--- /dev/null
+pygalmesh (0.9.1-2) unstable; urgency=medium
+
+ * debian patch test_relax_tolerance.patch relaxes test tolerances
+ (needed for i386 to pass tests)
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 17 Oct 2020 13:43:21 +0800
+
+pygalmesh (0.9.1-1) unstable; urgency=medium
+
+ * New upstream release.
+ * update versioned Build-Depends: python3-pybind11 (>= 2.5),
+ python3-setuptools (>= 42)
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 15 Oct 2020 21:05:40 +0800
+
+pygalmesh (0.7.2-1) unstable; urgency=medium
+
+ * New upstream release.
+ * generate manpages directly from binary commands using help2man
+ rather than markdown and pandoc.
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 26 Sep 2020 17:33:24 +0800
+
+pygalmesh (0.7.1-1) unstable; urgency=medium
+
+ * New upstream release.
+ - changes copyright licence to GPL-3
+ * debhelper compatibility level 13
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 10 Sep 2020 23:35:09 +0800
+
+pygalmesh (0.6.6-1) unstable; urgency=medium
+
+ * New upstream release.
+ - drop debian patch relax_test_tolerance.patch. inr test tolerance
+ raised upstream.
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 12 May 2020 19:28:09 +0800
+
+pygalmesh (0.6.2-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 16 Apr 2020 16:34:22 +0800
+
+pygalmesh (0.5.2-1) unstable; urgency=medium
+
+ * New upstream release.
+ - versioned Build-Depends: python3-meshio (>= 4)
+ * Update debian patch relax_test_tolerance.patch to relax upstream
+ tolerance only for ref[5]. Closes: #951864.
+
+ -- Drew Parsons <dparsons@debian.org> Mon, 24 Feb 2020 11:54:01 +0800
+
+pygalmesh (0.5.0-4) unstable; urgency=medium
+
+ * It is possible to build pygalmesh using cmake, but normally it
+ should be built using setup.py (distutils). Disambiguate between
+ the two build systems by setting PYBUILD_SYSTEM=distutils.
+ Closes: #946233.
+ * Standards-Version: 4.5.0
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 18 Feb 2020 15:50:47 +0800
+
+pygalmesh (0.5.0-3) unstable; urgency=medium
+
+ * more tolerance relaxing in relax_test_tolerance.patch.
+ Closes: #947058.
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 31 Dec 2019 09:19:05 +1100
+
+pygalmesh (0.5.0-2) unstable; urgency=medium
+
+ * debian patch relax_test_tolerance.patch relaxes tolerance in
+ test_inr.py to allow successful tests on arm64. Closes: #947058.
+ * Standards-Version: 4.4.1
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 28 Dec 2019 10:54:34 +1100
+
+pygalmesh (0.5.0-1) unstable; urgency=medium
+
+ * New upstream release.
+ - fixes build against CGAL 5. Thanks Joachim Reichel for a patch.
+ Closes: #946234.
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 07 Dec 2019 14:07:47 +0800
+
+pygalmesh (0.4.0-1) unstable; urgency=medium
+
+ * set debian/watch to track upstream git tags,
+ needed to pull in git lfs objects (mesh files)
+ * New upstream release.
+
+ -- Drew Parsons <dparsons@debian.org> Mon, 19 Aug 2019 00:42:35 +0800
+
+pygalmesh (0.3.6-2) unstable; urgency=medium
+
+ * debian/clean: delete pygalmesh-from-inr.1 and
+ pygalmesh-volume-from-surface.1, generated in
+ override_dh_auto_build. Thanks Joachim Reichel.
+ Closes: #933848, #933986.
+
+ -- Drew Parsons <dparsons@debian.org> Tue, 06 Aug 2019 16:53:03 +0800
+
+pygalmesh (0.3.6-1) unstable; urgency=medium
+
+ * New upstream release.
+ * Standards-Version: 4.4.0
+
+ -- Drew Parsons <dparsons@debian.org> Thu, 11 Jul 2019 10:25:00 +0800
+
+pygalmesh (0.3.5-1) unstable; urgency=medium
+
+ * New upstream release.
+ - provides utility scripts pygalmesh-from-inr and
+ pygalmesh-volume-from-surface
+
+ -- Drew Parsons <dparsons@debian.org> Sun, 07 Jul 2019 19:33:56 +0800
+
+pygalmesh (0.3.3-2) experimental; urgency=medium
+
+ * debian/tests/control: Depends: python3-requests.
