Files: c++/*/util/regexp/*
Copyright: 1997-2009 University of Cambridge
-2008-2009 Google Inc
+ 2008-2009 Google Inc
License: BSD
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
-
2. The origin of this software must not be misrepresented; you must
not claim that you wrote the original software. If you use this
software in a product, an acknowledgment in the product
documentation would be appreciated but is not required.
-
3. Altered source versions must be plainly marked as such, and must
not be misrepresented as being the original software.
-
4. The name of the author may not be used to endorse or promote
products derived from this software without specific prior written
permission.
-
+ .
THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
-
2. The origin of this software must not be misrepresented; you must
not claim that you wrote the original software. If you use this
software in a product, an acknowledgment in the product
documentation would be appreciated but is not required.
-
3. Altered source versions must be plainly marked as such, and must
not be misrepresented as being the original software.
-
4. The name of the author may not be used to endorse or promote
products derived from this software without specific prior written
permission.
-
+ .
THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
execute, and transmit the Software, and to prepare derivative works of the
Software, and to permit third-parties to whom the Software is furnished to
do so, all subject to the following:
-
+ .
The copyright notices in the Software and this entire statement, including
the above license grant, this restriction and the following disclaimer,
must be included in all copies of the Software, in whole or in part, and
all derivative works of the Software, unless such copies or derivative
works are solely in the form of machine-executable object code generated by
a source language processor.
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+ .
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
subject to the following conditions:
The above copyright notice and this permission notice shall be included
in all copies or substantial portions of the Software.
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+ .
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
License: PD
PUBLIC DOMAIN NOTICE
National Center for Biotechnology Information
-
+ .
This software/database is a "United States Government Work" under the
terms of the United States Copyright Act. It was written as part of
the author's official duties as a United States Government employee and
thus cannot be copyrighted. This software/database is freely available
to the public for use. The National Library of Medicine and the U.S.
Government have not placed any restriction on its use or reproduction.
-
+ .
Although all reasonable efforts have been taken to ensure the accuracy
and reliability of the software and data, the NLM and the U.S.
Government do not and cannot warrant the performance or results that
Government disclaim all warranties, express or implied, including
warranties of performance, merchantability or fitness for any particular
purpose.
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+ .
Please cite the author in any work or product based on this material.
Files: debian/*
.
On Debian systems, the complete text of the GNU General
Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
-
--- /dev/null
+--- ncbi-blast+-2.2.25.orig/c++/src/app/blast/update_blastdb.pl
++++ ncbi-blast+-2.2.25/c++/src/app/blast/update_blastdb.pl
+@@ -104,7 +104,7 @@
+ or die "Failed to login to " . NCBI_FTP . ": $!\n";
+ $ftp->cwd(BLAST_DB_DIR);
+ $ftp->binary();
+- print STDERR "Connected to NCBI\n" if $opt_verbose;
++ print STDOUT "Connected to NCBI\n" if $opt_verbose;
+ return $ftp;
+ }
+
+@@ -170,14 +170,14 @@
+ if ($opt_verbose and &is_multivolume_db($file)) {
+ my $db_name = &extract_db_name($file);
+ my $nvol = &get_num_volumes($db_name, @_);
+- print STDERR "Downloading $db_name (" . $nvol . " volumes) ...\n";
++ print STDOUT "Downloading $db_name (" . $nvol . " volumes) ...\n";
+ }
+
+ download_file:
+ if ($opt_force_download or
+ not -f $file or
+ ((stat($file))->mtime < $ftp->mdtm($file))) {
+- print STDERR "Downloading $file... " if $opt_verbose;
++ print STDOUT "Downloading $file... " if $opt_verbose;
+ $ftp->get($file);
+ if ($opt_check_md5) {
+ unless ($ftp->get("$file.md5")) {
+@@ -199,10 +199,10 @@
+ }
+ }
+ }
+- print STDERR "done.\n" if $opt_verbose;
++ print STDOUT "done.\n" if $opt_verbose;
+ $retval = 1 if ($retval == 0);
+ } else {
+- print STDERR "$file is up to date.\n" if $opt_verbose;
++ print STDOUT "$file is up to date.\n" if $opt_verbose;
+ }
+ }
+ return $retval;
projects / ncbi-blast+.git / commitdiff