Fix lintian overrides

diff --git a/debian/changelog b/debian/changelog
index a69df4361b59b5fd2a55fc06e8034d58eaf5dbf2..4a6951f9507c7af0da152ada5fcd37102a5eb949 100644 (file)
--- a/debian/changelog
+++ b/debian/changelog
@@ -7,6 +7,7 @@ python-pysam (0.10.0+ds-1) UNRELEASED; urgency=medium
   [ Andreas Tille ]
   * d/rules: Remove redundant get-orig-source target
   * hardening=+all
+  * Fix lintian overrides
 
  -- Afif Elghraoui <afif@debian.org>  Mon, 23 Jan 2017 19:13:47 -0800
 

diff --git a/debian/python-pysam-tests.lintian-overrides b/debian/python-pysam-tests.lintian-overrides
index 112ff5baa5e0501932070c29b17af667c1c6d9cf..9df6f846476ef20235f388a789095febd78a325d 100644 (file)
--- a/debian/python-pysam-tests.lintian-overrides
+++ b/debian/python-pysam-tests.lintian-overrides
@@ -1,6 +1,5 @@
-# This is an upstream-provided file. It's not created by the build process,
-# so the timestamp will not change.
-package-contains-timestamped-gzip usr/share/doc/python-pysam/tests/pysam_data/ex1.sam.gz
 # These files are intentionally empty to be used for testing
 zero-byte-file-in-doc-directory usr/share/doc/python-pysam/tests/cbcf_data/example_empty.vcf
 zero-byte-file-in-doc-directory usr/share/doc/python-pysam/tests/tabix_data/empty.bed.gz
+# The duplicate is used for testing and needs to be there
+duplicated-compressed-file usr/share/doc/python-pysam/tests/pysam_data/ex1.fa.gz

diff --git a/debian/python-pysam.lintian-overrides b/debian/python-pysam.lintian-overrides
index 76af28fb8b9afdbeb88edce1a2c0cddfe54b02f7..785680d49307e26019c52f65293f3ff20fe520ad 100644 (file)
--- a/debian/python-pysam.lintian-overrides
+++ b/debian/python-pysam.lintian-overrides
@@ -1,6 +1,4 @@
-# These are apparently false-positives.
+# These are apparently false-positives
 # Inspection of the build logs shows that these are indeed compiled with
 # -D_FORTIFY_SOURCE=2
-hardening-no-fortify-functions usr/lib/python2.7/dist-packages/pysam/calignmentfile.x86_64-linux-gnu.so
-hardening-no-fortify-functions usr/lib/python2.7/dist-packages/pysam/ctabix.x86_64-linux-gnu.so
-hardening-no-fortify-functions usr/lib/python2.7/dist-packages/pysam/ctabixproxies.x86_64-linux-gnu.so
+hardening-no-fortify-functions usr/lib/python2.7/dist-packages/pysam/lib*.so

diff --git a/debian/python3-pysam.lintian-overrides b/debian/python3-pysam.lintian-overrides
index d2a1cdd2753b30a8aaca22efba22e11695b99585..288316d902d1957bd2a6982b68b301f33f768e10 100644 (file)
--- a/debian/python3-pysam.lintian-overrides
+++ b/debian/python3-pysam.lintian-overrides
@@ -1,8 +1,4 @@
 # These are apparently false-positives
 # Inspection of the build logs shows that these are indeed compiled with
 # -D_FORTIFY_SOURCE=2
-hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/TabProxies.cpython-3*
-hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/calignmentfile.cpython-3*
-hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/calignedsegment.cpython-3*
-hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/ctabix.cpython-3*
-hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/ctabixproxies.cpython-3*
+hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/lib*.so