+
+ -- Drew Parsons <dparsons@debian.org> Fri, 17 May 2019 15:11:08 +0800
+
+pygalmesh (0.3.3-1) experimental; urgency=medium
+
+ * New upstream release.
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 11 May 2019 16:12:20 +0800
+
+pygalmesh (0.3.1-3) experimental; urgency=medium
+
+ * skip dh_dwz and don't build dbgsym packages on arches where debug
+ symbols have been switched off (-g0)
+
+ -- Drew Parsons <dparsons@debian.org> Sat, 04 May 2019 00:33:39 +0800
+
+pygalmesh (0.3.1-2) experimental; urgency=medium
+
+ * disable debugging symbols (replace -g flag with -g0 in CFLAGS)
+ on low memory (32 bit) arches:
+ armhf i386 mips mipsel hppa hurd-i386 kfreebsd-i386 powerpcspe x32
+ Closes: #928140.
+
+ -- Drew Parsons <dparsons@debian.org> Fri, 03 May 2019 22:40:41 +0800
+
+pygalmesh (0.3.1-1) experimental; urgency=medium
+
+ * New upstream release
+ - supports periodic meshes
+ - Build-Depends: python3-meshio
+ * Standards-Version: 4.3.0
+ * debhelper compatibility level 12
+
+ -- Drew Parsons <dparsons@debian.org> Wed, 24 Apr 2019 22:41:19 +0800
+
+pygalmesh (0.2.6-1) unstable; urgency=medium
+
+ * New upstream release.
+ - fixes meshio API used in pygalmesh tests
+ * add debian/tests (autopkgtest) to run pytest-3
+
+ -- Drew Parsons <dparsons@debian.org> Wed, 14 Nov 2018 23:10:51 +0800
+
+pygalmesh (0.2.5-1) unstable; urgency=medium
+
+ * Initial release (Closes: #910278)
+ - package Python 3 module only (Python 2 is deprecated)
+
+ -- Drew Parsons <dparsons@debian.org> Mon, 08 Oct 2018 00:49:13 +0800
--- /dev/null
+pygalmesh-from-inr.1
+pygalmesh-volume-from-surface.1
--- /dev/null
+Source: pygalmesh
+Section: python
+Priority: optional
+Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
+Uploaders: Drew Parsons <dparsons@debian.org>
+Build-Depends: debhelper-compat (= 13),
+ dh-python, python3-all-dev, python3-setuptools (>= 42),
+ libcgal-dev,
+ libeigen3-dev,
+ python3-meshio (>= 4),
+ python3-pybind11 (>= 2.5)
+Standards-Version: 4.5.0
+Homepage: https://github.com/nschloe/pygalmesh
+Vcs-Browser: https://salsa.debian.org/science-team/pygalmesh
+Vcs-Git: https://salsa.debian.org/science-team/pygalmesh.git
+
+Package: python3-pygalmesh
+Architecture: any
+Depends: ${python3:Depends}, ${shlibs:Depends}, ${misc:Depends}
+Suggests: python-pygalmesh-doc
+Description: Python 3 frontend to CGAL's 3D mesh generators
+ pygalmesh makes it easy to create high-quality 3D volume and surface
+ meshes.
+ .
+ CGAL offers two different approaches for mesh generation:
+ - Meshes defined implicitly by level sets of functions.
+ - Meshes defined by a set of bounding planes.
+ .
+ pygalmesh provides a front-end to the first approach, which has the
+ following advantages and disadvantages:
+ - All boundary points are guaranteed to be in the level set within
+ any specified residual. This results in smooth curved surfaces.
+ - Sharp intersections of subdomains (e.g., in unions or
+ differences of sets) need to be specified manually (via feature edges,
+ see below), which can be tedious.
+ .
+ On the other hand, the bounding-plane approach (realized by mshr),
+ has the following properties:
+ - Smooth, curved domains are approximated by a set of bounding
+ planes, resulting in more of less visible edges.
+ - Intersections of domains can be computed automatically, so
+ domain unions etc. have sharp edges where they belong.
+ .
+ pygalmesh and mshr are therefore complementary.
+ .
+ pygalmesh also interfaces CGAL's 3D periodic mesh generation.
+ .
+ This package installs the pygalmesh module for Python 3.
+ .
