--- /dev/null
--- /dev/null
++mpgrafic for Debian
++-------------------
++
++ * The --help option has an extra comment to help the user find
++ example files in /usr/share/doc/mpgrafic/examples.
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Tue, 27 Dec 2016
--- /dev/null
--- /dev/null
++mpgrafic (0.3.10-1) unstable; urgency=low
++
++ * Portability: Bypass fftw2/openmpi fortran-to-C
++ interfacing bug for s390x architecture by adding
++ fortran-to-C wrappers to directly call the fftw2 C function
++ called by src/mpgrafic.f90. This does not solve
++ Debian bug #851918 - openmpi and fftw2
++ have preprocessor macros MPI_COMM_F2C and FFTW_MPI_COMM_F2C,
++ respectively, which are supposed to handle this
++ cleanly, but at least on s390x, do not. However, version 0.3.10
++ should solve the bug from mpgrafic's point of view.
++ (Closes: #851923)
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Sun, 29 Jan 2017 00:33:07 +0100
++
++mpgrafic (0.3.9-1) unstable; urgency=low
++
++ * portability: lower precision printed float mppower.f90;
++ partial code tidying based on strict compiler warnings;
++ iseed, seeds -> c_long -> up to 4e9 cores can run with different seeds
++ (if MaxParallelism is increased)
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Mon, 23 Jan 2017 00:15:32 +0100
++
++mpgrafic (0.3.8-1) unstable; urgency=low
++
++ * v0.3.8 portability: reproducible lower precision printed floats;
++ iso_C_binding; avoid implementation-dependent integer sizes;
++ avoid implementation-dependent fortran kind values
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Sun, 22 Jan 2017 03:32:46 +0100
++
++mpgrafic (0.3.7.8-1) unstable; urgency=low
++
++ * v0.3.7.7 regression test written but forgot to include it
++ * v0.3.7.8 regression test - precision requirements, 'kind' portability,
++ debian/rules - more diagnostic info
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Fri, 20 Jan 2017 14:24:00 +0100
++
++mpgrafic (0.3.7.6-2) unstable; urgency=low
++
++ * debian/control vcs-* s/bitbucket/anonscm.debian/g ; metadata +bitbucket
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Thu, 19 Jan 2017 14:53:29 +0100
++
++mpgrafic (0.3.7.6-1) UNRELEASED; urgency=low
++
++ * New upstream release
++ * v0.3.7.6 - correct shell error so that regression test logs output
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Thu, 19 Jan 2017 12:25:06 +0100
++
++mpgrafic (0.3.7.5-1) unstable; urgency=low
++
++ * New upstream release
++ * v0.3.7.5 - revert allow-run-as-root changes;
++ drop foreign and 1.4 automake options;
++ downgrade debian status of regression test - log output but
++ continue the build, since failure is not (yet) evidence of a bug
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Wed, 18 Jan 2017 20:30:22 +0100
++
++mpgrafic (0.3.7.4-1) unstable; urgency=low
++
++ * New upstream release
++ * v0.3.7.1 - configure.ac: prioritise mpifort over deprecated mpif90
++ * v0.3.7.2 - avoid mpirun running as root if possible
++ * v0.3.7.4 - allow running make check as root if openmpi@debian
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Mon, 16 Jan 2017 23:18:27 +0100
++
++mpgrafic (0.3.7-1) unstable; urgency=low
++
++ * New upstream release
++ * v0.3.5 - regression test - fast full run should match v0.3.4 output
++ * v0.3.6 - minor configuration file simplifications
++ * v0.3.6.[1234] - regression test portability
++ * v0.3.7 - matches 0.3.6.4
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Sun, 15 Jan 2017 02:06:54 +0100
++
++mpgrafic (0.3.4-1) unstable; urgency=low
++
++ * Minor upstream and debian changes to better satisfy debian standards
++ * Upstream replacement of use of obsolete pause command
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Thu, 05 Jan 2017 23:47:21 +0100
++
++mpgrafic (0.3.2.1-1) unstable; urgency=low
++
++ * Initial release (Closes: #849427)
++
++ -- Boud Roukema <boud-debian@cosmo.torun.pl> Tue, 27 Dec 2016 04:08:41 +0100
--- /dev/null
--- /dev/null
++9
--- /dev/null
--- /dev/null
++Source: mpgrafic
++Section: science
++Priority: optional
