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+[[!comment format=mdwn
+ username="sam.nastase@2b4a9b3e5094dab41e0a4de0b808a2697a3e9860"
+ nickname="sam.nastase"
+ avatar="http://cdn.libravatar.org/avatar/55c74b521bcb7322069f35bf655f81e0"
+ subject="comment 9"
+ date="2020-03-09T18:47:06Z"
+ content="""
+Hmm yeah I may have previously screwed something up with the conda env, because it didn't have git-annex either, which I just manually installed via conda and is now present. This also seems to have installed a new git in the conda env (see conda list below), but for whatever reason, invoking git still reaches outside the conda env (I got the server admin to upgrade to 2.9):
+
+    (datalad) scotty:/jukebox/hasson/snastase/narratives $ git --version
+    git version 2.9.3
+
+I'm still hitting a datalad error in trying to save the dataset. 
+
+    (datalad) scotty:/jukebox/hasson/snastase/narratives $ datalad save -m \"Added new 'notthefall' subjects\"
+    CommandError: 'git-annex add -c annex.dotfiles=true --json --json-error-messages -- CHANGES README dataset
+    _description.json derivatives/fmriprep derivatives/freesurfer derivatives/logs participants.tsv sub-002/su
+    b-002_scans.tsv...
+
+and on and on listing many files, then:
+
+    sub-315/sub-315_scans.json sub-315/sub-315_scans.tsv' failed with exitcode 1 under /mnt/bucket/labs/hasson/snastase/narratives
+    git-annex: Repository /mnt/bucket/labs/hasson/snastase/narratives is at unsupported version 7. Automatic upgrade exception! derivatives/mriqc: getSymbolicLinkStatus: does not exist (No such file or directory)
+
+I did a `datalad remove` on this derivatives/mriqc directory a few days ago, not sure why that's tripping up.
+
+---
+
+    # packages in environment at /usr/people/snastase/.conda/envs/datalad:
+    #
+    # Name                    Version                   Build  Channel
+    _libgcc_mutex             0.1                        main  
+    annexremote               1.3.1                    pypi_0    pypi
+    appdirs                   1.4.3                    pypi_0    pypi
+    boto                      2.49.0                   pypi_0    pypi
+    ca-certificates           2019.11.28           hecc5488_0    conda-forge
+    certifi                   2019.11.28               py37_0    conda-forge
+    cffi                      1.14.0                   pypi_0    pypi
+    chardet                   3.0.4                    pypi_0    pypi
+    cryptography              2.8                      pypi_0    pypi
+    curl                      7.68.0               hf8cf82a_0    conda-forge
+    datalad                   0.12.2                   pypi_0    pypi
+    dbus                      1.13.6               he372182_0    conda-forge
+    deprecated                1.2.7                    pypi_0    pypi
+    expat                     2.2.9                he1b5a44_2    conda-forge
+    fasteners                 0.15                     pypi_0    pypi
+    future                    0.18.2                   pypi_0    pypi
+    gettext                   0.19.8.1          hc5be6a0_1002    conda-forge
+    git                       2.23.0          pl526hacde149_0  
+    git-annex                 8.20200226         hfc01302_101    conda-forge
+    gitdb                     4.0.2                    pypi_0    pypi
+    gitpython                 3.1.0                    pypi_0    pypi
+    glib                      2.58.3          py37h6f030ca_1002    conda-forge
+    gmp                       6.2.0                he1b5a44_2    conda-forge
+    humanize                  2.0.0                    pypi_0    pypi
+    idna                      2.9                      pypi_0    pypi
+    importlib-metadata        1.5.0                    pypi_0    pypi
+    iso8601                   0.1.12                   pypi_0    pypi
+    jeepney                   0.4.3                    pypi_0    pypi
+    jsmin                     2.2.2                    pypi_0    pypi
+    keyring                   21.1.1                   pypi_0    pypi
+    keyrings-alt              3.4.0                    pypi_0    pypi
+    krb5                      1.16.4               h173b8e3_0  
+    ld_impl_linux-64          2.33.1               h53a641e_7  
+    libcurl                   7.68.0               hda55be3_0    conda-forge
+    libedit                   3.1.20181209         hc058e9b_0  
+    libffi                    3.2.1                hd88cf55_4  
+    libgcc-ng                 9.1.0                hdf63c60_0  
+    libiconv                  1.15              h516909a_1005    conda-forge
+    libmagic                  5.36                 h516909a_1    conda-forge
+    libssh2                   1.8.2                h22169c7_2    conda-forge
+    libstdcxx-ng              9.1.0                hdf63c60_0  
+    lsof                      4.89                          0    conda-forge
+    monotonic                 1.5                      pypi_0    pypi
+    msgpack                   1.0.0                    pypi_0    pypi
+    ncurses                   6.2                  he6710b0_0  
+    openssh                   7.9p1                h0fa992c_1    conda-forge
+    openssl                   1.1.1d               h516909a_0    conda-forge
+    patool                    1.12                     pypi_0    pypi
+    pcre                      8.44                 he1b5a44_0    conda-forge
+    perl                      5.26.2            h516909a_1006    conda-forge
+    pip                       20.0.2                   py37_1  
+    popt                      1.16              h299ea2f_2002    conda-forge
+    pycparser                 2.20                     pypi_0    pypi
+    pygithub                  1.46                     pypi_0    pypi
+    pyjwt                     1.7.1                    pypi_0    pypi
+    python                    3.7.6                h0371630_2  
+    readline                  7.0                  h7b6447c_5  
+    requests                  2.23.0                   pypi_0    pypi
+    rsync                     3.1.3             hed695b0_1002    conda-forge
+    secretstorage             3.1.2                    pypi_0    pypi
+    setuptools                45.2.0                   py37_0  
+    simplejson                3.17.0                   pypi_0    pypi
+    six                       1.14.0                   pypi_0    pypi
+    smmap                     3.0.1                    pypi_0    pypi
+    sqlite                    3.31.1               h7b6447c_0  
+    tk                        8.6.8                hbc83047_0  
+    tqdm                      4.43.0                   pypi_0    pypi
+    urllib3                   1.25.8                   pypi_0    pypi
+    wheel                     0.34.2                   py37_0  
+    whoosh                    2.7.4                    pypi_0    pypi
+    wrapt                     1.12.0                   pypi_0    pypi
+    xz                        5.2.4                h14c3975_4  
+    zipp                      3.1.0                    pypi_0    pypi
+    zlib                      1.2.11               h7b6447c_3  
+
+"""]]