refresh older patches

diff --git a/debian/patches/adding-include-hts-dirs b/debian/patches/adding-include-hts-dirs
index ff5dd49f538621a0c168413a8c0fc10008a0ce26..129fa828e4adc8a0b7a9526562f2379dd7c22ed7 100644 (file)
--- a/debian/patches/adding-include-hts-dirs
+++ b/debian/patches/adding-include-hts-dirs
@@ -1,7 +1,7 @@
 Description: Added the include dirs
---- a/setup.py
-+++ b/setup.py
-@@ -92,6 +92,7 @@
+--- python-pysam.orig/setup.py
++++ python-pysam/setup.py
+@@ -103,6 +103,7 @@
      chtslib_sources = []
      shared_htslib_sources = htslib_sources
      htslib_library_dirs = HTSLIB_LIBRARY_DIR

diff --git a/debian/patches/change-htslib-statement-to-link-to-debian b/debian/patches/change-htslib-statement-to-link-to-debian
index bd77a1684c43a8a003a7695dab962d0ba0ef2684..045e3027cff7aaf0be4fe5a638a7e1dcd7a8c47e 100644 (file)
--- a/debian/patches/change-htslib-statement-to-link-to-debian
+++ b/debian/patches/change-htslib-statement-to-link-to-debian
@@ -1,6 +1,6 @@
 Description: Trying to bind to debian htslib
---- a/setup.py
-+++ b/setup.py
+--- python-pysam.orig/setup.py
++++ python-pysam/setup.py
 @@ -30,7 +30,7 @@
  #         pysam.
  # external: use shared libhts.so compiled outside of
@@ -10,7 +10,7 @@ Description: Trying to bind to debian htslib
  HTSLIB_LIBRARY_DIR = os.environ.get('HTSLIB_LIBRARY_DIR', None)
  HTSLIB_INCLUDE_DIR = os.environ.get('HTSLIB_INCLUDE_DIR', None)
  
-@@ -87,6 +87,12 @@
+@@ -98,6 +98,12 @@
      htslib_library_dirs = ['pysam']
      htslib_include_dirs = ['htslib']
      htslib_libraries = ['chtslib']