++Maintainer: Debian Astro Team <debian-astro-maintainers@lists.alioth.debian.org>
++Uploaders: Boud Roukema <boud-debian@cosmo.torun.pl>
++Build-Depends: debhelper (>= 9),
++ autotools-dev,
++ chrpath,
++ fftw-dev (>= 2.1.5),
++ libgsl-dev (>= 2.3),
++ gfortran,
++ mpi-default-dev,
++ mpi-default-bin,
++ perl
++Standards-Version: 3.9.8
++Homepage: http://www2.iap.fr/users/pichon/mpgrafic.html
++Vcs-Git: https://anonscm.debian.org/git/debian-astro/packages/mpgrafic.git
++Vcs-Browser: https://anonscm.debian.org/git/debian-astro/packages/mpgrafic.git
++
++Package: mpgrafic
++Architecture: any
++Depends: ${shlibs:Depends}, ${misc:Depends}, mpi-default-bin
++Recommends: gnudatalanguage
++Description: MPI version of N-body initial conditions grafic package
++ mpgrafic produces initial conditions files for N-body simulations of
++ cosmological large-scale structure formation. It is a free-licensed,
++ MPI-parallelised, rewritten version of Ed Bertschinger's grafic-1
++ program, producing output files in the grafic format. It includes
++ options for an Eisenstein and Hu baryonic wiggles power spectrum, for
++ using a low-resolution map for large-scale modes in the spirit of
++ grafic-2, and together with constrfield, can be used for generating
++ constrained initial conditions. Details are given in Prunet et al
++ (2008) http://cdsads.u-strasbg.fr/abs/2008ApJS..178..179P.
--- /dev/null
--- /dev/null
++Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
++Upstream-Name: mpgrafic
++Upstream-Contact: Boud Roukema (boud cosmo.torun.pl)
++Source: https://broukema@bitbucket.org/broukema/mpgrafic.git
++
++Files: *
++Copyright: 2008-2016, Simon Prunet (prunet iap.fr)
++ 2008-2016, Christophe Pichon
++ 2016, Boud Roukema (boud-debian cosmo.torun.pl)
++License: GPL-2+
++ This program is free software; you can redistribute it
++ and/or modify it under the terms of the GNU General Public
++ License as published by the Free Software Foundation; either
++ version 2 of the License, or (at your option) any later
++ version.
++ .
++ This program is distributed in the hope that it will be
++ useful, but WITHOUT ANY WARRANTY; without even the implied
++ warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
++ PURPOSE. See the GNU General Public License for more
++ details.
++ .
++ You should have received a copy of the GNU General Public
++ License along with this package; if not, write to the Free
++ Software Foundation, Inc., 51 Franklin St, Fifth Floor,
++ Boston, MA 02110-1301 USA
++ .
++ On Debian systems, the full text of the GNU General Public
++ License version 2 can be found in the file
++ `/usr/share/common-licenses/GPL-2'.
--- /dev/null
--- /dev/null
++AUTHORS
++NEWS
++README
++TODO
--- /dev/null
--- /dev/null
++Input.stdin
++Output.stdout
++gdl
++gdl/powerspec.pro
++gdl/read_grafic.pro
++gdl/read_white.pro
++gdl/write_grafic.pro
++idl
--- /dev/null
--- /dev/null
++mpgrafic.1
--- /dev/null
--- /dev/null
++Description: Add an extra comment to the --help option so that the
++ user can more easily find example input/output files in
++ /usr/share/doc/mpgrafic/examples/. This is valid for debian, but not
++ for upstream in general.
++Forwarded: not-needed
++Author: Boud Roukema <boud-debian@cosmo.torun.pl>
++--- a/src/mpgrafic.f90
+++++ b/src/mpgrafic.f90
++@@ -131,6 +131,8 @@
++ write(*,'(a)')'Most recent source code:'
++ write(*,'(a)')'git clone https://broukema@bitbucket.org/broukema/mpgrafic.git'
++ write(*,'(a)')''
+++ write(*,'(a)')'Example input/output files: see /usr/share/doc/mpgrafic/examples/'
+++ write(*,'(a)')''
++ write(*,'(a)')' -?, --help Give this help list'
++ write(*,'(a)')' --np=INTEGER Number of particles per dimension'
++ write(*,'(a)')' --usage Give a short usage message'
--- /dev/null
--- /dev/null
++Description: Force the code regression test to fail by modifying
++ the random seed; this should normally not be included in debian/patches/series.
++ Use `quilt import <filename>' and later `quilt delete <filename>'
++ to temporarily apply this patch; `info quilt' for more info.
