htslib-1.20.patch: delete: applied upstream.

diff --git a/debian/patches/htslib-1.20.patch b/debian/patches/htslib-1.20.patch
deleted file mode 100644 (file)
index 63a2389..0000000
--- a/debian/patches/htslib-1.20.patch
+++ /dev/null
@@ -1,19 +0,0 @@
-Description: fix test failure with htslib 1.20.
- This data file contains invalid data, which is diagnosed by
- improvements in bam_parse_basemod2() in HTSlib 1.20. Updating these
- base modification data files to the versions in htslib and hts-specs
- corrects the problem.
-
-Author: John Marshall
-Origin: upstream, https://github.com/pysam-developers/pysam/issues/1291#issuecomment-2131146211
-Bug: https://github.com/pysam-developers/pysam/issues/1291
-Reviewed-by: Étienne Mollier <emollier@debian.org>
-Last-Update: 2024-05-29
----
-This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
---- python-pysam.orig/tests/pysam_data/MM-chebi.sam
-+++ python-pysam/tests/pysam_data/MM-chebi.sam
-@@ -1,2 +1,2 @@
- @CO   Separate m, h and N modifications
--*     0       *       0       0       *       *       0       0       AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA    *       Mm:Z:C+m,2,2,1,4,1;C+76792,6,7;N+n,15;  Ml:B:C,102,128,153,179,204,161,187,212,169
-+*     0       *       0       0       *       *       0       0       AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA    *       Mm:Z:C+m,2,2,1,4,1;C+76792,6,7;N+n,15;  Ml:B:C,102,128,153,179,204,161,187,212

diff --git a/debian/patches/series b/debian/patches/series
index 468debd6006d8bac40a2e4fed517504970b61647..43ee38595c16e3f1c81ef0d1514da8ca9eb787f0 100644 (file)
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,4 +1,3 @@
 skip_test_remote.patch
 clean_less
 skip-test-on-32-bit.patch
-htslib-1.20.patch