+ It also provides the utility scripts pygalmesh-from-inr and
+ pygalmesh-volume-from-surface for generating volume meshes from
+ INR or surface meshes.
--- /dev/null
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pygalmesh
+Source: https://github.com/nschloe/pygalmesh
+
+Files: *
+Copyright: 2016-2020 Nico Schlömer <nico.schloemer@gmail.com>
+License: GPL-3
+ This software is released under the terms of the GNU General Public
+ Licence, Version 3.
+ .
+ On a Debian system, the full text of the GPL can be found at
+ /usr/share/common-licenses/GPL-3
--- /dev/null
+test_relax_tolerance.patch
--- /dev/null
+Index: pygalmesh/test/test_volume_mesh.py
+===================================================================
+--- pygalmesh.orig/test/test_volume_mesh.py 2020-10-15 18:54:16.117466694 +0800
++++ pygalmesh/test/test_volume_mesh.py 2020-10-17 13:18:06.588548310 +0800
+@@ -476,7 +476,7 @@
+ verbose=False,
+ )
+
+- tol = 1.0e-3
++ tol = 1.1e-3
+ assert abs(max(mesh.points[:, 0]) - 0.5) < tol
+ assert abs(min(mesh.points[:, 0]) + 0.5) < tol
+ assert abs(max(mesh.points[:, 1]) - 0.8) < tol
+Index: pygalmesh/test/test_inr.py
+===================================================================
+--- pygalmesh.orig/test/test_inr.py 2020-10-15 18:54:16.117466694 +0800
++++ pygalmesh/test/test_inr.py 2020-10-17 13:19:06.672108537 +0800
+@@ -32,7 +32,7 @@
+ assert abs(max(mesh.points[:, 1]) - ref[2]) < tol * ref[2]
+ assert abs(min(mesh.points[:, 1]) - ref[3]) < tol * ref[3]
+ assert abs(max(mesh.points[:, 2]) - ref[4]) < tol * ref[4]
+- tol = 3.0e-2
++ tol = 5.0e-2
+ assert abs(min(mesh.points[:, 2]) - ref[5]) < tol * ref[5]
+
+ vol = sum(helpers.compute_volumes(mesh.points, mesh.get_cells_type("tetra")))
--- /dev/null
+.\" This file was adapted from help2man 1.47.16 output.
+.TH pygalmesh\-from\-inr "1" "September 2020" "PYGALMESH" "PYGALMESH"
+.SH NAME
+pygalmesh\-from\-inr \- manual page for pygalmesh 0.7.1 [Python 3.8.6, CGAL 5.1]
+.SH DESCRIPTION
+usage: pygalmesh\-from\-inr [\-h] [\-\-lloyd LLOYD] [\-\-odt] [\-\-perturb] [\-\-exude]
+.TP
+[\-\-edge\-size EDGE_SIZE] [\-\-facet\-angle FACET_ANGLE]
+[\-\-facet\-size FACET_SIZE]
+[\-\-facet\-distance FACET_DISTANCE]
+[\-\-cell\-radius\-edge\-ratio CELL_RADIUS_EDGE_RATIO]
+[\-\-cell\-size CELL_SIZE] [\-\-quiet] [\-\-version]
+infile outfile
+.PP
+Generate volume mesh from INR voxel file.
+.SS "positional arguments:"
+.TP
+infile
+input INR file
+.TP
+outfile
+output mesh file
+.SS "optional arguments:"
+.TP
+\fB\-h\fR, \fB\-\-help\fR
+show this help message and exit
+.TP
+\fB\-\-lloyd\fR LLOYD, \fB\-l\fR LLOYD
+Lloyd smoothing (default: false)
+.TP
+\fB\-\-odt\fR, \fB\-o\fR
+ODT smoothing (default: false)
+.TP
+\fB\-\-perturb\fR, \fB\-p\fR
+perturb (default: false)
+.TP
+\fB\-\-exude\fR, \fB\-x\fR
+exude (default: false)
+.TP
+\fB\-\-edge\-size\fR EDGE_SIZE, \fB\-e\fR EDGE_SIZE
+edge size (default: 0.0)
+.TP
+\fB\-\-facet\-angle\fR FACET_ANGLE, \fB\-a\fR FACET_ANGLE
+facet angle (default: 0.0)
+.TP
+\fB\-\-facet\-size\fR FACET_SIZE, \fB\-s\fR FACET_SIZE
+facet size (default: 0.0)
+.TP
+\fB\-\-facet\-distance\fR FACET_DISTANCE, \fB\-d\fR FACET_DISTANCE
+facet distance (default: 0.0)
+.TP
+\fB\-\-cell\-radius\-edge\-ratio\fR CELL_RADIUS_EDGE_RATIO, \fB\-r\fR CELL_RADIUS_EDGE_RATIO
+cell radius/edge ratio (default: 0.0)
+.TP
+\fB\-\-cell\-size\fR CELL_SIZE, \fB\-c\fR CELL_SIZE
+cell size (default: 0.0)
+.TP
+\fB\-\-quiet\fR, \fB\-q\fR
+quiet mode (default: False)
+.TP
+\fB\-\-version\fR, \fB\-v\fR
+show program's version number and exit
+.SH COPYRIGHT
+Copyright \(co 2016\-2020, Nico Schlömer <nico.schloemer@gmail.com>
--- /dev/null
+.\" This file was adapted from help2man 1.47.16 output.
