--- python-pysam.orig/tests/AlignmentFile_test.py
+++ python-pysam/tests/AlignmentFile_test.py
-@@ -504,17 +504,6 @@
+@@ -497,17 +497,6 @@
"tmp_ex2.sam",
"rb", "wh")
def testCRAM2BAM(self):
# ignore header (md5 sum)
self.checkEcho("ex2.cram",
-@@ -1640,6 +1629,7 @@
+@@ -1633,6 +1622,7 @@
reference_filename = os.path.join(BAM_DATADIR, 'ex1.fa')
'''test remote access.
--- python-pysam.orig/tests/tabix_test.py
+++ python-pysam/tests/tabix_test.py
-@@ -1017,6 +1017,7 @@
+@@ -1013,6 +1013,7 @@
globals()[n] = type(n, (TestVCFFromVariantFile,), dict(filename=vcf_file,))
class TestRemoteFileHTTP(unittest.TestCase):
url = "http://genserv.anat.ox.ac.uk/downloads/pysam/test/example.gtf.gz"
-@@ -1056,25 +1057,28 @@
+@@ -1052,25 +1053,28 @@
self.assertEqual(list(self.local_file.header), [])