Drop patch accepted upstream

diff --git a/debian/patches/series b/debian/patches/series
index d9e809a205d6a3e42f948ea0866fd91eb1f62bfd..43ee38595c16e3f1c81ef0d1514da8ca9eb787f0 100644 (file)
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,4 +1,3 @@
 skip_test_remote.patch
 clean_less
 skip-test-on-32-bit.patch
-typos.patch

diff --git a/debian/patches/typos.patch b/debian/patches/typos.patch
deleted file mode 100644 (file)
index 5201085..0000000
--- a/debian/patches/typos.patch
+++ /dev/null
@@ -1,50 +0,0 @@
-Description: fix typos caught by lintian.
-Author: Étienne Mollier <emollier@debian.org>
-Forwarded: https://github.com/pysam-developers/pysam/pull/1198
-Last-Update: 2023-06-23
----
-This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
---- python-pysam.orig/samtools/bam_ampliconclip.c
-+++ python-pysam/samtools/bam_ampliconclip.c
-@@ -1014,7 +1014,7 @@
- 
-     if (param.tol < 0) {
-         fprintf(stderr, "[ampliconclip] warning: invalid tolerance of %d,"
--                        " reseting tolerance to default of 5.\n", param.tol);
-+                        " resetting tolerance to default of 5.\n", param.tol);
-         param.tol = 5;
-     }
- 
---- python-pysam.orig/samtools/bam_ampliconclip.c.pysam.c
-+++ python-pysam/samtools/bam_ampliconclip.c.pysam.c
-@@ -1016,7 +1016,7 @@
- 
-     if (param.tol < 0) {
-         fprintf(samtools_stderr, "[ampliconclip] warning: invalid tolerance of %d,"
--                        " reseting tolerance to default of 5.\n", param.tol);
-+                        " resetting tolerance to default of 5.\n", param.tol);
-         param.tol = 5;
-     }
- 
---- python-pysam.orig/samtools/bamshuf.c
-+++ python-pysam/samtools/bamshuf.c
-@@ -537,7 +537,7 @@
-             "      -l INT   Compression level [%d]\n" // DEF_CLEVEL
-             "      -n INT   Number of temporary files [%d]\n" // n_files
-             "      -T PREFIX\n"
--            "               Write tempory files to PREFIX.nnnn.bam\n"
-+            "               Write temporary files to PREFIX.nnnn.bam\n"
-             "      --no-PG  do not add a PG line\n",
-             reads_store, DEF_CLEVEL, n_files);
- 
---- python-pysam.orig/samtools/bamshuf.c.pysam.c
-+++ python-pysam/samtools/bamshuf.c.pysam.c
-@@ -539,7 +539,7 @@
-             "      -l INT   Compression level [%d]\n" // DEF_CLEVEL
-             "      -n INT   Number of temporary files [%d]\n" // n_files
-             "      -T PREFIX\n"
--            "               Write tempory files to PREFIX.nnnn.bam\n"
-+            "               Write temporary files to PREFIX.nnnn.bam\n"
-             "      --no-PG  do not add a PG line\n",
-             reads_store, DEF_CLEVEL, n_files);
-