+.TH pygalmesh\-remesh\-surface "1" "September 2020" "PYGALMESH" "PYGALMESH"
+.SH NAME
+pygalmesh\-remesh\-surface \- manual page for pygalmesh 0.7.1 [Python 3.8.6, CGAL 5.1]
+.SH DESCRIPTION
+usage: pygalmesh\-remesh\-surface [\-h] [\-\-edge\-size EDGE_SIZE]
+.TP
+[\-\-facet\-angle FACET_ANGLE]
+[\-\-facet\-size FACET_SIZE]
+[\-\-facet\-distance FACET_DISTANCE] [\-\-quiet]
+[\-\-version]
+infile outfile
+.PP
+Remesh surface mesh.
+.SS "positional arguments:"
+.TP
+infile
+input mesh file
+.TP
+outfile
+output mesh file
+.SS "optional arguments:"
+.TP
+\fB\-h\fR, \fB\-\-help\fR
+show this help message and exit
+.TP
+\fB\-\-edge\-size\fR EDGE_SIZE, \fB\-e\fR EDGE_SIZE
+edge size (default: 0.0)
+.TP
+\fB\-\-facet\-angle\fR FACET_ANGLE, \fB\-a\fR FACET_ANGLE
+facet angle (default: 0.0)
+.TP
+\fB\-\-facet\-size\fR FACET_SIZE, \fB\-s\fR FACET_SIZE
+facet size (default: 0.0)
+.TP
+\fB\-\-facet\-distance\fR FACET_DISTANCE, \fB\-d\fR FACET_DISTANCE
+facet distance (default: 0.0)
+.TP
+\fB\-\-quiet\fR, \fB\-q\fR
+quiet mode (default: False)
+.TP
+\fB\-\-version\fR, \fB\-v\fR
+show program's version number and exit
+.SH COPYRIGHT
+Copyright \(co 2016\-2020, Nico Schl??mer <nico.schloemer@gmail.com>
--- /dev/null
+.\" This file was adapted from help2man 1.47.16 output.
+.TH pygalmesh\-volume\-from\-surface "1" "September 2020" "PYGALMESH" "PYGALMESH"
+.SH NAME
+pygalmesh\-volume\-from\-surface \- manual page for pygalmesh 0.7.1 [Python 3.8.6, CGAL 5.1]
+.SH DESCRIPTION
+usage: pygalmesh\-volume\-from\-surface [\-h] [\-\-lloyd LLOYD] [\-\-odt] [\-\-perturb]
+.TP
+[\-\-exude] [\-\-edge\-size EDGE_SIZE]
+[\-\-facet\-angle FACET_ANGLE]
+[\-\-facet\-size FACET_SIZE]
+[\-\-facet\-distance FACET_DISTANCE]
+[\-\-cell\-radius\-edge\-ratio CELL_RADIUS_EDGE_RATIO]
+[\-\-reorient] [\-\-cell\-size CELL_SIZE]
+[\-\-quiet] [\-\-version]
+infile outfile
+.PP
+Generate volume mesh from surface mesh.