++Forwarded: not-needed
++Author: Boud Roukema <boud-debian@cosmo.torun.pl>
++--- a/Input.stdin
+++++ b/Input.stdin
++@@ -12,7 +12,7 @@
++
++
++ 1
++-1234
+++97531
++ white-outfile.dat
++ 0
++ noisefile_dummy.dat
--- /dev/null
--- /dev/null
++01-find-debian-example-files.patch
--- /dev/null
--- /dev/null
++#!/usr/bin/make -f
++
++# Recommendations in https://wiki.debian.org/Hardening, motivated by lintian warnings.
++export DEB_BUILD_MAINT_OPTIONS = hardening=+all
++DPKG_EXPORT_BUILDFLAGS = 1
++include /usr/share/dpkg/buildflags.mk
++
++# To run the first test program in `make check', mpirun is called.
++# This may fail if run as root, e.g. during automated building in
++# a chroot gaol. So for debian builds, running mpirun - on a single
++# processor - is allowed.
++export MPI_ALLOW_RUN_AS_ROOT = --allow-run-as-root
++
++%:
++ dh $@ --with autotools-dev
++
++# https://lintian.debian.org/tags/binary-or-shlib-defines-rpath.html
++# https://wiki.debian.org/RpathIssue
++# TODO: Where is r(un)path inserted in upstream? [not obvious]
++override_dh_install:
++ chrpath -d $(CURDIR)/debian/mpgrafic/usr/bin/mpgrafic
++ dh_install
++
++# 2017-01-17: debian/0.3.7.5-1: Data on failures of the test script
++# regression-0.3.7.sh on various architectures is needed in order to
++# make both the source code and the test reproducible. This override
++# is intended to be temporary only, while obtaining data on failures
++# from the log files of builds.
++override_dh_auto_test:
++ # since v0.3.7.8: log a diagnostic, and then return a fail if
++ # dh_auto_test failed
++ if dh_auto_test ; then \
++ printf "+++regression test diagnostic+++\n"; \
++ grep ARCH_DEFAULT_MPI_IMPL /usr/share/mpi-default-dev/debian_defaults; \
++ printf "diff:\n"; \
++ diff -u Output.stdout.np32 Output.stdout.np32.tmp; \
++ printf "+++/regression test diagnostic+++\n"; else \
++ printf "+++regression test diagnostic+++\n"; \
++ grep ARCH_DEFAULT_MPI_IMPL /usr/share/mpi-default-dev/debian_defaults; \
++ printf "diff:\n"; \
++ diff -u Output.stdout.np32 Output.stdout.np32.tmp; \
++ uname -a; \
++ printf "Processors on this machine:\n"; \
++ grep processor /proc/cpuinfo; \
++ printf "+++/regression test diagnostic+++\n"; \
++ false ; fi
--- /dev/null
--- /dev/null
++3.0 (quilt)
--- /dev/null
--- /dev/null
++extend-diff-ignore = "(^|/)(config\.(sub|guess)|Makefile|src/.*\.mod|src/Makefile\.in|ic_.*[bxyz]|[pw].*\.dat|stamp-h1|test-suite\.log|Output.*\.tmp.*|reg.*sh\.[lt][or][gs])$"
--- /dev/null
--- /dev/null
++ASCL-Id: 1304.014
++Name: mpgrafic
++Contact: boud-debian cosmo.torun.pl
++Repository: git@bitbucket.org:broukema/mpgrafic.git
++Repository-Browse: https://bitbucket.org/broukema/mpgrafic
++Bug-Database: https://bitbucket.org/broukema/mpgrafic/issues
++Reference:
++ Author: Prunet, S. and Pichon, C. and Aubert, D. and Pogosyan, D. and Teyssier, R. and Gottloeber, S.
++ Title: Initial Conditions For Large Cosmological Simulations
++ Journal: Astrophysical Journal Supplement Series
++ Year: 2008
++ Volume: 178
++ Pages: 179-188
++ DOI: 10.1086/590370
++ Eprint: https://arXiv.org/abs/0804.3536
++ URL: http://cdsads.u-strasbg.fr/abs/2008ApJS..178..179P
--- /dev/null
--- /dev/null
++# watch control file for uscan
++version=3
++https://bitbucket.org/broukema/mpgrafic/downloads?tab=tags .*/v(\d\S+)\.tar\.gz debian uupdate
projects / mpgrafic.git / commitdiff