
+
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+
+export PYBUILD_NAME=pygalmesh
+
+export PYBUILD_SYSTEM=distutils
+
+DEB_HOST_ARCH ?= $(shell dpkg-architecture -qDEB_HOST_ARCH)
+
+DPKG_EXPORT_BUILDFLAGS = 1
+include /usr/share/dpkg/buildflags.mk
+
+# some arches (mostly 32 bit) don't provide enough memory to build with debug symbols
+ARCH_NO_DEBUG_SYMBOLS := armhf i386 mips mipsel hppa hurd-i386 kfreebsd-i386 powerpcspe x32
+ifneq ($(findstring $(DEB_HOST_ARCH),$(ARCH_NO_DEBUG_SYMBOLS)),)
+# disable debugging symbols (replace -g with -g0 in build flags) on weak arches
+ CFLAGS := $(shell dpkg-buildflags --get CFLAGS | sed 's/-g /-g0 /' )
+endif
+
+ifeq ($(DEB_HOST_ARCH),s390x)
+ export PYBUILD_TEST_ARGS = -k "not test_from_array_with_subdomain_sizing"
+endif
+
+%:
+ dh $@ --with python3 --buildsystem=pybuild
+
+# debug symbols (-g) have been switched off (-g0) in CFLAGS for some arches, so no point building dbgsym packages
+override_dh_strip:
+ case " $(ARCH_NO_DEBUG_SYMBOLS) " in \
+ *\ $(DEB_HOST_ARCH)\ *) dh_strip --no-automatic-dbgsym;; \
+ *) dh_strip;; \
+ esac
+
+override_dh_dwz:
+ case " $(ARCH_NO_DEBUG_SYMBOLS) " in \
+ *\ $(DEB_HOST_ARCH)\ *) echo "skipping dh_dwz since debug symbols (-g) have been switched off (-g0) for $(DEB_HOST_ARCH)";; \
+ *) dh_dwz;; \
+ esac
--- /dev/null
+3.0 (quilt)
--- /dev/null
+extend-diff-ignore = "^[^/]*[.]egg-info/"
--- /dev/null
+Tests: test-pygalmesh
+Depends: @, @builddeps@,
+ python3-all,
+ python3-pytest,
+ python3-requests
--- /dev/null
+DEB_HOST_ARCH=$(dpkg-architecture -qDEB_HOST_ARCH)
+
+if [ "x${DEB_HOST_ARCH}" = "xi386" ]; then
+ # test_rectangle started failing on i386,
+ # see https://github.com/nschloe/pygalmesh/issues/170
+ TEST_OPTIONS="not test_rectangle"
+elif [ "x${DEB_HOST_ARCH}" = "xs390x" ]; then
+ TEST_OPTIONS="not test_from_array_with_subdomain_sizing"
+fi
+
+for pyver in $(py3versions -sv); do
+ python$pyver -m pytest -k "${TEST_OPTIONS}"
+done
--- /dev/null
+version=4
+opts="mode=git, gitmode=full, pgpmode=none" \
+https://github.com/nschloe/pygalmesh.git \
+refs/tags/v([\d\.]+) debian uupdate
projects / pygalmesh.git / commitdiff