fix test failure with htslib 1.20.

This data file contains invalid data, which is diagnosed by
improvements in bam_parse_basemod2() in HTSlib 1.20. Updating these
base modification data files to the versions in htslib and hts-specs
corrects the problem.
Author: John Marshall
Origin: upstream, https://github.com/pysam-developers/pysam/issues/1291#issuecomment-2131146211
Bug: https://github.com/pysam-developers/pysam/issues/1291
Reviewed-by: Étienne Mollier <emollier@debian.org>
Last-Update: 2024-05-29

Gbp-Pq: Name htslib-1.20.patch

diff --git a/tests/pysam_data/MM-chebi.sam b/tests/pysam_data/MM-chebi.sam
index 62920ecc1fdaed7e5e723ef287b7267aa6227a50..28774d5a35ad2bd2103a961334a06985a2327641 100644 (file)
--- a/tests/pysam_data/MM-chebi.sam
+++ b/tests/pysam_data/MM-chebi.sam
@@ -1,2 +1,2 @@
 @CO    Separate m, h and N modifications
-*      0       *       0       0       *       *       0       0       AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA    *       Mm:Z:C+m,2,2,1,4,1;C+76792,6,7;N+n,15;  Ml:B:C,102,128,153,179,204,161,187,212,169
+*      0       *       0       0       *       *       0       0       AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA    *       Mm:Z:C+m,2,2,1,4,1;C+76792,6,7;N+n,15;  Ml:B:C,102,128,153,179,204,161,187,212