+.SS "positional arguments:"
+.TP
+infile
+input mesh file
+.TP
+outfile
+output mesh file
+.SS "optional arguments:"
+.TP
+\fB\-h\fR, \fB\-\-help\fR
+show this help message and exit
+.TP
+\fB\-\-lloyd\fR LLOYD, \fB\-l\fR LLOYD
+Lloyd smoothing (default: false)
+.TP
+\fB\-\-odt\fR, \fB\-o\fR
+ODT smoothing (default: false)
+.TP
+\fB\-\-perturb\fR, \fB\-p\fR
+perturb (default: false)
+.TP
+\fB\-\-exude\fR, \fB\-x\fR
+exude (default: false)
+.TP
+\fB\-\-edge\-size\fR EDGE_SIZE, \fB\-e\fR EDGE_SIZE
+edge size (default: 0.0)
+.TP
+\fB\-\-facet\-angle\fR FACET_ANGLE, \fB\-a\fR FACET_ANGLE
+facet angle (default: 0.0)
+.TP
+\fB\-\-facet\-size\fR FACET_SIZE, \fB\-s\fR FACET_SIZE
+facet size (default: 0.0)
+.TP
+\fB\-\-facet\-distance\fR FACET_DISTANCE, \fB\-d\fR FACET_DISTANCE
+facet distance (default: 0.0)
+.TP
+\fB\-\-cell\-radius\-edge\-ratio\fR CELL_RADIUS_EDGE_RATIO, \fB\-r\fR CELL_RADIUS_EDGE_RATIO
+cell radius/edge ratio (default: 0.0)
+.TP
+\fB\-\-reorient\fR, \fB\-t\fR
+automatically fix face orientation (default: False)
+.TP
+\fB\-\-cell\-size\fR CELL_SIZE, \fB\-c\fR CELL_SIZE
+cell size (default: 0.0)
+.TP
+\fB\-\-quiet\fR, \fB\-q\fR
+quiet mode (default: False)
+.TP
+\fB\-\-version\fR, \fB\-v\fR
+show program's version number and exit
+.SH COPYRIGHT
+Copyright \(co 2016\-2020, Nico Schlömer <nico.schloemer@gmail.com>
--- /dev/null
+debian/pygalmesh-from-inr.1
+debian/pygalmesh-volume-from-surface.1
+debian/pygalmesh-remesh-surface.1
\ No newline at end of file
--- /dev/null
+#!/usr/bin/make -f
+# See debhelper(7) (uncomment to enable)
+# output every command that modifies files on the build system.
+#export DH_VERBOSE = 1
+
+export PYBUILD_NAME=pygalmesh
+
+export PYBUILD_SYSTEM=distutils
+
+DEB_BUILD_ARCH ?= $(shell dpkg-architecture -qDEB_BUILD_ARCH)
+
+DPKG_EXPORT_BUILDFLAGS = 1
+include /usr/share/dpkg/buildflags.mk
+
+# some arches (mostly 32 bit) don't provide enough memory to build with debug symbols
+ARCH_NO_DEBUG_SYMBOLS := armhf i386 mips mipsel hppa hurd-i386 kfreebsd-i386 powerpcspe x32
+ifneq ($(findstring $(DEB_BUILD_ARCH),$(ARCH_NO_DEBUG_SYMBOLS)),)
+# disable debugging symbols (replace -g with -g0 in build flags) on weak arches
+ CFLAGS := $(shell dpkg-buildflags --get CFLAGS | sed 's/-g /-g0 /' )
+endif
+
+%:
+ dh $@ --with python3 --buildsystem=pybuild
+
+# debug symbols (-g) have been switched off (-g0) in CFLAGS for some arches, so no point building dbgsym packages
+override_dh_strip:
+ case " $(ARCH_NO_DEBUG_SYMBOLS) " in \
+ *\ $(DEB_HOST_ARCH)\ *) dh_strip --no-automatic-dbgsym;; \
+ *) dh_strip;; \
+ esac
+
+override_dh_dwz:
+ case " $(ARCH_NO_DEBUG_SYMBOLS) " in \
+ *\ $(DEB_HOST_ARCH)\ *) echo "skipping dh_dwz since debug symbols (-g) have been switched off (-g0) for $(DEB_HOST_ARCH)";; \
+ *) dh_dwz;; \
+ esac
--- /dev/null
+3.0 (quilt)
--- /dev/null
+extend-diff-ignore = "^[^/]*[.]egg-info/"
--- /dev/null
+Test-Command: pytest-3
+Depends: @, @builddeps@,
+ python3-pytest,
+ python3-requests
--- /dev/null
+version=4
+opts="mode=git, gitmode=full, pgpmode=none" \
+https://github.com/nschloe/pygalmesh.git \
+refs/tags/v([\d\.]+) debian uupdate