# DRAFT package.

diff --git a/debian/compat b/debian/compat
index 7f8f011eb73d6043d2e6db9d2c101195ae2801f2..45a4fb75db864000d01701c0f7a51864bd4daabf 100644 (file)
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-7
+8

diff --git a/debian/control b/debian/control
index f0e2757ccd316df8e43a534e9fa3d89b09bc674c..5a912b274dc80637446ea005bfb729504c4fd45c 100644 (file)
--- a/debian/control
+++ b/debian/control
@@ -1,15 +1,16 @@
 Source: pysam
-Section: unknown
-Priority: extra
+Section: science
+Priority: optional
 Maintainer: Charles Plessy <plessy@debian.org>
-Build-Depends: debhelper (>= 7.0.50~)
+Build-Depends: debhelper (>= 8), cython
 Standards-Version: 3.9.1
-Homepage: <insert the upstream URL, if relevant>
-#Vcs-Git: git://git.debian.org/collab-maint/pysam.git
-#Vcs-Browser: http://git.debian.org/?p=collab-maint/pysam.git;a=summary
+Homepage: http://code.google.com/p/pysam/
+Vcs-Git: git://git.debian.org/debian-med/pysam.git
+Vcs-Browser: http://git.debian.org/?p=debian-med/pysam.git
 
-Package: pysam
+Package: python-pysam
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: <insert up to 60 chars description>
- <insert long description, indented with spaces>
+Depends: ${shlibs:Depends}, ${misc:Depends}, python-pyrex
+Description: interface for the SAM/BAM sequence alignment and mapping format
+ Pysam is a python module for reading and manipulating Samfiles. It's a
+ lightweight wrapper of the samtools C-API. 

diff --git a/debian/copyright b/debian/copyright
index 45a8eae8b672e14e6527c3d7b200f786236666c4..ecea70109705ce940163d860ec87973e029672bf 100644 (file)
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,37 +1,28 @@
-This work was packaged for Debian by:
-
-    Charles Plessy <plessy@debian.org> on Thu, 13 Jan 2011 19:32:07 +0900
-
-It was downloaded from:
-
-    <url://example.com>
-
-Upstream Author(s):
-
-    <put author's name and email here>
-    <likewise for another author>
-
-Copyright:
-
-    <Copyright (C) YYYY Firstname Lastname>
-    <likewise for another author>
-
-License:
-
-    <Put the license of the package here indented by 4 spaces>
-
-The Debian packaging is:
-
-    Copyright (C) 2011 Charles Plessy <plessy@debian.org>
-
-# Please choose a license for your packaging work. If the program you package
-# uses a mainstream license, using the same license is the safest choice.
-# Please avoid to pick license terms that are more restrictive than the
-# packaged work, as it may make Debian's contributions unacceptable upstream.
-# If you just want it to be GPL version 3, leave the following lines in.
-
-and is licensed under the GPL version 3,
-see "/usr/share/common-licenses/GPL-3".
-
-# Please also look if there are files or directories which have a
-# different copyright/license attached and list them here.
+Name: Pysam
+Source: http://pysam.googlecode.com/files/pysam-0.3.1.tar.gz
+Copyright: © 2008-2009 Genome Research Ltd.
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.
+
+
+=====
+DRAFT
+=====
+
+The copyright of samtools and tabix must be documented as well !

diff --git a/debian/rules b/debian/rules
index b760bee7f4c367c013d228df52f8332ae6744cf2..4067ba016ac6d9878a1ab4264c7ee8c161b23e32 100755 (executable)
--- a/debian/rules
+++ b/debian/rules
@@ -1,13 +1,4 @@
 #!/usr/bin/make -f
-# -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
-
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
 
 %:
        dh $@ 

diff --git a/debian/watch b/debian/watch
index 6523a7af0513407f2483c54f8ce304d9bc060a2c..e48efe1a6707bcca144ef9a4f11d4e26bb571109 100644 (file)
--- a/debian/watch
+++ b/debian/watch
@@ -1,23 +1,4 @@
-# Example watch control file for uscan
-# Rename this file to "watch" and then you can run the "uscan" command
-# to check for upstream updates and more.
-# See uscan(1) for format
-
-# Compulsory line, this is a version 3 file
 version=3
 
-# Uncomment to examine a Webpage
-# <Webpage URL> <string match>
-#http://www.example.com/downloads.php pysam-(.*)\.tar\.gz
-
-# Uncomment to examine a Webserver directory
-#http://www.example.com/pub/pysam-(.*)\.tar\.gz
-
-# Uncommment to examine a FTP server
-#ftp://ftp.example.com/pub/pysam-(.*)\.tar\.gz debian uupdate
-
-# Uncomment to find new files on sourceforge, for devscripts >= 2.9
-# http://sf.net/pysam/pysam-(.*)\.tar\.gz
-
-# Uncomment to find new files on GooglePages
-# http://example.googlepages.com/foo.html pysam-(.*)\.tar\.gz
+http://code.google.com/p/pysam/downloads/list \
+       http://pysam.googlecode.com/files/pysam-(.*).tar.gz