Added a comment: this just happened to me as well

diff --git a/doc/bugs/three_character_directories_created/comment_3_776e0a9b938d8b260a5111594b442536._comment b/doc/bugs/three_character_directories_created/comment_3_776e0a9b938d8b260a5111594b442536._comment
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+[[!comment format=mdwn
+ username="https://www.google.com/accounts/o8/id?id=AItOawn9JRcJ_69McoLFe5-dvTMdfS9rJpGy6JI"
+ nickname="Warren"
+ subject="this just happened to me as well"
+ date="2013-03-29T23:28:05Z"
+ content="""
+I was trying to undo some changes from another bare repo, and then all of a sudden the three letter directories popped up.  I think the way I did this was to hard reset the master and git-annex branches to the same commit.  I take it that was the wrong thing to do?  I take it the git-annex and master branch should never be merged?
+"""]]